Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8156428.1

Orthogroup ID

OG0012688

Physical Location & Seq

Genomic Coordinates Forward (+)

111 .. 657

Gene Structure 547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8156428.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 547 bp

atgaaacccattatgcctgcgcttcttcttcttctctttcttctggtgctctgcggcgcacccttcttctcctgctgcgccgcccagcgcagccccgaaagcgtagccgagatcgacgccctcaccaccttcaggctcgacctccaggatccgattggcgcattgagcggctgggattcctccacgccttccgctccctgcgactggcgcggcgtcttttgcgacagcaccactcgggtctccgagctccgcttgcctcgcctccaactcggcggccgactcagtgactcgctcgccaagctcaccatgctggggaagctcagcctccggtcaaactccttcaacgggagcattcctgactcgctttcccagtgcacgcgcctacgcgccgtcttcctgcagaacaactctctctccgggaagctgcccccggagatcgggaacctgaccgggctgcagattctcaatgtcgccggtaaccgcctctccggcgaaatctccggcgagctccctccgagcctcgtgtacctcgatctctcctcgaacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048731 GO:0048856 GO:0071944 GO:0090696 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

182

Amino Acids

19.51

Weight (kDa)

6.23

Isoelectric Point (pI)

56.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012688)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476931 RchiOBHm_Chr4g0392271 RchiOBHm_Chr7g0187431
rosa_laevigata	RLG00000003932 RLG00000007563 RLG00000008341 RLG00000017893 RLG00000020729 RLG00000021147 RLG00000025201
rosa_multiflora	Rmu_co8156428.1_g000001 Rmu_sc0010379.1_g000011 Rmu_ssc0000312.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408140 Rroxscaffold_6G00420820
rosa_samantha	Rh1CG258700 Rh2BG566100 Rh6CG176000 Rh7BG010400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	168, 194
AccII	CGCG	3 cut(s)	210, 379, 387
AciI	CCGC	8 cut(s)	54, 81, 168, 192, 210, 250, 273, 481
AclWI	GGATC	2 cut(s)	143, 156
AcoI	YGGCCR	1 cut(s)	274
AcuI	CTGAAG	1 cut(s)	115
AcyI	GRCGYC	2 cut(s)	117, 213
AfaI	GTAC	1 cut(s)	527
AfiI	CCNNNNNNNGG	5 cut(s)	132, 204, 312, 345, 437
AgsI	TTSAA	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	5 cut(s)	247, 301, 319, 424, 508
AluI	AGCT	5 cut(s)	247, 301, 319, 424, 508
Alw21I	GWGCWC	4 cut(s)	51, 249, 377, 510
Alw26I	GTCTC	1 cut(s)	244
Alw44I	GTGCAC	1 cut(s)	373
AlwI	GGATC	2 cut(s)	143, 156
Ama87I	CYCGRG	1 cut(s)	234
AoxI	GGCC	1 cut(s)	274
ApaLI	GTGCAC	1 cut(s)	373
ApeKI	GCWGC	4 cut(s)	75, 90, 424, 454
AspLEI	GCGC	8 cut(s)	22, 59, 80, 90, 161, 210, 381, 389
AsuC2I	CCSGG	3 cut(s)	418, 431, 451
AsuHPI	GGTGA	2 cut(s)	115, 295
AvaI	CYCGRG	1 cut(s)	234
BaeGI	GKGCMC	1 cut(s)	377
BamHI	GGATCC	1 cut(s)	148
BanII	GRGCYC	2 cut(s)	249, 510
