RchiOBHm_Chr3g0476931

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0012688
Physical Location & Seq
Reverse (-)
22864485 .. 22865348
864 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44230

Sequence Viewer

Length: 864 bp
ATGGGATATCGGAGGTTTTGGGTCGGATCCGAATCTGCTTCTTGGAATTTTAGACGTGACCTTTTGGAATGCTGTGGCAGGGGCTCGAGATGGGAAGGTTTTCGACCCAGATCGGAGTGCAGGTTGGAACGACCGCGGGTGTCGGACTTGTTTTCTGGTTTCTGGTTTCCAAATCGGACCAGGGGGAGTTCGCGACCAGAGATTTCATGCCAGAGTCCGACGGCGGTGCAGCAGTCCATGGTTGGTGGCGCTTGGAGTCGTGTGGTTGACACCGAGACGAGAGATTTCCGGCGTTGCAGATCTGGAAGGATTGCCGGATGTCGGGCTGAAGCCAGCTTGGGTGCCCAGATCAGATCCTTGGGTGCCCAGATCAAATTATGTTGGGCCTTGGCCTTTGTCAAGTTTGACCTGTCAGACTTGATCTTGGATTCAGGCCGGATTTGGGTCCGCATTTGGGACCCAAGTGGTAATCGAATCTGGATCTTGGATCCGAGACAGCTGCTCATTTTGATATGGTATTTGTTCTGGTTCTTGGGAGTTCGATTGCTAATTTACGAGTTTCTGACACCCTCGGTTACTTTCGAACTCTCGGTGAGCGAATCACCTCTCCCAGGTGTTCATATCACCGGTTACGGCTACGGTTACCGTTACTATTACATTTACACTGCTCTCGTGACATATGCAGTGCAGCGATGTCGTTCGGCATCAAGTCACATGGTTACCTTTCATTCTAGATGCGTCTGTGCATCTTGTTATCTTTTATTATTTTTCTACATTATAGGTGCGTCTGTGCATCTTGTTAAGTTTTTTATTCTTTCTTTCGATGTTTTTGCATCGCTCTATGTACTTCTCAGTTTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

33.17

Weight (kDa)

9.46

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 111
AccB1I GGYRCC 2 cut(s) 341, 362
AccII CGCG 2 cut(s) 136, 193
AciI CCGC 4 cut(s) 134, 136, 224, 448
AclWI GGATC 6 cut(s) 21, 34, 348, 482, 488, 495
AcsI RAATTY 1 cut(s) 46
AcuI CTGAAG 1 cut(s) 348
AfaI GTAC 1 cut(s) 846
AfiI CCNNNNNNNGG 4 cut(s) 321, 442, 454, 611
AgeI ACCGGT 1 cut(s) 626
AjiI CACGTC 1 cut(s) 56
AjnI CCWGG 2 cut(s) 179, 610
AluBI AGCT 2 cut(s) 336, 499
AluI AGCT 2 cut(s) 336, 499
Alw26I GTCTC 2 cut(s) 269, 487
AlwI GGATC 6 cut(s) 21, 34, 348, 482, 488, 495
Ama87I CYCGRG 1 cut(s) 85
AoxI GGCC 3 cut(s) 384, 390, 433
ApeKI GCWGC 3 cut(s) 229, 499, 688
ApoI RAATTY 1 cut(s) 46
AsiGI ACCGGT 1 cut(s) 626
Asp700I GAANNNNTTC 1 cut(s) 99
AspLEI GCGC 1 cut(s) 251
AspS9I GGNCC 4 cut(s) 177, 384, 445, 457
AsuHPI GGTGA 3 cut(s) 594, 604, 616
AsuII TTCGAA 1 cut(s) 582
AvaI CYCGRG 1 cut(s) 85
AvaII GGWCC 3 cut(s) 177, 445, 457
BaeGI GKGCMC 2 cut(s) 346, 367
BamHI GGATCC 2 cut(s) 26, 487
BanI GGYRCC 2 cut(s) 341, 362
BanII GRGCYC 1 cut(s) 86
BauI CACGAG 1 cut(s) 671
BbvI GCAGC 3 cut(s) 241, 486, 700
