Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0012688

Physical Location & Seq

Genomic Coordinates Reverse (-)

24916577 .. 24916885

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG176000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCTTCTCTGCAAAAACCCCAACCACCCGAGAACCCATTATGGATGCGCTTCTTCTTTTCTTTCTGCTGCTTTGCGGCGCACCCTTCTTTCCCTGCCCGCCCAGCGCAACCCCGAAAGCCCATCCAAGATCCACGCCCTCACCACCTCCAGGATCCTATTGGCGCATGGAACTGCTGGGATTTCTCCACGCCCACGCCCTCCTCTCCCTGCGACTGGCGCTGCGTCTTTTGCGACGATACTACTCGGGTCTCCGAGCTCTGCTTGCCTTCCTCCAACTCGGCGGCCGACTCAGTGACTCGCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048731 GO:0048856 GO:0071944 GO:0090696 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

102

Amino Acids

11.55

Weight (kDa)

6.79

Isoelectric Point (pI)

65.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012688)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476931 RchiOBHm_Chr4g0392271 RchiOBHm_Chr7g0187431
rosa_laevigata	RLG00000003932 RLG00000007563 RLG00000008341 RLG00000017893 RLG00000020729 RLG00000021147 RLG00000025201
rosa_multiflora	Rmu_co8156428.1_g000001 Rmu_sc0010379.1_g000011 Rmu_ssc0000312.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408140 Rroxscaffold_6G00420820
rosa_samantha	Rh1CG258700 Rh2BG566100 Rh6CG176000 Rh7BG010400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	77, 100, 284
AclWI	GGATC	3 cut(s)	125, 149, 162
AcoI	YGGCCR	1 cut(s)	285
AfiI	CCNNNNNNNGG	2 cut(s)	151, 216
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	1 cut(s)	256
AlwI	GGATC	3 cut(s)	125, 149, 162
Ama87I	CYCGRG	2 cut(s)	29, 246
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	2 cut(s)	69, 222
AspLEI	GCGC	5 cut(s)	51, 82, 109, 167, 222
AsuHPI	GGTGA	1 cut(s)	134
AvaI	CYCGRG	2 cut(s)	29, 246
BamHI	GGATCC	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	261
BauI	CACGAG	1 cut(s)	304
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	2 cut(s)	56, 209
BccI	CCATC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	256
BfoI	RGCGCY	1 cut(s)	223
BisI	GCNGC	4 cut(s)	70, 78, 223, 285
BlsI	GCNGC	4 cut(s)	71, 79, 224, 286
Bme1390I	CCNGG	1 cut(s)	152
BmeT110I	CYCGRG	2 cut(s)	29, 246
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 216
Bse1I	ACTGG	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	152
BseGI	GGATG	2 cut(s)	51, 123
BseLI	CCNNNNNNNGG	2 cut(s)	151, 216
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	193
BseX3I	CGGCCG	1 cut(s)	285
BseXI	GCAGC	2 cut(s)	56, 209
BseYI	CCCAGC	2 cut(s)	103, 177
Bsh1285I	CGRYCG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	287
BsiEI	CGRYCG	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	261
BsiHKCI	CYCGRG	2 cut(s)	29, 246
BslI	CCNNNNNNNGG	2 cut(s)	151, 216
BsmAI	GTCTC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	287
Bso31I	GGTCTC	1 cut(s)	256
BsoBI	CYCGRG	2 cut(s)	29, 246
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	2 cut(s)	130, 154
BspACI	CCGC	3 cut(s)	77, 100, 284
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	1 cut(s)	305
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	3 cut(s)	125, 149, 162
BspTNI	GGTCTC	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	221
BssMI	GATC	2 cut(s)	130, 154
BssSI	CACGAG	1 cut(s)	304
Bst2BI	CACGAG	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	100, 266
BstDEI	CTNAG	1 cut(s)	292
BstF5I	GGATG	2 cut(s)	51, 123
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	5 cut(s)	51, 82, 109, 167, 222
BstKTI	GATC	2 cut(s)	133, 157
