Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012688

Physical Location & Seq

Genomic Coordinates Forward (+)

72335492 .. 72336734

Gene Structure 1243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021147

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGAGAACTATGGCGGCACATCCCTTGGTGCCATATACCTCGAGTGCAGTGCAAATCGTCTCTTCTTTTCTTCCAATTTGCTTTTCAAAAGCGTGGTCTATGACTCCTCTTGCGGCTGTAGATTGCAATTCCCTCTCTCTCATGTCATCACAACTTGGGATTCAAGGCTGAGTTCGAGTTGGATAAGTGGGTGGCGACCTTCCAATGGGATATCGGAGGTTTTAGGTCGGATCCGGATCTGGGATCCAGGGACTATGCGGACTTCGAATTTTGGCAGTGACTTCTTGGAATCTCTGAGAGCAGGGATGTGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGTTCGAGATGGGCAAGTTTTCTACCCAGATCGGAGTCCAGTTGCCAGAGCAGCCACGGGTGTCGGAATTACTTTCTGGTTTCTGGTCCCCAGATTGGACCAGAGGGAGTTCACTACCAGAGACTTCATGTAAGAGACCGACAACGGTGCAGCTGTCCATGGGTGGTGGAGCTTGGAGTCGCGTGGACGAAACCGGGACGGGTGATTTCCAGTGCTGCGGATCTGGAAGGGTGGCCGGATGTCGGGTTGAAGCCAGGGTGCCCAAGTGCTTGGGTGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

22.57

Weight (kDa)