BccI CCATC 1 cut(s) 84
BceAI ACGGC 2 cut(s) 237, 649
BcgI CGANNNNNNTGC 8 cut(s) 208, 242, 481, 515, 677, 711, 812, 846
BciT130I CCWGG 2 cut(s) 181, 612
BcoDI GTCTC 2 cut(s) 269, 487
BfaI CTAG 1 cut(s) 732
BfoI RGCGCY 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 111
BglII AGATCT 1 cut(s) 299
BisI GCNGC 3 cut(s) 230, 500, 689
BlsI GCNGC 3 cut(s) 231, 501, 690
Bme1390I CCNGG 2 cut(s) 181, 612
Bme18I GGWCC 3 cut(s) 177, 445, 457
BmeT110I CYCGRG 1 cut(s) 85
BmgBI CACGTC 1 cut(s) 56
BmgT120I GGNCC 4 cut(s) 177, 384, 445, 457
BmiI GGNNCC 7 cut(s) 28, 343, 364, 446, 458, 459, 489
BmrFI CCNGG 2 cut(s) 181, 612
BmsI GCATC 5 cut(s) 713, 725, 755, 802, 842
Bpu14I TTCGAA 1 cut(s) 582
BsaBI GATNNNNATC 1 cut(s) 31
BsaJI CCNNGG 7 cut(s) 134, 180, 237, 357, 387, 570, 610
BsaWI WCCGGW 1 cut(s) 626
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 4 cut(s) 321, 442, 454, 611
Bse118I RCCGGY 1 cut(s) 626
Bse8I GATNNNNATC 1 cut(s) 31
BseBI CCWGG 2 cut(s) 181, 612
BseDI CCNNGG 7 cut(s) 134, 180, 237, 357, 387, 570, 610
BseGI GGATG 1 cut(s) 323
BseJI GATNNNNATC 1 cut(s) 31
BseLI CCNNNNNNNGG 4 cut(s) 321, 442, 454, 611
BseSI GKGCMC 2 cut(s) 346, 367
BseXI GCAGC 3 cut(s) 241, 486, 700
BsgI GTGCAG 3 cut(s) 139, 248, 707
Bsh1236I CGCG 2 cut(s) 136, 193
Bsh1285I CGRYCG 1 cut(s) 134
BshFI GGCC 3 cut(s) 386, 392, 435
BshNI GGYRCC 2 cut(s) 341, 362
BshTI ACCGGT 1 cut(s) 626
BsiEI CGRYCG 1 cut(s) 134
BsiHKCI CYCGRG 1 cut(s) 85
BsiSI CCGG 4 cut(s) 289, 315, 436, 627
BslFI GGGAC 1 cut(s) 470
BslI CCNNNNNNNGG 4 cut(s) 321, 442, 454, 611
BsmAI GTCTC 2 cut(s) 269, 487
BsmBI CGTCTC 1 cut(s) 269
BsmFI GGGAC 1 cut(s) 470
BsmI GAATGC 1 cut(s) 74
BsnI GGCC 3 cut(s) 386, 392, 435
BsoBI CYCGRG 1 cut(s) 85
Bsp119I TTCGAA 1 cut(s) 582
Bsp1286I GDGCHC 3 cut(s) 86, 346, 367
Bsp143I GATC 9 cut(s) 26, 110, 299, 348, 353, 369, 420, 480, 487
Bsp19I CCATGG 1 cut(s) 237
Bsp68I TCGCGA 1 cut(s) 193
BspACI CCGC 4 cut(s) 134, 136, 224, 448
BspANI GGCC 3 cut(s) 386, 392, 435
BspCNI CTCAG 1 cut(s) 864
BspFNI CGCG 2 cut(s) 136, 193
BspLI GGNNCC 7 cut(s) 28, 343, 364, 446, 458, 459, 489
BspMI ACCTGC 1 cut(s) 111
BspPI GGATC 6 cut(s) 21, 34, 348, 482, 488, 495
BspT104I TTCGAA 1 cut(s) 582
BspT107I GGYRCC 2 cut(s) 341, 362
BsrFI RCCGGY 1 cut(s) 626
