Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0012688

Physical Location & Seq

Genomic Coordinates Reverse (-)

77957752 .. 77959334

Gene Structure 1583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG566100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGTTGTGCTCATATTGAGTCTTCCCAAGATTGGGTCTCCCGACCAGCTTAATCAGACTGCTGCACTGGAGTCATTTGACACTGATTGTAAGCCAGACCTCACAAATCGTTCGCAGTGCGATGCTTGCATGGCAGCTGTTTTAGAGGTTCAGCAAATCTTGTACATCCAGGATGGTAACAAGTCTCACTTCAATCTTTGTTGGGCGTCAATAACTCTGTATGCTGCTGGTATGATCAATGAGTTTGGACCTGAAAGTAATGGTAGTGTATCTTGTCTATTTGCTTTGTCAATGGATGCTCATGTCAGTCATGTGGGTTCGTCGAAAAAGAGCATTACTGCTCTTAGCAAGTCTATGCATTCAGTCAATGATCTTGGCAAGGAGTCAATTGAAATCTGGGCAGCGAATTTGAAGAACAGCAAACAACATATATGCATTCAGTCAATGATACAAAGCAATTCCGAAGGAGTTGTAAATCACCTTGATACAACAGTTCAACCCCGGTCTTTTCAACTCCTTGATTCAAATATGCATCACGTTTGGTCTTATGATGATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

186

Amino Acids

20.44

Weight (kDa)

5.45

Isoelectric Point (pI)

