Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012688

Physical Location & Seq

Genomic Coordinates Reverse (-)

22674677 .. 22676039

Gene Structure 1363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017893

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGGTGGACGTTTCTGCAACTTTCTCCATCTCCAATGGAGATCAATATCGGCACATCCTTTGCTGTCGTATTCCTCGAGTGCGGTGCATACCGTCTCTTCCTTTCTTCAGGTTTGCTTTTCAAAGGAGTGGTCTACAACTTCTCTTGCGGCGGCAGATCGTGATATGATCCCTTTCTCTTGGGTCTTTACAACTTGGGATTCAAGGCTGTGTTCGATTTTGGCAAGTGGTCGGCGACCTTTTGCTGGGAAATCGAAGTTGTTGGGTCGGATCCGGATCTGGGATCCAGGGACTATGAAGACTTCTTGGAATATTGGCCGTGAGGTTGGGTGGCGAAGGCACCTAGCTGCACGCCTCATTTATGAGAATTCCCGTCCGACTTTGCATCAGCCTTTCCAGGGACGGTCCTGGTTGCAATGGATACTGTTGTCGGGATCTTTAGAGCCAGAAGGTTGGAGTGCTTGGTTCAACAGATTGCTATGGGTTTCTCCTTCCAGGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

19.26

Weight (kDa)