8.88

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012688)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476931 RchiOBHm_Chr4g0392271 RchiOBHm_Chr7g0187431
rosa_laevigata	RLG00000003932 RLG00000007563 RLG00000008341 RLG00000017893 RLG00000020729 RLG00000021147 RLG00000025201
rosa_multiflora	Rmu_co8156428.1_g000001 Rmu_sc0010379.1_g000011 Rmu_ssc0000312.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408140 Rroxscaffold_6G00420820
rosa_samantha	Rh1CG258700 Rh2BG566100 Rh6CG176000 Rh7BG010400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	29, 600, 616
AccII	CGCG	1 cut(s)	524
AccIII	TCCGGA	1 cut(s)	234
AciI	CCGC	5 cut(s)	15, 114, 259, 319, 560
AclWI	GGATC	6 cut(s)	226, 239, 239, 245, 252, 570
AcoI	YGGCCR	1 cut(s)	575
AcsI	RAATTY	1 cut(s)	268
AfiI	CCNNNNNNNGG	4 cut(s)	206, 241, 437, 584
AgsI	TTSAA	3 cut(s)	88, 165, 592
AjnI	CCWGG	2 cut(s)	247, 595
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AluBI	AGCT	2 cut(s)	495, 514
AluI	AGCT	2 cut(s)	495, 514
Alw26I	GTCTC	3 cut(s)	65, 457, 471
AlwI	GGATC	6 cut(s)	226, 239, 239, 245, 252, 570
Ama87I	CYCGRG	1 cut(s)	41
Aor13HI	TCCGGA	1 cut(s)	234
AoxI	GGCC	1 cut(s)	575
ApeKI	GCWGC	3 cut(s)	393, 492, 557
ApoI	RAATTY	1 cut(s)	268
ArsI	GACNNNNNNTTYG	2 cut(s)	81, 113
AspS9I	GGNCC	2 cut(s)	428, 440
AsuC2I	CCSGG	1 cut(s)	537
AsuHPI	GGTGA	1 cut(s)	556
AsuII	TTCGAA	1 cut(s)	266
AvaI	CYCGRG	1 cut(s)	41
AvaII	GGWCC	2 cut(s)	428, 440
BaeGI	GKGCMC	2 cut(s)	605, 621
BamHI	GGATCC	2 cut(s)	231, 244
BanI	GGYRCC	3 cut(s)	29, 600, 616
BbvI	GCAGC	3 cut(s)	405, 504, 544
BccI	CCATC	1 cut(s)	345
BcgI	CGANNNNNNTGC	4 cut(s)	32, 66, 471, 505
BciT130I	CCWGG	2 cut(s)	249, 597
BcnI	CCSGG	1 cut(s)	537
BcoDI	GTCTC	3 cut(s)	65, 457, 471
BfmI	CTRYAG	1 cut(s)	118
BisI	GCNGC	5 cut(s)	16, 115, 394, 493, 558
BlsI	GCNGC	5 cut(s)	17, 116, 395, 494, 559
Bme1390I	CCNGG	3 cut(s)	249, 537, 597
Bme18I	GGWCC	2 cut(s)	428, 440
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	428, 440
BmiI	GGNNCC	6 cut(s)	31, 233, 246, 430, 602, 618
BmrFI	CCNGG	3 cut(s)	249, 537, 597
Bpu14I	TTCGAA	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	537
BsaBI	GATNNNNATC	1 cut(s)	236
BsaI	GGTCTC	1 cut(s)	471
BsaJI	CCNNGG	5 cut(s)	25, 248, 397, 500, 596
BsaWI	WCCGGW	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 241, 437, 584
Bse1I	ACTGG	2 cut(s)	381, 552
Bse8I	GATNNNNATC	1 cut(s)	236
BseAI	TCCGGA	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	249, 597
BseDI	CCNNGG	5 cut(s)	25, 248, 397, 500, 596
BseGI	GGATG	3 cut(s)	20, 312, 586
BseJI	GATNNNNATC	1 cut(s)	236
BseLI	CCNNNNNNNGG	4 cut(s)	206, 241, 437, 584
BseMII	CTCAG	2 cut(s)	161, 287
BseNI	ACTGG	2 cut(s)	381, 552
BseRI	GAGGAG	1 cut(s)	97
BseSI	GKGCMC	2 cut(s)	605, 621
BseXI	GCAGC	3 cut(s)	405, 504, 544
BsgI	GTGCAG	2 cut(s)	67, 511
Bsh1236I	CGCG	1 cut(s)	524
BshFI	GGCC	1 cut(s)	577
BshNI	GGYRCC	3 cut(s)	29, 600, 616
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	3 cut(s)	235, 536, 578
