Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009731

Physical Location & Seq

Genomic Coordinates Reverse (-)

17774442 .. 17776672

Gene Structure 2231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028020

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCTTTTCCTCCGCCTATGTGGCTATGTTGCTCTCAGCATAGAGTTAACTTTTATAAAACTATCTCTCAAGATTTGGAGTTGGAATCACTTTTTCCAGGCATGTCTCCATGATCTGGAGTTGGAAAATGGTATTGCTGTTCTGAATAAAGAAAACTATCTCACAAGATTTGGAGTTGGAATCACTTTTTCCAGGCATGTCTCCATGATCTGGAGTTGGAGAATGGTTCTGCCATTGGTATTGGATTTGGAACTTTGGGATCGAACCTGCTTTAGCTACACTTACATAGGATCTACAAAGGTCACACATTGCAGCTTCAAGCATTCTTCAAATCTTGCATACTCCATGGCTGGATGGACAAAATTTCCACTCTTATACTCTACAAAGCATGAAGCGGACAACCTTTCAGATCAGTACACGAATGAGCTTCATGGTTGTTGTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

17.24

Weight (kDa)

7.03

Isoelectric Point (pI)

20.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009731)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0349621 RchiOBHm_Chr2g0097751 RchiOBHm_Chr2g0174501 RchiOBHm_Chr5g0079771 RchiOBHm_Chr6g0277391
rosa_laevigata	RLG00000028020
rosa_roxburghii	Rroxscaffold_2G00118550
rosa_rugosa	Rorug04G0139100
rosa_samantha	Rh2BG337100 Rh2BG669400 Rh3AG337900 Rh3BG074300 Rh3CG073800 Rh3CG372100 Rh3DG372700 Rh4AG102200 Rh4BG325700 Rh4CG340700 Rh5BG287600 Rh5DG383600 Rh7BG440800 Rh7CG197700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	56
Acc36I	ACCTGC	1 cut(s)	275
AccB7I	CCANNNNNTGG	2 cut(s)	115, 210
AciI	CCGC	2 cut(s)	13, 395
AclWI	GGATC	2 cut(s)	267, 298
AcsI	RAATTY	1 cut(s)	362
AfaI	GTAC	2 cut(s)	416, 442
AfiI	CCNNNNNNNGG	2 cut(s)	115, 210
AgsI	TTSAA	2 cut(s)	319, 330
AjnI	CCWGG	2 cut(s)	96, 191
AluBI	AGCT	3 cut(s)	276, 315, 427
AluI	AGCT	3 cut(s)	276, 315, 427
Alw26I	GTCTC	2 cut(s)	110, 205
AlwI	GGATC	2 cut(s)	267, 298
ApeKI	GCWGC	1 cut(s)	312
ApoI	RAATTY	1 cut(s)	362
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	1 cut(s)	348
BciT130I	CCWGG	2 cut(s)	98, 193
BcoDI	GTCTC	2 cut(s)	110, 205
BfuAI	ACCTGC	1 cut(s)	275
BglI	GCCNNNNNGGC	1 cut(s)	21
BisI	GCNGC	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	314
Bme1390I	CCNGG	2 cut(s)	98, 193
BmrFI	CCNGG	2 cut(s)	98, 193
BpmI	CTGGAG	2 cut(s)	137, 232
BpuEI	CTTGAG	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 210
Bse3DI	GCAATG	1 cut(s)	307
BseBI	CCWGG	2 cut(s)	98, 193
BseDI	CCNNGG	1 cut(s)	345
BseGI	GGATG	1 cut(s)	359
BseLI	CCNNNNNNNGG	2 cut(s)	115, 210
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	324
BslI	CCNNNNNNNGG	2 cut(s)	115, 210
BsmAI	GTCTC	2 cut(s)	110, 205
BsmI	GAATGC	1 cut(s)	322
Bsp1407I	TGTACA	1 cut(s)	440
Bsp143I	GATC	5 cut(s)	112, 207, 259, 290, 409
Bsp19I	CCATGG	1 cut(s)	345
BspACI	CCGC	2 cut(s)	13, 395
BspCNI	CTCAG	1 cut(s)	48
BspMI	ACCTGC	1 cut(s)	275
BspPI	GGATC	2 cut(s)	267, 298
BsrDI	GCAATG	1 cut(s)	307
BsrGI	TGTACA	1 cut(s)	440
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	5 cut(s)	112, 207, 259, 290, 409
BssT1I	CCWWGG	1 cut(s)	345
Bst2UI	CCWGG	2 cut(s)	98, 193
BstAUI	TGTACA	1 cut(s)	440
BstDEI	CTNAG	1 cut(s)	35
BstDSI	CCRYGG	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	359
BstKTI	GATC	5 cut(s)	115, 210, 262, 293, 412
BstMAI	GTCTC	2 cut(s)	110, 205
BstMBI	GATC	5 cut(s)	112, 207, 259, 290, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	21