11.03

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012688)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476931 RchiOBHm_Chr4g0392271 RchiOBHm_Chr7g0187431
rosa_laevigata	RLG00000003932 RLG00000007563 RLG00000008341 RLG00000017893 RLG00000020729 RLG00000021147 RLG00000025201
rosa_multiflora	Rmu_co8156428.1_g000001 Rmu_sc0010379.1_g000011 Rmu_ssc0000312.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408140 Rroxscaffold_6G00420820
rosa_samantha	Rh1CG258700 Rh2BG566100 Rh6CG176000 Rh7BG010400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	339
AccI	GTMKAC	1 cut(s)	134
AccIII	TCCGGA	1 cut(s)	273
AciI	CCGC	3 cut(s)	83, 149, 152
AclWI	GGATC	7 cut(s)	163, 265, 278, 278, 284, 291, 442
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	1 cut(s)	92
AfiI	CCNNNNNNNGG	3 cut(s)	245, 280, 398
AgsI	TTSAA	3 cut(s)	123, 204, 469
AjnI	CCWGG	4 cut(s)	286, 396, 407, 494
AluBI	AGCT	1 cut(s)	347
AluI	AGCT	1 cut(s)	347
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	7 cut(s)	163, 265, 278, 278, 284, 291, 442
Ama87I	CYCGRG	1 cut(s)	76
Aor13HI	TCCGGA	1 cut(s)	273
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	1 cut(s)	367
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AspS9I	GGNCC	1 cut(s)	405
AvaI	CYCGRG	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	405
BaeI	ACNNNNGTAYC	2 cut(s)	413, 446
BamHI	GGATCC	2 cut(s)	270, 283
BanI	GGYRCC	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	1 cut(s)	36
BceAI	ACGGC	1 cut(s)	303
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BciT130I	CCWGG	4 cut(s)	288, 398, 409, 496
BciVI	GTATCC	1 cut(s)	414
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	1 cut(s)	344
BfuI	GTATCC	1 cut(s)	414
BisI	GCNGC	3 cut(s)	150, 153, 348
BlsI	GCNGC	3 cut(s)	151, 154, 349
Bme1390I	CCNGG	4 cut(s)	288, 398, 409, 496
Bme18I	GGWCC	1 cut(s)	405
BmeT110I	CYCGRG	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	405
BmiI	GGNNCC	3 cut(s)	272, 285, 341
BmrFI	CCNGG	4 cut(s)	288, 398, 409, 496
BmsI	GCATC	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	305
BsaBI	GATNNNNATC	2 cut(s)	46, 275
BsaJI	CCNNGG	2 cut(s)	287, 397
BsaWI	WCCGGW	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 280, 398
Bse3DI	GCAATG	1 cut(s)	422
Bse8I	GATNNNNATC	2 cut(s)	46, 275
BseAI	TCCGGA	1 cut(s)	273
BseBI	CCWGG	4 cut(s)	288, 398, 409, 496
BseDI	CCNNGG	2 cut(s)	287, 397
BseGI	GGATG	1 cut(s)	55
BseJI	GATNNNNATC	2 cut(s)	46, 275
BseLI	CCNNNNNNNGG	3 cut(s)	245, 280, 398
BseMI	GCAATG	1 cut(s)	422
BseXI	GCAGC	1 cut(s)	334
BseYI	CCCAGC	1 cut(s)	245
BsgI	GTGCAG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	318
BshNI	GGYRCC	1 cut(s)	339
BsiHKCI	CYCGRG	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	274
BslFI	GGGAC	2 cut(s)	304, 414
BslI	CCNNNNNNNGG	3 cut(s)	245, 280, 398
BsmAI	GTCTC	1 cut(s)	100
BsmBI	CGTCTC	1 cut(s)	100
BsmFI	GGGAC	2 cut(s)	304, 414
BsnI	GGCC	1 cut(s)	318
BsoBI	CYCGRG	1 cut(s)	76
Bsp13I	TCCGGA	1 cut(s)	273
Bsp143I	GATC	7 cut(s)	41, 157, 168, 270, 276, 283, 434
BspACI	CCGC	3 cut(s)	83, 149, 152
BspANI	GGCC	1 cut(s)	318
BspEI	TCCGGA	1 cut(s)	273
BspLI	GGNNCC	3 cut(s)	272, 285, 341
BspPI	GGATC	7 cut(s)	163, 265, 278, 278, 284, 291, 442
BspT107I	GGYRCC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	422
BssECI	CCNNGG	2 cut(s)	287, 397
BssMI	GATC	7 cut(s)	41, 157, 168, 270, 276, 283, 434
Bst2UI	CCWGG	4 cut(s)	288, 398, 409, 496
Bst4CI	ACNGT	3 cut(s)	94, 405, 426
Bst6I	CTCTTC	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	352
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	7 cut(s)	44, 160, 171, 273, 279, 286, 437
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	7 cut(s)	41, 157, 168, 270, 276, 283, 434
