Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0012688

Physical Location & Seq

Genomic Coordinates Reverse (-)

42982115 .. 42983413

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025201

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCATCGCAAATGGCTTCTCTGCAAAAACCCCAACCACCCGAGAACTATAACAATCAAAACCCATTATGGATGCGCTTCTTCTTTTCTTTCTGCTGCTTTGCGGCGCACACTTCTAATTCCCTGCGCCGCGCAGCGCAACCTCGAAAGGCTAGCCAAGATCGACGCCCTCACCACCTTCAGGCTCTACCTCCAGGATCCGATTGGCGCATGGAACTGCTGGGATTTCTCCACGCCCTCCGCTCCCTGCGACTGGCACCGCCTCTTTTGCAACAATACTACTCGGGTCTCCGAGCTCCGCTTGCCTCGCCTCCAACTCGGCGGCCGACTCAGTGACTCGCTCGCGAATCTCAGGATGCTGGGGAAGCTGAGCCTCCGGTCAAACTCCTTCAAACAGACAACAAACAAAACTCGCCGATCTCAGGATTTCTCAAACGGAGCAGAGTTTGCAAATACAAGAAGAAAATGTTGCAAGCTGAGGATGGAGAATAGTTTCTGGTGGGGGAGGAGATGCCAGATACTTGGATGGATGCGGTGGCAGCATTATAAGGCAAAAGCAAGCAAAAGTTATAACCGGATGCGGAAACAATGGTGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048731 GO:0048856 GO:0071944 GO:0090696 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

200

Amino Acids

23.55

Weight (kDa)

10.81

Isoelectric Point (pI)