BslFI	GGGAC	3 cut(s)	265, 414, 552
BslI	CCNNNNNNNGG	4 cut(s)	206, 241, 437, 584
BsmAI	GTCTC	3 cut(s)	65, 457, 471
BsmBI	CGTCTC	1 cut(s)	65
BsmFI	GGGAC	3 cut(s)	265, 414, 552
BsnI	GGCC	1 cut(s)	577
Bso31I	GGTCTC	1 cut(s)	471
BsoBI	CYCGRG	1 cut(s)	41
Bsp119I	TTCGAA	1 cut(s)	266
Bsp1286I	GDGCHC	2 cut(s)	605, 621
Bsp13I	TCCGGA	1 cut(s)	234
Bsp143I	GATC	5 cut(s)	231, 237, 244, 371, 562
Bsp19I	CCATGG	1 cut(s)	500
BspACI	CCGC	5 cut(s)	15, 114, 259, 319, 560
BspANI	GGCC	1 cut(s)	577
BspCNI	CTCAG	2 cut(s)	162, 288
BspEI	TCCGGA	1 cut(s)	234
BspFNI	CGCG	1 cut(s)	524
BspLI	GGNNCC	6 cut(s)	31, 233, 246, 430, 602, 618
BspPI	GGATC	6 cut(s)	226, 239, 239, 245, 252, 570
BspT104I	TTCGAA	1 cut(s)	266
BspT107I	GGYRCC	3 cut(s)	29, 600, 616
BspTNI	GGTCTC	1 cut(s)	471
BsrI	ACTGG	2 cut(s)	381, 552
BssECI	CCNNGG	5 cut(s)	25, 248, 397, 500, 596
BssMI	GATC	5 cut(s)	231, 237, 244, 371, 562
BssT1I	CCWWGG	2 cut(s)	25, 500
Bst2UI	CCWGG	2 cut(s)	249, 597
Bst4CI	ACNGT	1 cut(s)	489
Bst6I	CTCTTC	1 cut(s)	68
BstBI	TTCGAA	1 cut(s)	266
BstDEI	CTNAG	2 cut(s)	170, 296
BstDSI	CCRYGG	2 cut(s)	397, 500
BstF5I	GGATG	3 cut(s)	20, 312, 586
BstFNI	CGCG	1 cut(s)	524
BstKTI	GATC	5 cut(s)	234, 240, 247, 374, 565
BstMAI	GTCTC	3 cut(s)	65, 457, 471
BstMBI	GATC	5 cut(s)	231, 237, 244, 371, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	393
BstNI	CCWGG	2 cut(s)	249, 597
BstSCI	CCNGG	3 cut(s)	247, 535, 595
BstSFI	CTRYAG	1 cut(s)	118
BstSLI	GKGCMC	2 cut(s)	605, 621
BstUI	CGCG	1 cut(s)	524
BstV1I	GCAGC	3 cut(s)	405, 504, 544
BstX2I	RGATCY	4 cut(s)	231, 237, 244, 562
BstXI	CCANNNNNNTGG	1 cut(s)	612
BstYI	RGATCY	4 cut(s)	231, 237, 244, 562
BsuRI	GGCC	1 cut(s)	577
BtgI	CCRYGG	2 cut(s)	397, 500
BtsCI	GGATG	3 cut(s)	20, 312, 586
BtsI	GCAGTG	2 cut(s)	55, 283
BtsIMutI	CAGTG	3 cut(s)	55, 283, 559
Cfr13I	GGNCC	2 cut(s)	428, 440
CviAII	CATG	3 cut(s)	143, 470, 501
CviJI	RGCY	7 cut(s)	117, 169, 396, 495, 514, 577, 595
CviKI_1	RGCY	7 cut(s)	117, 169, 396, 495, 514, 577, 595
DdeI	CTNAG	2 cut(s)	170, 296
DpnI	GATC	5 cut(s)	233, 239, 246, 373, 564
DpnII	GATC	5 cut(s)	231, 237, 244, 371, 562
EaeI	YGGCCR	1 cut(s)	575
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco130I	CCWWGG	2 cut(s)	25, 500
Eco31I	GGTCTC	1 cut(s)	471
Eco32I	GATATC	1 cut(s)	213
Eco47I	GGWCC	2 cut(s)	428, 440
Eco88I	CYCGRG	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	247, 595
EcoRV	GATATC	1 cut(s)	213
EcoT14I	CCWWGG	2 cut(s)	25, 500
ErhI	CCWWGG	2 cut(s)	25, 500
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	3 cut(s)	146, 473, 504
FaiI	YATR	8 cut(s)	12, 35, 37, 102, 144, 257, 471, 502
FaqI	GGGAC	3 cut(s)	265, 414, 552
FatI	CATG	3 cut(s)	142, 469, 500
FauI	CCCGC	1 cut(s)	312
Fnu4HI	GCNGC	5 cut(s)	16, 115, 394, 493, 558
FokI	GGATG	3 cut(s)	7, 319, 593
Fsp4HI	GCNGC	5 cut(s)	16, 115, 394, 493, 558
GluI	GCNGC	5 cut(s)	16, 115, 394, 493, 558
HaeIII	GGCC	1 cut(s)	577
HapII	CCGG	3 cut(s)	235, 536, 578
Hin1II	CATG	3 cut(s)	146, 473, 504
