Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009731

Physical Location & Seq

Genomic Coordinates Reverse (-)

50041724 .. 50056297

Gene Structure 14574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00118550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGCAGCGTAGCGGTCACGGTCACTATGAGGCGTTGCCTTACTGCTGGCGGTTGGTCGTAGACCATAGACTCGTTTGGGTTTTGGTATTTGCTCGACACGAGAGATGGAGCGAAGTAAATAGAGGAAGAAAGGAGAGAAGACGAGGCCATCCCTTCAAAATGTGCATAGCTTTGCTGATTGAAGAAGATGAATGGGAAAATGAGCTCTTCTTTAGCTTCAGAAGGTATTCTAATTGGCGTGTTCGAAGAAGAGACTGTTCACTCCAAAGAAAGAAAATCCCTTCCGAATGCAGCTGCTCGAGAGCTGATGTGTGCCTGGAGTGCTGGCCGCTTATGACAATTGCCATTAAAGTGATTGACACTGCCCTTTCGGATTGCGGCTGGAAACCTGCATCTAAGGATTCTAGGCAACAGCAGCTCTGCAGGTTCGTTTCGTTGTTATGGGCAACGTCAAAGACGGAGACTTTGTTTTCAGCCGGAAACCAACCATTCTCATCAAGGTTTTTCTATCCTCACCATTTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_S

Protein Analysis

175

Amino Acids

20.96

Weight (kDa)

9.3

Isoelectric Point (pI)