BssAI RCCGGY 1 cut(s) 626
BssECI CCNNGG 7 cut(s) 134, 180, 237, 357, 387, 570, 610
BssMI GATC 9 cut(s) 26, 110, 299, 348, 353, 369, 420, 480, 487
BssSI CACGAG 1 cut(s) 671
BssT1I CCWWGG 3 cut(s) 237, 357, 387
Bst2BI CACGAG 1 cut(s) 671
Bst2UI CCWGG 2 cut(s) 181, 612
Bst4CI ACNGT 2 cut(s) 641, 647
BstBI TTCGAA 1 cut(s) 582
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 1 cut(s) 851
BstDSI CCRYGG 2 cut(s) 134, 237
BstEII GGTNACC 2 cut(s) 641, 718
BstENI CCTNNNNNAGG 1 cut(s) 609
BstF5I GGATG 1 cut(s) 323
BstFNI CGCG 2 cut(s) 136, 193
BstH2I RGCGCY 1 cut(s) 252
BstHHI GCGC 1 cut(s) 251
BstKTI GATC 9 cut(s) 29, 113, 302, 351, 356, 372, 423, 483, 490
BstMAI GTCTC 2 cut(s) 269, 487
BstMBI GATC 9 cut(s) 26, 110, 299, 348, 353, 369, 420, 480, 487
BstMCI CGRYCG 1 cut(s) 134
BstNI CCWGG 2 cut(s) 181, 612
BstPI GGTNACC 2 cut(s) 641, 718
BstSCI CCNGG 2 cut(s) 179, 610
BstSLI GKGCMC 2 cut(s) 346, 367
BstUI CGCG 2 cut(s) 136, 193
BstV1I GCAGC 3 cut(s) 241, 486, 700
BstX2I RGATCY 5 cut(s) 26, 299, 353, 480, 487
BstYI RGATCY 5 cut(s) 26, 299, 353, 480, 487
BsuRI GGCC 3 cut(s) 386, 392, 435
BtgI CCRYGG 2 cut(s) 134, 237
BtgZI GCGATG 2 cut(s) 706, 819
BtrI CACGTC 1 cut(s) 56
BtsCI GGATG 1 cut(s) 323
BtsI GCAGTG 2 cut(s) 663, 690
BtsIMutI CAGTG 2 cut(s) 663, 690
BtuMI TCGCGA 1 cut(s) 193
BveI ACCTGC 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 334
CfoI GCGC 1 cut(s) 251
Cfr10I RCCGGY 1 cut(s) 626
Cfr13I GGNCC 4 cut(s) 177, 384, 445, 457
Cfr42I CCGCGG 1 cut(s) 137
CseI GACGC 2 cut(s) 727, 774
Csp6I GTAC 1 cut(s) 845
CspAI ACCGGT 1 cut(s) 626
CviAII CATG 3 cut(s) 207, 238, 715
CviJI RGCY 9 cut(s) 84, 326, 332, 336, 386, 392, 435, 499, 636
CviKI_1 RGCY 9 cut(s) 84, 326, 332, 336, 386, 392, 435, 499, 636
CviQI GTAC 1 cut(s) 845
DdeI CTNAG 1 cut(s) 851
DpnI GATC 9 cut(s) 28, 112, 301, 350, 355, 371, 422, 482, 489
DpnII GATC 9 cut(s) 26, 110, 299, 348, 353, 369, 420, 480, 487
Eco130I CCWWGG 3 cut(s) 237, 357, 387
Eco24I GRGCYC 1 cut(s) 86
Eco32I GATATC 1 cut(s) 8
Eco47I GGWCC 3 cut(s) 177, 445, 457
Eco57I CTGAAG 1 cut(s) 348
Eco88I CYCGRG 1 cut(s) 85
Eco91I GGTNACC 2 cut(s) 641, 718
EcoNI CCTNNNNNAGG 1 cut(s) 609
EcoO109I RGGNCCY 1 cut(s) 457
EcoO65I GGTNACC 2 cut(s) 641, 718
EcoRII CCWGG 2 cut(s) 179, 610
EcoRV GATATC 1 cut(s) 8