BstNI	CCWGG	4 cut(s)	288, 398, 409, 496
BstSCI	CCNGG	4 cut(s)	286, 396, 407, 494
BstV1I	GCAGC	1 cut(s)	334
BstV2I	GAAGAC	1 cut(s)	305
BstX2I	RGATCY	4 cut(s)	270, 276, 283, 434
BstXI	CCANNNNNNTGG	1 cut(s)	453
BstYI	RGATCY	4 cut(s)	270, 276, 283, 434
BsuI	GTATCC	1 cut(s)	414
BsuRI	GGCC	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	405
CviJI	RGCY	5 cut(s)	208, 318, 347, 391, 445
CviKI_1	RGCY	5 cut(s)	208, 318, 347, 391, 445
DpnI	GATC	7 cut(s)	43, 159, 170, 272, 278, 285, 436
DpnII	GATC	7 cut(s)	41, 157, 168, 270, 276, 283, 434
EaeI	YGGCCR	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	405
Eco57I	CTGAAG	1 cut(s)	92
Eco88I	CYCGRG	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	367
EcoRII	CCWGG	4 cut(s)	286, 396, 407, 494
Esp3I	CGTCTC	1 cut(s)	100
FaiI	YATR	5 cut(s)	90, 167, 296, 363, 481
FaqI	GGGAC	2 cut(s)	304, 414
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	3 cut(s)	150, 153, 348
FokI	GGATG	1 cut(s)	42
Fsp4HI	GCNGC	3 cut(s)	150, 153, 348
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	3 cut(s)	150, 153, 348
GsaI	CCCAGC	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	1 cut(s)	274
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	1 cut(s)	274
Hpy166II	GTNNAC	2 cut(s)	8, 135
Hpy188I	TCNGA	2 cut(s)	270, 378
Hpy188III	TCNNGA	3 cut(s)	161, 274, 432
Hpy8I	GTNNAC	2 cut(s)	8, 135
HpyAV	CCTTC	3 cut(s)	330, 443, 501
HpyCH4III	ACNGT	3 cut(s)	94, 405, 426
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	5 cut(s)	18, 88, 350, 385, 415
HpySE526I	ACGT	1 cut(s)	10
Kpn2I	TCCGGA	1 cut(s)	273
Kzo9I	GATC	7 cut(s)	41, 157, 168, 270, 276, 283, 434
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	1 cut(s)	344
MaeII	ACGT	1 cut(s)	10
MalI	GATC	7 cut(s)	43, 159, 170, 272, 278, 285, 436
MboI	GATC	7 cut(s)	41, 157, 168, 270, 276, 283, 434
MboII	GAAGA	3 cut(s)	90, 98, 310
MflI	RGATCY	4 cut(s)	270, 276, 283, 434
MluCI	AATT	1 cut(s)	367
MmeI	TCCRAC	3 cut(s)	248, 401, 434
MnlI	CCTC	3 cut(s)	85, 316, 365
MroI	TCCGGA	1 cut(s)	273
MseI	TTAA	1 cut(s)	502
MspI	CCGG	1 cut(s)	274
MspR9I	CCNGG	4 cut(s)	288, 398, 409, 496
MvaI	CCWGG	4 cut(s)	288, 398, 409, 496
NdeII	GATC	7 cut(s)	41, 157, 168, 270, 276, 283, 434
NlaIV	GGNNCC	3 cut(s)	272, 285, 341
PaeR7I	CTCGAG	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	200
PfoI	TCCNGGA	1 cut(s)	494
PkrI	GCNGC	3 cut(s)	151, 154, 349
Psp6I	CCWGG	4 cut(s)	286, 396, 407, 494
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	4 cut(s)	286, 396, 407, 494
PspN4I	GGNNCC	3 cut(s)	272, 285, 341
PspPI	GGNCC	1 cut(s)	405
PspXI	VCTCGAGB	1 cut(s)	76
PsuI	RGATCY	4 cut(s)	270, 276, 283, 434
SaqAI	TTAA	1 cut(s)	502
SatI	GCNGC	3 cut(s)	150, 153, 348
Sau3AI	GATC	7 cut(s)	41, 157, 168, 270, 276, 283, 434
Sau96I	GGNCC	1 cut(s)	405
ScrFI	CCNGG	4 cut(s)	288, 398, 409, 496
SetI	ASST	7 cut(s)	13, 114, 241, 327, 345, 349, 454
SfaNI	GCATC	1 cut(s)	394
Sfr274I	CTCGAG	1 cut(s)	76
SinI	GGWCC	1 cut(s)	405
SlaI	CTCGAG	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	1 cut(s)	367
SsiI	CCGC	3 cut(s)	83, 149, 152
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	1 cut(s)	344
StyD4I	CCNGG	4 cut(s)	286, 396, 407, 494
TaaI	ACNGT	3 cut(s)	94, 405, 426
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	3 cut(s)	77, 215, 254
TasI	AATT	1 cut(s)	367
TauI	GCSGC	2 cut(s)	152, 155
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	502
Tru9I	TTAA	1 cut(s)	502
TseI	GCWGC	1 cut(s)	347
TspDTI	ATGAA	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	405
XapI	RAATTY	1 cut(s)	367
XhoI	CTCGAG	1 cut(s)	76
XmiI	GTMKAC	1 cut(s)	134
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.