54.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012688)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476931 RchiOBHm_Chr4g0392271 RchiOBHm_Chr7g0187431
rosa_laevigata	RLG00000003932 RLG00000007563 RLG00000008341 RLG00000017893 RLG00000020729 RLG00000021147 RLG00000025201
rosa_multiflora	Rmu_co8156428.1_g000001 Rmu_sc0010379.1_g000011 Rmu_ssc0000312.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408140 Rroxscaffold_6G00420820
rosa_samantha	Rh1CG258700 Rh2BG566100 Rh6CG176000 Rh7BG010400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	546, 570
AccB1I	GGYRCC	1 cut(s)	255
AccBSI	CCGCTC	1 cut(s)	242
AccII	CGCG	2 cut(s)	131, 344
AciI	CCGC	8 cut(s)	103, 129, 240, 259, 298, 321, 532, 580
AclWI	GGATC	2 cut(s)	191, 204
AcoI	YGGCCR	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	163
AcyI	GRCGYC	1 cut(s)	165
AfiI	CCNNNNNNNGG	3 cut(s)	180, 252, 421
AgsI	TTSAA	1 cut(s)	391
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	3 cut(s)	295, 367, 475
AluI	AGCT	3 cut(s)	295, 367, 475
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	2 cut(s)	191, 204
Ama87I	CYCGRG	2 cut(s)	40, 282
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	3 cut(s)	95, 133, 538
Asp700I	GAANNNNTTC	1 cut(s)	491
AspLEI	GCGC	6 cut(s)	77, 108, 128, 133, 138, 209
AsuHPI	GGTGA	1 cut(s)	163
AsuNHI	GCTAGC	1 cut(s)	151
AvaI	CYCGRG	2 cut(s)	40, 282
BamHI	GGATCC	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	297
BbvCI	CCTCAGC	1 cut(s)	476
BbvI	GCAGC	3 cut(s)	82, 145, 550
BccI	CCATC	2 cut(s)	475, 519
BciT130I	CCWGG	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	1 cut(s)	152
BisI	GCNGC	6 cut(s)	96, 104, 129, 134, 322, 539
BlpI	GCTNAGC	1 cut(s)	368
BlsI	GCNGC	6 cut(s)	97, 105, 130, 135, 323, 540
Bme1390I	CCNGG	1 cut(s)	194
BmeT110I	CYCGRG	2 cut(s)	40, 282
BmiI	GGNNCC	2 cut(s)	198, 257
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	6 cut(s)	13, 62, 345, 500, 519, 567
BmtI	GCTAGC	1 cut(s)	155
BpmI	CTGGAG	1 cut(s)	176
Bpu10I	CCTNAGC	1 cut(s)	476
Bpu1102I	GCTNAGC	1 cut(s)	368
BsaHI	GRCGYC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	292
BsaWI	WCCGGW	2 cut(s)	375, 573
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 252, 421
Bse1I	ACTGG	1 cut(s)	257
BseBI	CCWGG	1 cut(s)	194
BseGI	GGATG	6 cut(s)	77, 360, 486, 530, 534, 582
BseLI	CCNNNNNNNGG	3 cut(s)	180, 252, 421
BseMII	CTCAG	5 cut(s)	343, 359, 364, 434, 467
BseNI	ACTGG	1 cut(s)	257
BseRI	GAGGAG	1 cut(s)	520
BseX3I	CGGCCG	1 cut(s)	322
BseXI	GCAGC	3 cut(s)	82, 145, 550
BseYI	CCCAGC	2 cut(s)	219, 358
Bsh1236I	CGCG	2 cut(s)	131, 344
Bsh1285I	CGRYCG	1 cut(s)	325
BshFI	GGCC	1 cut(s)	324
BshNI	GGYRCC	1 cut(s)	255
BsiEI	CGRYCG	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	297
BsiHKCI	CYCGRG	2 cut(s)	40, 282
BsiSI	CCGG	2 cut(s)	376, 574
BslI	CCNNNNNNNGG	3 cut(s)	180, 252, 421
BsmAI	GTCTC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	324
Bso31I	GGTCTC	1 cut(s)	292
BsoBI	CYCGRG	2 cut(s)	40, 282
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	3 cut(s)	159, 196, 416
Bsp1720I	GCTNAGC	1 cut(s)	368
Bsp68I	TCGCGA	1 cut(s)	344
BspACI	CCGC	8 cut(s)	103, 129, 240, 259, 298, 321, 532, 580
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	5 cut(s)	342, 360, 363, 433, 468
BspFNI	CGCG	2 cut(s)	131, 344
BspLI	GGNNCC	2 cut(s)	198, 257
BspOI	GCTAGC	1 cut(s)	155
BspPI	GGATC	2 cut(s)	191, 204
BspT107I	GGYRCC	1 cut(s)	255
BspTNI	GGTCTC	1 cut(s)	292
BsrBI	CCGCTC	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	257
BssMI	GATC	3 cut(s)	159, 196, 416
BssNI	GRCGYC	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	194
BstACI	GRCGYC	1 cut(s)	165
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstC8I	GCNNGC	5 cut(s)	153, 302, 342, 473, 559
BstDEI	CTNAG	5 cut(s)	329, 350, 368, 420, 476
BstF5I	GGATG	6 cut(s)	77, 360, 486, 530, 534, 582
BstFNI	CGCG	2 cut(s)	131, 344
BstHHI	GCGC	6 cut(s)	77, 108, 128, 133, 138, 209
BstKTI	GATC	3 cut(s)	162, 199, 419
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	3 cut(s)	159, 196, 416
BstMCI	CGRYCG	1 cut(s)	325
BstMWI	GCNNNNNNNGC	6 cut(s)	267, 301, 306, 364, 446, 538
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstUI	CGCG	2 cut(s)	131, 344
BstV1I	GCAGC	3 cut(s)	82, 145, 550
BstX2I	RGATCY	1 cut(s)	196
BstXI	CCANNNNNNTGG	1 cut(s)	521
BstYI	RGATCY	1 cut(s)	196
BstZI	CGGCCG	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	324
BtsCI	GGATG	6 cut(s)	77, 360, 486, 530, 534, 582