HinfI	GANTC	5 cut(s)	104, 161, 290, 377, 519
HpaII	CCGG	3 cut(s)	235, 536, 578
HphI	GGTGA	1 cut(s)	556
Hpy166II	GTNNAC	2 cut(s)	454, 528
Hpy188I	TCNGA	5 cut(s)	217, 231, 297, 376, 408
Hpy188III	TCNNGA	3 cut(s)	235, 348, 566
Hpy8I	GTNNAC	2 cut(s)	454, 528
HpyAV	CCTTC	2 cut(s)	210, 563
HpyCH4III	ACNGT	1 cut(s)	489
HpyCH4V	TGCA	4 cut(s)	48, 53, 127, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	393
HpyF3I	CTNAG	2 cut(s)	170, 296
Hsp92II	CATG	3 cut(s)	146, 473, 504
Kpn2I	TCCGGA	1 cut(s)	234
Kzo9I	GATC	5 cut(s)	231, 237, 244, 371, 562
LmnI	GCTCC	1 cut(s)	511
Lsp1109I	GCAGC	3 cut(s)	405, 504, 544
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	5 cut(s)	233, 239, 246, 373, 564
MboI	GATC	5 cut(s)	231, 237, 244, 371, 562
MboII	GAAGA	2 cut(s)	55, 63
MflI	RGATCY	4 cut(s)	231, 237, 244, 562
MhlI	GDGCHC	2 cut(s)	605, 621
MluCI	AATT	4 cut(s)	76, 128, 268, 409
MlyI	GAGTC	3 cut(s)	98, 386, 528
MmeI	TCCRAC	3 cut(s)	161, 209, 386
MnlI	CCTC	5 cut(s)	50, 118, 144, 211, 439
MroI	TCCGGA	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	495
MspI	CCGG	3 cut(s)	235, 536, 578
MspR9I	CCNGG	3 cut(s)	249, 537, 597
MvaI	CCWGG	2 cut(s)	249, 597
MvnI	CGCG	1 cut(s)	524
MwoI	GCNNNNNNNGC	1 cut(s)	393
NciI	CCSGG	1 cut(s)	537
NcoI	CCATGG	1 cut(s)	500
NdeII	GATC	5 cut(s)	231, 237, 244, 371, 562
NlaIII	CATG	3 cut(s)	146, 473, 504
NlaIV	GGNNCC	6 cut(s)	31, 233, 246, 430, 602, 618
NmuCI	GTSAC	1 cut(s)	278
NspV	TTCGAA	1 cut(s)	266
PaeR7I	CTCGAG	1 cut(s)	41
PfeI	GAWTC	2 cut(s)	161, 290
PkrI	GCNGC	5 cut(s)	17, 116, 395, 494, 559
PleI	GAGTC	3 cut(s)	98, 385, 527
PpsI	GAGTC	3 cut(s)	98, 385, 527
Psp6I	CCWGG	2 cut(s)	247, 595
PspGI	CCWGG	2 cut(s)	247, 595
PspN4I	GGNNCC	6 cut(s)	31, 233, 246, 430, 602, 618
PspPI	GGNCC	2 cut(s)	428, 440
PspXI	VCTCGAGB	1 cut(s)	41
PsuI	RGATCY	4 cut(s)	231, 237, 244, 562
PvuII	CAGCTG	1 cut(s)	495
SatI	GCNGC	5 cut(s)	16, 115, 394, 493, 558
Sau3AI	GATC	5 cut(s)	231, 237, 244, 371, 562
Sau96I	GGNCC	2 cut(s)	428, 440
SchI	GAGTC	3 cut(s)	98, 386, 528
ScrFI	CCNGG	3 cut(s)	249, 537, 597
SduI	GDGCHC	2 cut(s)	605, 621
SetI	ASST	6 cut(s)	42, 202, 222, 229, 497, 516
SfcI	CTRYAG	1 cut(s)	118
Sfr274I	CTCGAG	1 cut(s)	41
SfuI	TTCGAA	1 cut(s)	266
SinI	GGWCC	2 cut(s)	428, 440
SlaI	CTCGAG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	4 cut(s)	76, 128, 268, 409
SsiI	CCGC	5 cut(s)	15, 114, 259, 319, 560
StyD4I	CCNGG	3 cut(s)	247, 535, 595
StyI	CCWWGG	2 cut(s)	25, 500
TaaI	ACNGT	1 cut(s)	489
TaqI	TCGA	4 cut(s)	42, 176, 266, 347
TaqII	GACCGA	1 cut(s)	495
TasI	AATT	4 cut(s)	76, 128, 268, 409
TauI	GCSGC	2 cut(s)	18, 117
TfiI	GAWTC	2 cut(s)	161, 290
TscAI	CASTG	3 cut(s)	55, 283, 559
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	3 cut(s)	393, 492, 557
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	458
TspRI	CASTG	3 cut(s)	55, 283, 559
VpaK11BI	GGWCC	2 cut(s)	428, 440
XapI	RAATTY	1 cut(s)	268
XhoI	CTCGAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.