66.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009731)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0349621 RchiOBHm_Chr2g0097751 RchiOBHm_Chr2g0174501 RchiOBHm_Chr5g0079771 RchiOBHm_Chr6g0277391
rosa_laevigata	RLG00000028020
rosa_roxburghii	Rroxscaffold_2G00118550
rosa_rugosa	Rorug04G0139100
rosa_samantha	Rh2BG337100 Rh2BG669400 Rh3AG337900 Rh3BG074300 Rh3CG073800 Rh3CG372100 Rh3DG372700 Rh4AG102200 Rh4BG325700 Rh4CG340700 Rh5BG287600 Rh5DG383600 Rh7BG440800 Rh7CG197700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	397, 414
AccI	GTMKAC	1 cut(s)	60
AciI	CCGC	4 cut(s)	12, 49, 329, 378
AcoI	YGGCCR	1 cut(s)	326
AcuI	CTGAAG	1 cut(s)	202
AgsI	TTSAA	2 cut(s)	157, 182
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	6 cut(s)	170, 205, 216, 294, 305, 418
AluI	AGCT	6 cut(s)	170, 205, 216, 294, 305, 418
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	2 cut(s)	246, 455
Ama87I	CYCGRG	1 cut(s)	298
AoxI	GGCC	2 cut(s)	145, 326
ApeKI	GCWGC	4 cut(s)	4, 291, 294, 415
ArsI	GACNNNNNNTTYG	2 cut(s)	448, 480
Asp700I	GAANNNNTTC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	506
AsuII	TTCGAA	1 cut(s)	244
AvaI	CYCGRG	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	207
BauI	CACGAG	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	4 cut(s)	16, 281, 303, 427
BccI	CCATC	2 cut(s)	99, 156
BciT130I	CCWGG	1 cut(s)	317
BcoDI	GTCTC	2 cut(s)	246, 455
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	421
BfuAI	ACCTGC	2 cut(s)	397, 414
BisI	GCNGC	6 cut(s)	5, 292, 295, 329, 379, 416
BlsI	GCNGC	6 cut(s)	6, 293, 296, 330, 380, 417
Bme1390I	CCNGG	1 cut(s)	317
BmeT110I	CYCGRG	1 cut(s)	298
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	1 cut(s)	401
BpiI	GAAGAC	1 cut(s)	145
BpmI	CTGGAG	1 cut(s)	338
Bpu14I	TTCGAA	1 cut(s)	244
BsaXI	ACNNNNNCTCC	2 cut(s)	452, 482
BseBI	CCWGG	1 cut(s)	317
BseGI	GGATG	1 cut(s)	148
BseXI	GCAGC	4 cut(s)	16, 281, 303, 427
BshFI	GGCC	2 cut(s)	147, 328
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	477
BsmAI	GTCTC	2 cut(s)	246, 455
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	2 cut(s)	147, 328
BsoBI	CYCGRG	1 cut(s)	298
Bsp119I	TTCGAA	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	207
BspACI	CCGC	4 cut(s)	12, 49, 329, 378
BspANI	GGCC	2 cut(s)	147, 328
BspMAI	CTGCAG	1 cut(s)	425
BspMI	ACCTGC	2 cut(s)	397, 414
BspQI	GCTCTTC	1 cut(s)	212
BspT104I	TTCGAA	1 cut(s)	244
BssSI	CACGAG	1 cut(s)	98
Bst2BI	CACGAG	1 cut(s)	98
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	20, 257
Bst6I	CTCTTC	2 cut(s)	212, 244
BstBI	TTCGAA	1 cut(s)	244
BstC8I	GCNNGC	2 cut(s)	47, 326
BstDEI	CTNAG	1 cut(s)	396
BstF5I	GGATG	1 cut(s)	148
BstMAI	GTCTC	2 cut(s)	246, 455
BstMWI	GCNNNNNNNGC	2 cut(s)	321, 415
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	421
BstV1I	GCAGC	4 cut(s)	16, 281, 303, 427
BstV2I	GAAGAC	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	147, 328
BtsCI	GGATG	1 cut(s)	148
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	360
BveI	ACCTGC	2 cut(s)	397, 414
Cac8I	GCNNGC	2 cut(s)	47, 326
DdeI	CTNAG	1 cut(s)	396
EaeI	YGGCCR	1 cut(s)	326
Eam1104I	CTCTTC	2 cut(s)	212, 244
EarI	CTCTTC	2 cut(s)	212, 244
Ecl136II	GAGCTC	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	202
Eco88I	CYCGRG	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	207
FaiI	YATR	5 cut(s)	27, 66, 167, 335, 442
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	6 cut(s)	5, 292, 295, 329, 379, 416
FokI	GGATG	1 cut(s)	135
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	6 cut(s)	5, 292, 295, 329, 379, 416
FspBI	CTAG	1 cut(s)	405
GluI	GCNGC	6 cut(s)	5, 292, 295, 329, 379, 416
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	2 cut(s)	147, 328
HapII	CCGG	1 cut(s)	477
HinfI	GANTC	2 cut(s)	69, 401
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	2 cut(s)	61, 260
Hpy188I	TCNGA	3 cut(s)	221, 286, 373
Hpy188III	TCNNGA	1 cut(s)	300
Hpy8I	GTNNAC	2 cut(s)	61, 260
HpyAV	CCTTC	3 cut(s)	163, 216, 291
HpyCH4III	ACNGT	2 cut(s)	20, 257
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	5 cut(s)	4, 165, 291, 392, 423
HpyF10VI	GCNNNNNNNGC	2 cut(s)	321, 415
HpyF3I	CTNAG	1 cut(s)	396
HpySE526I	ACGT	1 cut(s)	449
LguI	GCTCTTC	1 cut(s)	212
LmnI	GCTCC	1 cut(s)	108
LpnPI	CCDG	8 cut(s)	31, 302, 310, 329, 367, 402, 409, 490
Lsp1109I	GCAGC	4 cut(s)	16, 281, 303, 427
LweI	GCATC	1 cut(s)	401
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	1 cut(s)	449
MaeIII	GTNAC	2 cut(s)	14, 20
MboII	GAAGA	7 cut(s)	138, 150, 194, 197, 199, 258, 261
MfeI	CAATTG	1 cut(s)	339
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	2 cut(s)	232, 339
MlyI	GAGTC	1 cut(s)	63
MnlI	CCTC	4 cut(s)	22, 116, 137, 522
MroXI	GAANNNNTTC	1 cut(s)	226
MseI	TTAA	2 cut(s)	348, 526
MslI	CAYNNNNRTG	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	294
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	1 cut(s)	317
MunI	CAATTG	1 cut(s)	339
Mva1269I	GAATGC	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	2 cut(s)	321, 415
NmuCI	GTSAC	2 cut(s)	14, 20
NspV	TTCGAA	1 cut(s)	244
PaeR7I	CTCGAG	1 cut(s)	298
PciSI	GCTCTTC	1 cut(s)	212
PctI	GAATGC	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	401
PkrI	GCNGC	6 cut(s)	6, 293, 296, 330, 380, 417
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
Psp124BI	GAGCTC	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PstI	CTGCAG	1 cut(s)	425
PvuII	CAGCTG	1 cut(s)	294
RseI	CAYNNNNRTG	1 cut(s)	350
SacI	GAGCTC	1 cut(s)	207
SapI	GCTCTTC	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	348, 526
SatI	GCNGC	6 cut(s)	5, 292, 295, 329, 379, 416
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	207
SfaNI	GCATC	1 cut(s)	401
SfcI	CTRYAG	1 cut(s)	421
Sfr274I	CTCGAG	1 cut(s)	298
SfuI	TTCGAA	1 cut(s)	244
SlaI	CTCGAG	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
Sse9I	AATT	2 cut(s)	232, 339
SsiI	CCGC	4 cut(s)	12, 49, 329, 378
SspMI	CTAG	1 cut(s)	405
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	20, 257
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	3 cut(s)	94, 244, 299
TasI	AATT	2 cut(s)	232, 339
TauI	GCSGC	2 cut(s)	331, 381
TfiI	GAWTC	1 cut(s)	401
Tru1I	TTAA	2 cut(s)	348, 526
Tru9I	TTAA	2 cut(s)	348, 526
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	2 cut(s)	14, 20
TseI	GCWGC	4 cut(s)	4, 291, 294, 415
Tsp45I	GTSAC	2 cut(s)	14, 20
TspDTI	ATGAA	1 cut(s)	204
TspGWI	ACGGA	1 cut(s)	473
TspRI	CASTG	1 cut(s)	367
XhoI	CTCGAG	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	226
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.