BstNI	CCWGG	2 cut(s)	98, 193
BstNSI	RCATGY	2 cut(s)	105, 200
BstSCI	CCNGG	2 cut(s)	96, 191
BstV1I	GCAGC	1 cut(s)	324
BstX2I	RGATCY	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	290
BtgI	CCRYGG	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	359
BveI	ACCTGC	1 cut(s)	275
Csp6I	GTAC	2 cut(s)	415, 441
CviAII	CATG	7 cut(s)	102, 110, 197, 205, 346, 389, 431
CviJI	RGCY	5 cut(s)	24, 276, 315, 350, 427
CviKI_1	RGCY	5 cut(s)	24, 276, 315, 350, 427
CviQI	GTAC	2 cut(s)	415, 441
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	5 cut(s)	114, 209, 261, 292, 411
DpnII	GATC	5 cut(s)	112, 207, 259, 290, 409
Eco130I	CCWWGG	1 cut(s)	345
EcoRII	CCWGG	2 cut(s)	96, 191
EcoT14I	CCWWGG	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	7 cut(s)	105, 113, 200, 208, 349, 392, 434
FatI	CATG	7 cut(s)	101, 109, 196, 204, 345, 388, 430
Fnu4HI	GCNGC	1 cut(s)	313
FokI	GGATG	1 cut(s)	366
Fsp4HI	GCNGC	1 cut(s)	313
GluI	GCNGC	1 cut(s)	313
GsuI	CTGGAG	2 cut(s)	137, 232
Hin1II	CATG	7 cut(s)	105, 113, 200, 208, 349, 392, 434
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HinfI	GANTC	2 cut(s)	85, 180
HpaI	GTTAAC	1 cut(s)	48
Hpy166II	GTNNAC	2 cut(s)	48, 417
Hpy188I	TCNGA	2 cut(s)	144, 409
Hpy188III	TCNNGA	3 cut(s)	70, 116, 211
Hpy8I	GTNNAC	2 cut(s)	48, 417
HpyCH4V	TGCA	2 cut(s)	312, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	21
HpyF3I	CTNAG	1 cut(s)	35
Hsp92II	CATG	7 cut(s)	105, 113, 200, 208, 349, 392, 434
KspAI	GTTAAC	1 cut(s)	48
Kzo9I	GATC	5 cut(s)	112, 207, 259, 290, 409
LpnPI	CCDG	8 cut(s)	83, 101, 110, 178, 196, 205, 280, 336
Lsp1109I	GCAGC	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	5 cut(s)	114, 209, 261, 292, 411
MboI	GATC	5 cut(s)	112, 207, 259, 290, 409
MboII	GAAGA	1 cut(s)	318
MflI	RGATCY	1 cut(s)	290
MluCI	AATT	1 cut(s)	362
MmeI	TCCRAC	4 cut(s)	62, 102, 157, 197
MnlI	CCTC	1 cut(s)	20
MseI	TTAA	1 cut(s)	47
MspR9I	CCNGG	2 cut(s)	98, 193
Mva1269I	GAATGC	1 cut(s)	322
MvaI	CCWGG	2 cut(s)	98, 193
MwoI	GCNNNNNNNGC	1 cut(s)	21
NcoI	CCATGG	1 cut(s)	345
NdeII	GATC	5 cut(s)	112, 207, 259, 290, 409
NlaIII	CATG	7 cut(s)	105, 113, 200, 208, 349, 392, 434
NmuCI	GTSAC	1 cut(s)	301
NspI	RCATGY	2 cut(s)	105, 200
PctI	GAATGC	1 cut(s)	322
PfeI	GAWTC	2 cut(s)	85, 180
PflMI	CCANNNNNTGG	2 cut(s)	115, 210
PkrI	GCNGC	1 cut(s)	314
PsiI	TTATAA	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	96, 191
PspGI	CCWGG	2 cut(s)	96, 191
PsuI	RGATCY	1 cut(s)	290
RsaI	GTAC	2 cut(s)	416, 442
RsaNI	GTAC	2 cut(s)	415, 441
SaqAI	TTAA	1 cut(s)	47
SatI	GCNGC	1 cut(s)	313
Sau3AI	GATC	5 cut(s)	112, 207, 259, 290, 409
ScrFI	CCNGG	2 cut(s)	98, 193
SetI	ASST	6 cut(s)	269, 278, 303, 317, 405, 429
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	1 cut(s)	362
SsiI	CCGC	2 cut(s)	13, 395
StyD4I	CCNGG	2 cut(s)	96, 191
StyI	CCWWGG	1 cut(s)	345
TaqI	TCGA	1 cut(s)	262
TasI	AATT	1 cut(s)	362
TatI	WGTACW	2 cut(s)	414, 440
TfiI	GAWTC	2 cut(s)	85, 180
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	1 cut(s)	312
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	2 cut(s)	405, 419
Van91I	CCANNNNNTGG	2 cut(s)	115, 210
XapI	RAATTY	1 cut(s)	362
XceI	RCATGY	2 cut(s)	105, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.