53.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012688)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476931 RchiOBHm_Chr4g0392271 RchiOBHm_Chr7g0187431
rosa_laevigata	RLG00000003932 RLG00000007563 RLG00000008341 RLG00000017893 RLG00000020729 RLG00000021147 RLG00000025201
rosa_multiflora	Rmu_co8156428.1_g000001 Rmu_sc0010379.1_g000011 Rmu_ssc0000312.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408140 Rroxscaffold_6G00420820
rosa_samantha	Rh1CG258700 Rh2BG566100 Rh6CG176000 Rh7BG010400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	406
AcyI	GRCGYC	1 cut(s)	206
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	32, 33
AgsI	TTSAA	6 cut(s)	193, 392, 412, 497, 512, 525
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	2 cut(s)	49, 137
AluI	AGCT	2 cut(s)	49, 137
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	2 cut(s)	42, 189
ApeKI	GCWGC	4 cut(s)	62, 134, 224, 401
ApoI	RAATTY	1 cut(s)	406
AspS9I	GGNCC	1 cut(s)	248
AsuC2I	CCSGG	1 cut(s)	502
AsuHPI	GGTGA	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	248
BaeI	ACNNNNGTAYC	2 cut(s)	477, 510
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	4 cut(s)	49, 146, 211, 413
BccI	CCATC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	170
BclI	TGATCA	2 cut(s)	234, 553
BcnI	CCSGG	1 cut(s)	502
BcoDI	GTCTC	2 cut(s)	42, 189
BisI	GCNGC	4 cut(s)	63, 135, 225, 402
BlsI	GCNGC	4 cut(s)	64, 136, 226, 403
Bme1390I	CCNGG	2 cut(s)	170, 502
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	248
BmrFI	CCNGG	2 cut(s)	170, 502
BmsI	GCATC	3 cut(s)	112, 286, 541
BpiI	GAAGAC	1 cut(s)	14
BpmI	CTGGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	502
BsaHI	GRCGYC	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	500
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 33
Bse1I	ACTGG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	500
BseGI	GGATG	3 cut(s)	165, 178, 301
BseLI	CCNNNNNNNGG	2 cut(s)	32, 33
BseNI	ACTGG	1 cut(s)	72
BseXI	GCAGC	4 cut(s)	49, 146, 211, 413
BsgI	GTGCAG	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	502
BslI	CCNNNNNNNGG	2 cut(s)	32, 33
BsmAI	GTCTC	2 cut(s)	42, 189
BsmI	GAATGC	2 cut(s)	358, 435
Bso31I	GGTCTC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp1407I	TGTACA	1 cut(s)	162
Bsp143I	GATC	3 cut(s)	234, 370, 553
BspTNI	GGTCTC	1 cut(s)	42
BsrGI	TGTACA	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	500
BssMI	GATC	3 cut(s)	234, 370, 553
BssNI	GRCGYC	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	493
BstACI	GRCGYC	1 cut(s)	206
BstAUI	TGTACA	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	344
BstF5I	GGATG	3 cut(s)	165, 178, 301
BstKTI	GATC	3 cut(s)	237, 373, 556
BstMAI	GTCTC	2 cut(s)	42, 189
BstMBI	GATC	3 cut(s)	234, 370, 553
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 131
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	2 cut(s)	168, 500
BstV1I	GCAGC	4 cut(s)	49, 146, 211, 413
BstV2I	GAAGAC	1 cut(s)	14
BtgZI	GCGATG	1 cut(s)	135
BtsCI	GGATG	3 cut(s)	165, 178, 301
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	3 cut(s)	65, 81, 122
Cac8I	GCNNGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	248
CseI	GACGC	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	3 cut(s)	130, 302, 311
CviJI	RGCY	3 cut(s)	49, 94, 137
CviKI_1	RGCY	3 cut(s)	49, 94, 137
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	344
DpnI	GATC	3 cut(s)	236, 372, 555
DpnII	GATC	3 cut(s)	234, 370, 553
Eco31I	GGTCTC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	168
EcoT22I	ATGCAT	3 cut(s)	360, 437, 534
FaeI	CATG	3 cut(s)	133, 305, 314
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FatI	CATG	3 cut(s)	129, 301, 310
FbaI	TGATCA	2 cut(s)	234, 553
Fnu4HI	GCNGC	4 cut(s)	63, 135, 225, 402
FokI	GGATG	3 cut(s)	152, 185, 308
Fsp4HI	GCNGC	4 cut(s)	63, 135, 225, 402
GluI	GCNGC	4 cut(s)	63, 135, 225, 402
GsuI	CTGGAG	1 cut(s)	89
HapII	CCGG	1 cut(s)	502
HgaI	GACGC	1 cut(s)	195
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	3 cut(s)	133, 305, 314
HinfI	GANTC	4 cut(s)	19, 71, 383, 521
HpaII	CCGG	1 cut(s)	502
HphI	GGTGA	1 cut(s)	470
Hpy188I	TCNGA	2 cut(s)	57, 463
Hpy188III	TCNNGA	1 cut(s)	41
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	1 cut(s)	458
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4IV	ACGT	1 cut(s)	537
HpyCH4V	TGCA	5 cut(s)	65, 129, 358, 435, 532
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 131
HpyF3I	CTNAG	1 cut(s)	344
HpySE526I	ACGT	1 cut(s)	537
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	3 cut(s)	133, 305, 314
Ksp22I	TGATCA	2 cut(s)	234, 553
Kzo9I	GATC	3 cut(s)	234, 370, 553
LpnPI	CCDG	9 cut(s)	53, 59, 108, 155, 182, 213, 264, 382, 515
Lsp1109I	GCAGC	4 cut(s)	49, 146, 211, 413
LweI	GCATC	3 cut(s)	112, 286, 541
MaeII	ACGT	1 cut(s)	537
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	3 cut(s)	236, 372, 555
MboI	GATC	3 cut(s)	234, 370, 553
MboII	GAAGA	2 cut(s)	14, 424
MfeI	CAATTG	1 cut(s)	387
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	3 cut(s)	387, 406, 457
MlyI	GAGTC	3 cut(s)	28, 80, 392
MnlI	CCTC	2 cut(s)	110, 139
Mph1103I	ATGCAT	3 cut(s)	360, 437, 534
MseI	TTAA	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	1 cut(s)	502
MspR9I	CCNGG	2 cut(s)	170, 502
MunI	CAATTG	1 cut(s)	387
Mva1269I	GAATGC	2 cut(s)	358, 435
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	126, 131
NciI	CCSGG	1 cut(s)	502
NdeII	GATC	3 cut(s)	234, 370, 553
NlaIII	CATG	3 cut(s)	133, 305, 314
NsiI	ATGCAT	3 cut(s)	360, 437, 534
PctI	GAATGC	2 cut(s)	358, 435
PfeI	GAWTC	1 cut(s)	521
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	4 cut(s)	64, 136, 226, 403
PleI	GAGTC	3 cut(s)	27, 79, 391
PpsI	GAGTC	3 cut(s)	27, 79, 391
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	248
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	4 cut(s)	63, 135, 225, 402
Sau3AI	GATC	3 cut(s)	234, 370, 553
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	3 cut(s)	28, 80, 392
ScrFI	CCNGG	2 cut(s)	170, 502
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	7 cut(s)	51, 102, 139, 150, 253, 483, 540
SfaNI	GCATC	3 cut(s)	112, 286, 541
SinI	GGWCC	1 cut(s)	248
Sse9I	AATT	3 cut(s)	387, 406, 457
StyD4I	CCNGG	2 cut(s)	168, 500
TaaI	ACNGT	1 cut(s)	493
TaiI	ACGT	1 cut(s)	540
TaqI	TCGA	1 cut(s)	323
TasI	AATT	3 cut(s)	387, 406, 457
TatI	WGTACW	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	3 cut(s)	72, 88, 122
TseI	GCWGC	4 cut(s)	62, 134, 224, 401
TspRI	CASTG	3 cut(s)	72, 88, 122
VpaK11BI	GGWCC	1 cut(s)	248
XapI	RAATTY	1 cut(s)	406
Zsp2I	ATGCAT	3 cut(s)	360, 437, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.