EcoT14I CCWWGG 3 cut(s) 237, 357, 387
EcoT38I GRGCYC 1 cut(s) 86
ErhI CCWWGG 3 cut(s) 237, 357, 387
Esp3I CGTCTC 1 cut(s) 269
FaeI CATG 3 cut(s) 210, 241, 718
FaqI GGGAC 1 cut(s) 470
FatI CATG 3 cut(s) 206, 237, 714
FauI CCCGC 1 cut(s) 129
FauNDI CATATG 1 cut(s) 679
Fnu4HI GCNGC 3 cut(s) 230, 500, 689
FokI GGATG 1 cut(s) 330
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 3 cut(s) 230, 500, 689
FspBI CTAG 1 cut(s) 732
GlaI GCGC 1 cut(s) 250
GluI GCNGC 3 cut(s) 230, 500, 689
HaeII RGCGCY 1 cut(s) 252
HaeIII GGCC 3 cut(s) 386, 392, 435
HapII CCGG 4 cut(s) 289, 315, 436, 627
HgaI GACGC 2 cut(s) 727, 774
HhaI GCGC 1 cut(s) 251
Hin1II CATG 3 cut(s) 210, 241, 718
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 6 cut(s) 32, 214, 256, 428, 474, 599
HpaII CCGG 4 cut(s) 289, 315, 436, 627
HphI GGTGA 3 cut(s) 594, 604, 616
Hpy166II GTNNAC 1 cut(s) 268
Hpy188III TCNNGA 6 cut(s) 87, 192, 303, 478, 673, 732
Hpy8I GTNNAC 1 cut(s) 268
Hpy99I CGWCG 1 cut(s) 223
HpyAV CCTTC 2 cut(s) 89, 300
HpyCH4III ACNGT 2 cut(s) 641, 647
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 8 cut(s) 120, 229, 297, 683, 688, 746, 793, 833
HpyF3I CTNAG 1 cut(s) 851
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 3 cut(s) 210, 241, 718
HspAI GCGC 1 cut(s) 249
KflI GGGWCCC 1 cut(s) 457
KspI CCGCGG 1 cut(s) 137
Kzo9I GATC 9 cut(s) 26, 110, 299, 348, 353, 369, 420, 480, 487
Lsp1109I GCAGC 3 cut(s) 241, 486, 700
LweI GCATC 5 cut(s) 713, 725, 755, 802, 842
MaeI CTAG 1 cut(s) 732
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 8 cut(s) 56, 574, 629, 641, 647, 673, 710, 718
MalI GATC 9 cut(s) 28, 112, 301, 350, 355, 371, 422, 482, 489
MboI GATC 9 cut(s) 26, 110, 299, 348, 353, 369, 420, 480, 487
MflI RGATCY 5 cut(s) 26, 299, 353, 480, 487
MhlI GDGCHC 3 cut(s) 86, 346, 367
MluCI AATT 3 cut(s) 46, 374, 549
MlyI GAGTC 2 cut(s) 223, 265
MmeI TCCRAC 4 cut(s) 4, 105, 123, 242
MnlI CCTC 3 cut(s) 6, 580, 615
MroXI GAANNNNTTC 1 cut(s) 99
MseI TTAA 2 cut(s) 801, 862
MspA1I CMGCKG 2 cut(s) 136, 499
MspI CCGG 4 cut(s) 289, 315, 436, 627
MspR9I CCNGG 2 cut(s) 181, 612
Mva1269I GAATGC 1 cut(s) 74
MvaI CCWGG 2 cut(s) 181, 612
MvnI CGCG 2 cut(s) 136, 193
NcoI CCATGG 1 cut(s) 237
NdeI CATATG 1 cut(s) 679
NdeII GATC 9 cut(s) 26, 110, 299, 348, 353, 369, 420, 480, 487