BauI	CACGAG	1 cut(s)	521
BbsI	GAAGAC	1 cut(s)	385
Bbv12I	GWGCWC	4 cut(s)	51, 249, 377, 510
BbvI	GCAGC	4 cut(s)	62, 102, 411, 441
BceAI	ACGGC	1 cut(s)	374
BciT130I	CCWGG	1 cut(s)	146
BcnI	CCSGG	3 cut(s)	418, 431, 451
BcoDI	GTCTC	1 cut(s)	244
BfmI	CTRYAG	2 cut(s)	398, 455
BglI	GCCNNNNNGGC	1 cut(s)	489
BisI	GCNGC	9 cut(s)	55, 76, 81, 91, 169, 211, 274, 425, 455
BlpI	GCTNAGC	1 cut(s)	320
BlsI	GCNGC	9 cut(s)	56, 77, 82, 92, 170, 212, 275, 426, 456
Bme1390I	CCNGG	4 cut(s)	146, 418, 431, 451
BmeT110I	CYCGRG	1 cut(s)	234
BmiI	GGNNCC	2 cut(s)	150, 443
BmrFI	CCNGG	4 cut(s)	146, 418, 431, 451
BmrI	ACTGGG	1 cut(s)	364
BmuI	ACTGGG	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	385
BpmI	CTGGAG	1 cut(s)	128
Bpu1102I	GCTNAGC	1 cut(s)	320
BpuMI	CCSGG	3 cut(s)	418, 431, 451
BsaHI	GRCGYC	2 cut(s)	117, 213
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	429
BsaWI	WCCGGW	1 cut(s)	327
BsaXI	ACNNNNNCTCC	4 cut(s)	398, 428, 470, 500
Bsc4I	CCNNNNNNNGG	5 cut(s)	132, 204, 312, 345, 437
Bse118I	RCCGGY	1 cut(s)	473
Bse1I	ACTGG	2 cut(s)	209, 370
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	429
BseLI	CCNNNNNNNGG	5 cut(s)	132, 204, 312, 345, 437
BseMII	CTCAG	2 cut(s)	295, 334
BseNI	ACTGG	2 cut(s)	209, 370
BseRI	GAGGAG	1 cut(s)	529
BseSI	GKGCMC	1 cut(s)	377
BseX3I	CGGCCG	1 cut(s)	274
BseXI	GCAGC	4 cut(s)	62, 102, 411, 441
BseYI	CCCAGC	3 cut(s)	84, 171, 310
Bsh1236I	CGCG	3 cut(s)	210, 379, 387
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	276
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	4 cut(s)	51, 249, 377, 510
BsiHKCI	CYCGRG	1 cut(s)	234
BsiSI	CCGG	7 cut(s)	328, 417, 431, 450, 474, 489, 501
BslI	CCNNNNNNNGG	5 cut(s)	132, 204, 312, 345, 437
BsmAI	GTCTC	1 cut(s)	244
BsmI	GAATGC	1 cut(s)	351
BsnI	GGCC	1 cut(s)	276
Bso31I	GGTCTC	1 cut(s)	244
BsoBI	CYCGRG	1 cut(s)	234
Bsp1286I	GDGCHC	4 cut(s)	51, 249, 377, 510
Bsp143I	GATC	4 cut(s)	111, 148, 435, 532
Bsp1720I	GCTNAGC	1 cut(s)	320
BspACI	CCGC	8 cut(s)	54, 81, 168, 192, 210, 250, 273, 481
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	2 cut(s)	294, 333
BspFNI	CGCG	3 cut(s)	210, 379, 387
BspLI	GGNNCC	2 cut(s)	150, 443
BspMAI	CTGCAG	2 cut(s)	402, 459
BspPI	GGATC	2 cut(s)	143, 156
BspTNI	GGTCTC	1 cut(s)	244
BsrBI	CCGCTC	2 cut(s)	168, 194
BsrFI	RCCGGY	1 cut(s)	473
BsrI	ACTGG	2 cut(s)	209, 370
BssAI	RCCGGY	1 cut(s)	473
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	4 cut(s)	111, 148, 435, 532
BssNI	GRCGYC	2 cut(s)	117, 213
BssSI	CACGAG	1 cut(s)	521
Bst2BI	CACGAG	1 cut(s)	521
Bst2UI	CCWGG	1 cut(s)	146