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	2 cut(s)	130, 154
BstMCI	CGRYCG	1 cut(s)	288
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 219, 231, 265
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	56, 209
BstX2I	RGATCY	2 cut(s)	130, 154
BstYI	RGATCY	2 cut(s)	130, 154
BstZI	CGGCCG	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	287
BtsCI	GGATG	2 cut(s)	51, 123
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	2 cut(s)	100, 266
CfoI	GCGC	5 cut(s)	51, 82, 109, 167, 222
CseI	GACGC	1 cut(s)	214
CviAII	CATG	1 cut(s)	168
CviJI	RGCY	4 cut(s)	5, 121, 259, 287
CviKI_1	RGCY	4 cut(s)	5, 121, 259, 287
DdeI	CTNAG	1 cut(s)	292
DpnI	GATC	2 cut(s)	132, 156
DpnII	GATC	2 cut(s)	130, 154
EaeI	YGGCCR	1 cut(s)	285
EagI	CGGCCG	1 cut(s)	285
Ecl136II	GAGCTC	1 cut(s)	259
EclXI	CGGCCG	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	256
Eco52I	CGGCCG	1 cut(s)	285
Eco53kI	GAGCTC	1 cut(s)	259
Eco88I	CYCGRG	2 cut(s)	29, 246
EcoICRI	GAGCTC	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	261
FaeI	CATG	1 cut(s)	171
FaiI	YATR	2 cut(s)	43, 169
FatI	CATG	1 cut(s)	167
FauI	CCCGC	1 cut(s)	107
Fnu4HI	GCNGC	4 cut(s)	70, 78, 223, 285
FokI	GGATG	2 cut(s)	58, 110
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	4 cut(s)	70, 78, 223, 285
GlaI	GCGC	5 cut(s)	50, 81, 108, 166, 221
GluI	GCNGC	4 cut(s)	70, 78, 223, 285
GsaI	CCCAGC	2 cut(s)	107, 181
GsuI	CTGGAG	1 cut(s)	134
HaeII	RGCGCY	1 cut(s)	223
HaeIII	GGCC	1 cut(s)	287
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	5 cut(s)	51, 82, 109, 167, 222
Hin1II	CATG	1 cut(s)	171
Hin6I	GCGC	5 cut(s)	49, 80, 107, 165, 220
HinP1I	GCGC	5 cut(s)	49, 80, 107, 165, 220
HinfI	GANTC	2 cut(s)	290, 298
HphI	GGTGA	1 cut(s)	134
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	1 cut(s)	306
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	2 cut(s)	96, 279
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 219, 231, 265
HpyF3I	CTNAG	1 cut(s)	292
Hsp92II	CATG	1 cut(s)	171
HspAI	GCGC	5 cut(s)	49, 80, 107, 165, 220
Kzo9I	GATC	2 cut(s)	130, 154
LpnPI	CCDG	7 cut(s)	108, 117, 137, 163, 164, 202, 223
Lsp1109I	GCAGC	2 cut(s)	56, 209
LweI	GCATC	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	2 cut(s)	132, 156
MboI	GATC	2 cut(s)	130, 154
MboII	GAAGA	1 cut(s)	46
MflI	RGATCY	2 cut(s)	130, 154
MhlI	GDGCHC	1 cut(s)	261
MlyI	GAGTC	2 cut(s)	284, 292
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	5 cut(s)	150, 158, 211, 214, 283
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	4 cut(s)	104, 219, 231, 265
NdeII	GATC	2 cut(s)	130, 154
NlaIII	CATG	1 cut(s)	171
NlaIV	GGNNCC	1 cut(s)	156
NmeAIII	GCCGAG	1 cut(s)	260
NmuCI	GTSAC	1 cut(s)	295
PfoI	TCCNGGA	1 cut(s)	150
PkrI	GCNGC	4 cut(s)	71, 79, 224, 286
PleI	GAGTC	2 cut(s)	284, 292
PpsI	GAGTC	2 cut(s)	284, 292
Psp124BI	GAGCTC	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	150
PspFI	CCCAGC	2 cut(s)	103, 177
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	156
PsuI	RGATCY	2 cut(s)	130, 154
SacI	GAGCTC	1 cut(s)	261
SatI	GCNGC	4 cut(s)	70, 78, 223, 285
Sau3AI	GATC	2 cut(s)	130, 154
SchI	GAGTC	2 cut(s)	284, 292
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	2 cut(s)	150, 261
SfaNI	GCATC	1 cut(s)	36
SsiI	CCGC	3 cut(s)	77, 100, 284
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	150
TauI	GCSGC	2 cut(s)	80, 287
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	2 cut(s)	69, 222
Tsp45I	GTSAC	1 cut(s)	295
TspRI	CASTG	1 cut(s)	300
XcmI	CCANNNNNNNNNTGG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.