BtsIMutI	CAGTG	1 cut(s)	337
BtuMI	TCGCGA	1 cut(s)	344
Cac8I	GCNNGC	5 cut(s)	153, 302, 342, 473, 559
CfoI	GCGC	6 cut(s)	77, 108, 128, 133, 138, 209
CseI	GACGC	1 cut(s)	173
CviAII	CATG	1 cut(s)	210
CviJI	RGCY	9 cut(s)	16, 151, 155, 184, 295, 324, 367, 372, 475
CviKI_1	RGCY	9 cut(s)	16, 151, 155, 184, 295, 324, 367, 372, 475
DdeI	CTNAG	5 cut(s)	329, 350, 368, 420, 476
DpnI	GATC	3 cut(s)	161, 198, 418
DpnII	GATC	3 cut(s)	159, 196, 416
EaeI	YGGCCR	1 cut(s)	322
EagI	CGGCCG	1 cut(s)	322
Ecl136II	GAGCTC	1 cut(s)	295
EclXI	CGGCCG	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	297
Eco31I	GGTCTC	1 cut(s)	292
Eco52I	CGGCCG	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	163
Eco88I	CYCGRG	2 cut(s)	40, 282
EcoICRI	GAGCTC	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	297
FaeI	CATG	1 cut(s)	213
FaiI	YATR	5 cut(s)	50, 69, 211, 546, 570
FatI	CATG	1 cut(s)	209
Fnu4HI	GCNGC	6 cut(s)	96, 104, 129, 134, 322, 539
FokI	GGATG	6 cut(s)	84, 367, 493, 537, 541, 589
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	6 cut(s)	96, 104, 129, 134, 322, 539
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	6 cut(s)	76, 107, 127, 132, 137, 208
GluI	GCNGC	6 cut(s)	96, 104, 129, 134, 322, 539
GsaI	CCCAGC	2 cut(s)	223, 362
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	324
HapII	CCGG	2 cut(s)	376, 574
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	6 cut(s)	77, 108, 128, 133, 138, 209
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	1 cut(s)	213
Hin6I	GCGC	6 cut(s)	75, 106, 126, 131, 136, 207
HinP1I	GCGC	6 cut(s)	75, 106, 126, 131, 136, 207
HinfI	GANTC	3 cut(s)	327, 335, 346
HpaII	CCGG	2 cut(s)	376, 574
HphI	GGTGA	1 cut(s)	163
Hpy188I	TCNGA	2 cut(s)	201, 292
Hpy188III	TCNNGA	3 cut(s)	343, 352, 422
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	187, 397
HpyCH4V	TGCA	5 cut(s)	4, 24, 270, 449, 471
HpyF10VI	GCNNNNNNNGC	6 cut(s)	267, 301, 306, 364, 446, 538
HpyF3I	CTNAG	5 cut(s)	329, 350, 368, 420, 476
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	213
HspAI	GCGC	6 cut(s)	75, 106, 126, 131, 136, 207
Kzo9I	GATC	3 cut(s)	159, 196, 416
LmnI	GCTCC	3 cut(s)	247, 300, 437
Lsp1109I	GCAGC	3 cut(s)	82, 145, 550
LweI	GCATC	6 cut(s)	13, 62, 345, 500, 519, 567
MaeI	CTAG	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	3 cut(s)	161, 198, 418
MbiI	CCGCTC	1 cut(s)	242
MboI	GATC	3 cut(s)	159, 196, 416
MboII	GAAGA	2 cut(s)	72, 471
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	1 cut(s)	117
MlyI	GAGTC	2 cut(s)	321, 329
MmeI	TCCRAC	1 cut(s)	337
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	491
MspI	CCGG	2 cut(s)	376, 574
MspR9I	CCNGG	1 cut(s)	194
MteI	GCGCNGCGC	2 cut(s)	129, 134
MvaI	CCWGG	1 cut(s)	194
MvnI	CGCG	2 cut(s)	131, 344
MwoI	GCNNNNNNNGC	6 cut(s)	267, 301, 306, 364, 446, 538
NdeII	GATC	3 cut(s)	159, 196, 416
NheI	GCTAGC	1 cut(s)	151
NlaIII	CATG	1 cut(s)	213
NlaIV	GGNNCC	2 cut(s)	198, 257
NmeAIII	GCCGAG	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	332
NruI	TCGCGA	1 cut(s)	344
NsiI	ATGCAT	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	1 cut(s)	346
PfoI	TCCNGGA	1 cut(s)	192
PkrI	GCNGC	6 cut(s)	97, 105, 130, 135, 323, 540
PleI	GAGTC	2 cut(s)	321, 329
PpsI	GAGTC	2 cut(s)	321, 329
PsiI	TTATAA	2 cut(s)	546, 570
Psp124BI	GAGCTC	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	192
PspFI	CCCAGC	2 cut(s)	219, 358
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	198, 257
PsuI	RGATCY	1 cut(s)	196
RruI	TCGCGA	1 cut(s)	344
SacI	GAGCTC	1 cut(s)	297
SatI	GCNGC	6 cut(s)	96, 104, 129, 134, 322, 539
Sau3AI	GATC	3 cut(s)	159, 196, 416
SchI	GAGTC	2 cut(s)	321, 329
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	6 cut(s)	144, 179, 192, 297, 369, 477
SfaNI	GCATC	6 cut(s)	13, 62, 345, 500, 519, 567
Sse9I	AATT	1 cut(s)	117
SsiI	CCGC	8 cut(s)	103, 129, 240, 259, 298, 321, 532, 580
SspMI	CTAG	1 cut(s)	152
SstI	GAGCTC	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	192
TaqI	TCGA	2 cut(s)	144, 162
TasI	AATT	1 cut(s)	117
TauI	GCSGC	3 cut(s)	106, 131, 324
TfiI	GAWTC	1 cut(s)	346
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	3 cut(s)	95, 133, 538
Tsp45I	GTSAC	1 cut(s)	332
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	1 cut(s)	337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XmnI	GAANNNNTTC	1 cut(s)	491
XspI	CTAG	1 cut(s)	152
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.