BstACI	GRCGYC	2 cut(s)	117, 213
BstC8I	GCNNGC	5 cut(s)	18, 254, 294, 377, 506
BstDEI	CTNAG	2 cut(s)	281, 320
BstEII	GGTNACC	1 cut(s)	476
BstFNI	CGCG	3 cut(s)	210, 379, 387
BstHHI	GCGC	8 cut(s)	22, 59, 80, 90, 161, 210, 381, 389
BstKTI	GATC	4 cut(s)	114, 151, 438, 535
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	4 cut(s)	111, 148, 435, 532
BstMCI	CGRYCG	1 cut(s)	277
BstNI	CCWGG	1 cut(s)	146
BstPI	GGTNACC	1 cut(s)	476
BstSCI	CCNGG	4 cut(s)	144, 416, 429, 449
BstSFI	CTRYAG	2 cut(s)	398, 455
BstSLI	GKGCMC	1 cut(s)	377
BstUI	CGCG	3 cut(s)	210, 379, 387
BstV1I	GCAGC	4 cut(s)	62, 102, 411, 441
BstV2I	GAAGAC	1 cut(s)	385
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BstZI	CGGCCG	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	276
BtsIMutI	CAGTG	2 cut(s)	289, 377
Cac8I	GCNNGC	5 cut(s)	18, 254, 294, 377, 506
CfoI	GCGC	8 cut(s)	22, 59, 80, 90, 161, 210, 381, 389
Cfr10I	RCCGGY	1 cut(s)	473
CseI	GACGC	2 cut(s)	125, 202
Csp6I	GTAC	1 cut(s)	526
CviAII	CATG	1 cut(s)	307
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	2 cut(s)	281, 320
DpnI	GATC	4 cut(s)	113, 150, 437, 534
DpnII	GATC	4 cut(s)	111, 148, 435, 532
EaeI	YGGCCR	1 cut(s)	274
EagI	CGGCCG	1 cut(s)	274
Ecl136II	GAGCTC	2 cut(s)	247, 508
EclXI	CGGCCG	1 cut(s)	274
Eco24I	GRGCYC	2 cut(s)	249, 510
Eco31I	GGTCTC	1 cut(s)	244
Eco52I	CGGCCG	1 cut(s)	274
Eco53kI	GAGCTC	2 cut(s)	247, 508
Eco57I	CTGAAG	1 cut(s)	115
Eco88I	CYCGRG	1 cut(s)	234
Eco91I	GGTNACC	1 cut(s)	476
EcoICRI	GAGCTC	2 cut(s)	247, 508
EcoO65I	GGTNACC	1 cut(s)	476
EcoRII	CCWGG	1 cut(s)	144
EcoT38I	GRGCYC	2 cut(s)	249, 510
FaeI	CATG	1 cut(s)	310
FaiI	YATR	2 cut(s)	14, 308
FatI	CATG	1 cut(s)	306
Fnu4HI	GCNGC	9 cut(s)	55, 76, 81, 91, 169, 211, 274, 425, 455
FriOI	GRGCYC	2 cut(s)	249, 510
Fsp4HI	GCNGC	9 cut(s)	55, 76, 81, 91, 169, 211, 274, 425, 455
GlaI	GCGC	8 cut(s)	21, 58, 79, 89, 160, 209, 380, 388
GluI	GCNGC	9 cut(s)	55, 76, 81, 91, 169, 211, 274, 425, 455
GsaI	CCCAGC	3 cut(s)	88, 175, 314
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	276
HapII	CCGG	7 cut(s)	328, 417, 431, 450, 474, 489, 501
HgaI	GACGC	2 cut(s)	125, 202
HhaI	GCGC	8 cut(s)	22, 59, 80, 90, 161, 210, 381, 389
Hin1I	GRCGYC	2 cut(s)	117, 213
Hin1II	CATG	1 cut(s)	310
Hin6I	GCGC	8 cut(s)	20, 57, 78, 88, 159, 208, 379, 387
HinP1I	GCGC	8 cut(s)	20, 57, 78, 88, 159, 208, 379, 387
HinfI	GANTC	5 cut(s)	176, 279, 287, 359, 460
HpaII	CCGG	7 cut(s)	328, 417, 431, 450, 474, 489, 501
HphI	GGTGA	2 cut(s)	115, 295
Hpy166II	GTNNAC	2 cut(s)	375, 526
Hpy188I	TCNGA	3 cut(s)	153, 244, 516