NlaIII CATG 3 cut(s) 210, 241, 718
NlaIV GGNNCC 7 cut(s) 28, 343, 364, 446, 458, 459, 489
NmuCI GTSAC 3 cut(s) 56, 673, 710
NruI TCGCGA 1 cut(s) 193
NspV TTCGAA 1 cut(s) 582
PaeR7I CTCGAG 1 cut(s) 85
PctI GAATGC 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 4 cut(s) 32, 428, 474, 599
PinAI ACCGGT 1 cut(s) 626
PkrI GCNGC 3 cut(s) 231, 501, 690
PleI GAGTC 2 cut(s) 222, 264
PpsI GAGTC 2 cut(s) 222, 264
PpuMI RGGWCCY 1 cut(s) 457
Psp5II RGGWCCY 1 cut(s) 457
Psp6I CCWGG 2 cut(s) 179, 610
PspEI GGTNACC 2 cut(s) 641, 718
PspGI CCWGG 2 cut(s) 179, 610
PspN4I GGNNCC 7 cut(s) 28, 343, 364, 446, 458, 459, 489
PspPI GGNCC 4 cut(s) 177, 384, 445, 457
PspPPI RGGWCCY 1 cut(s) 457
PsuI RGATCY 5 cut(s) 26, 299, 353, 480, 487
PvuII CAGCTG 1 cut(s) 499
RruI TCGCGA 1 cut(s) 193
RsaI GTAC 1 cut(s) 846
RsaNI GTAC 1 cut(s) 845
SacII CCGCGG 1 cut(s) 137
SaqAI TTAA 2 cut(s) 801, 862
SatI GCNGC 3 cut(s) 230, 500, 689
Sau3AI GATC 9 cut(s) 26, 110, 299, 348, 353, 369, 420, 480, 487
Sau96I GGNCC 4 cut(s) 177, 384, 445, 457
SchI GAGTC 2 cut(s) 223, 265
ScrFI CCNGG 2 cut(s) 181, 612
SduI GDGCHC 3 cut(s) 86, 346, 367
SfaNI GCATC 5 cut(s) 713, 725, 755, 802, 842
Sfr274I CTCGAG 1 cut(s) 85
Sfr303I CCGCGG 1 cut(s) 137
SfuI TTCGAA 1 cut(s) 582
SgrBI CCGCGG 1 cut(s) 137
SinI GGWCC 3 cut(s) 177, 445, 457
SlaI CTCGAG 1 cut(s) 85
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
Sse9I AATT 3 cut(s) 46, 374, 549
SsiI CCGC 4 cut(s) 134, 136, 224, 448
SspMI CTAG 1 cut(s) 732
StyD4I CCNGG 2 cut(s) 179, 610
StyI CCWWGG 3 cut(s) 237, 357, 387
TaaI ACNGT 2 cut(s) 641, 647
TaiI ACGT 1 cut(s) 58
TaqI TCGA 6 cut(s) 86, 103, 472, 541, 582, 822
TasI AATT 3 cut(s) 46, 374, 549
TatI WGTACW 1 cut(s) 844
TfiI GAWTC 4 cut(s) 32, 428, 474, 599
Tru1I TTAA 2 cut(s) 801, 862
Tru9I TTAA 2 cut(s) 801, 862
TscAI CASTG 2 cut(s) 670, 690
TseFI GTSAC 3 cut(s) 56, 673, 710
TseI GCWGC 3 cut(s) 229, 499, 688
Tsp45I GTSAC 3 cut(s) 56, 673, 710
TspDTI ATGAA 3 cut(s) 195, 608, 716
TspRI CASTG 2 cut(s) 670, 690
VpaK11BI GGWCC 3 cut(s) 177, 445, 457
XagI CCTNNNNNAGG 1 cut(s) 609
XapI RAATTY 1 cut(s) 46
XbaI TCTAGA 1 cut(s) 731
XhoI CTCGAG 1 cut(s) 85
XmnI GAANNNNTTC 1 cut(s) 99
XspI CTAG 1 cut(s) 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.