Hpy188III	TCNNGA	2 cut(s)	356, 439
Hpy8I	GTNNAC	2 cut(s)	375, 526
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	4 cut(s)	73, 139, 198, 349
HpyCH4V	TGCA	3 cut(s)	375, 400, 457
HpyF3I	CTNAG	2 cut(s)	281, 320
Hsp92I	GRCGYC	2 cut(s)	117, 213
Hsp92II	CATG	1 cut(s)	310
HspAI	GCGC	8 cut(s)	20, 57, 78, 88, 159, 208, 379, 387
Kzo9I	GATC	4 cut(s)	111, 148, 435, 532
LmnI	GCTCC	4 cut(s)	199, 252, 348, 513
Lsp1109I	GCAGC	4 cut(s)	62, 102, 411, 441
MaeIII	GTNAC	2 cut(s)	284, 476
MalI	GATC	4 cut(s)	113, 150, 437, 534
MbiI	CCGCTC	2 cut(s)	168, 194
MboI	GATC	4 cut(s)	111, 148, 435, 532
MboII	GAAGA	6 cut(s)	17, 20, 23, 32, 58, 385
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	4 cut(s)	51, 249, 377, 510
MlyI	GAGTC	3 cut(s)	273, 281, 353
MmeI	TCCRAC	1 cut(s)	289
MspI	CCGG	7 cut(s)	328, 417, 431, 450, 474, 489, 501
MspR9I	CCNGG	4 cut(s)	146, 418, 431, 451
Mva1269I	GAATGC	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	3 cut(s)	210, 379, 387
NciI	CCSGG	3 cut(s)	418, 431, 451
NdeII	GATC	4 cut(s)	111, 148, 435, 532
NlaIII	CATG	1 cut(s)	310
NlaIV	GGNNCC	2 cut(s)	150, 443
NmeAIII	GCCGAG	2 cut(s)	133, 249
NmuCI	GTSAC	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	528
PctI	GAATGC	1 cut(s)	351
PfeI	GAWTC	2 cut(s)	176, 460
PfoI	TCCNGGA	2 cut(s)	144, 416
PkrI	GCNGC	9 cut(s)	56, 77, 82, 92, 170, 212, 275, 426, 456
PleI	GAGTC	3 cut(s)	273, 281, 353
PpsI	GAGTC	3 cut(s)	273, 281, 353
Psp124BI	GAGCTC	2 cut(s)	249, 510
Psp6I	CCWGG	1 cut(s)	144
PspEI	GGTNACC	1 cut(s)	476
PspFI	CCCAGC	3 cut(s)	84, 171, 310
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	150, 443
PstI	CTGCAG	2 cut(s)	402, 459
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
SacI	GAGCTC	2 cut(s)	249, 510
SatI	GCNGC	9 cut(s)	55, 76, 81, 91, 169, 211, 274, 425, 455
Sau3AI	GATC	4 cut(s)	111, 148, 435, 532
SchI	GAGTC	3 cut(s)	273, 281, 353
ScrFI	CCNGG	4 cut(s)	146, 418, 431, 451
SduI	GDGCHC	4 cut(s)	51, 249, 377, 510
SetI	ASST	9 cut(s)	131, 144, 249, 303, 321, 426, 447, 510, 531
SfcI	CTRYAG	2 cut(s)	398, 455
SsiI	CCGC	8 cut(s)	54, 81, 168, 192, 210, 250, 273, 481
SstI	GAGCTC	2 cut(s)	249, 510
StyD4I	CCNGG	4 cut(s)	144, 416, 429, 449
TaqI	TCGA	4 cut(s)	114, 138, 531, 542
TauI	GCSGC	5 cut(s)	57, 83, 171, 213, 276
TfiI	GAWTC	2 cut(s)	176, 460
TscAI	CASTG	2 cut(s)	289, 377
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	4 cut(s)	75, 90, 424, 454
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	289, 377
VneI	GTGCAC	1 cut(s)	373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.