Rmu_sc0010379.1_g000011
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010379.1
OG0012688
Physical Location & Seq
Forward (+)
40913 .. 41284
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010379.1_g000011.1.cds

Sequence Viewer

Length: 372 bp
atgaaaccaattatggatgctcttcttcttttctttctgttgctttatggcgcacccttttttccctgcgccgcccagtgcaaccccaaaaacctagccgagatcgaggccctcaccaccttcaggctcaacttccaggatccgattggcccattgaacggctgggattcctccacgcccttcgctccctacgactggggctgtatcttttgcgataatactactcgggtctccgagctccacttaagtcacctccaactcggcggtctacttaatgactcgctcgagaatctcaggatgctgggaaagctgagcctccggtcaaactccttcaaacagacaacaaacaaaactcaccgatctcaggcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048731 GO:0048856 GO:0071944 GO:0090696 GO:0099402
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

123

Amino Acids

13.82

Weight (kDa)

6.8

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 268
AciI CCGC 2 cut(s) 72, 264
AclWI GGATC 2 cut(s) 134, 147
AcuI CTGAAG 1 cut(s) 106
AfiI CCNNNNNNNGG 4 cut(s) 123, 158, 195, 364
AflII CTTAAG 1 cut(s) 244
AgsI TTSAA 2 cut(s) 157, 334
AjnI CCWGG 1 cut(s) 135
AluBI AGCT 2 cut(s) 238, 310
AluI AGCT 2 cut(s) 238, 310
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 1 cut(s) 235
AlwI GGATC 2 cut(s) 134, 147
Ama87I CYCGRG 2 cut(s) 225, 284
AoxI GGCC 3 cut(s) 108, 148, 366
AspLEI GCGC 2 cut(s) 53, 71
AspS9I GGNCC 2 cut(s) 109, 149
AsuHPI GGTGA 3 cut(s) 106, 242, 347
AvaI CYCGRG 2 cut(s) 225, 284
BamHI GGATCC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 240
BceAI ACGGC 1 cut(s) 175
BciT130I CCWGG 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 235
BfaI CTAG 1 cut(s) 95
BfrI CTTAAG 1 cut(s) 244
BisI GCNGC 1 cut(s) 72
BlpI GCTNAGC 1 cut(s) 311
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 137
BmeT110I CYCGRG 2 cut(s) 225, 284
BmgT120I GGNCC 2 cut(s) 109, 149
BmiI GGNNCC 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 137
BmrI ACTGGG 2 cut(s) 70, 205
BmsI GCATC 2 cut(s) 7, 288
BmuI ACTGGG 2 cut(s) 70, 205
Bpu1102I GCTNAGC 1 cut(s) 311
BsaI GGTCTC 1 cut(s) 235
BsaWI WCCGGW 1 cut(s) 318
Bsc4I CCNNNNNNNGG 4 cut(s) 123, 158, 195, 364
Bse1I ACTGG 2 cut(s) 76, 200
BseBI CCWGG 1 cut(s) 137
BseGI GGATG 2 cut(s) 22, 303
BseLI CCNNNNNNNGG 4 cut(s) 123, 158, 195, 364
BseMII CTCAG 2 cut(s) 302, 307
BseNI ACTGG 2 cut(s) 76, 200
BseYI CCCAGC 2 cut(s) 162, 301
BshFI GGCC 3 cut(s) 110, 150, 368
BsiHKAI GWGCWC 1 cut(s) 240
BsiHKCI CYCGRG 2 cut(s) 225, 284
BsiSI CCGG 1 cut(s) 319
BslI CCNNNNNNNGG 4 cut(s) 123, 158, 195, 364
BsmAI GTCTC 1 cut(s) 235
BsnI GGCC 3 cut(s) 110, 150, 368
Bso31I GGTCTC 1 cut(s) 235
BsoBI CYCGRG 2 cut(s) 225, 284
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 3 cut(s) 102, 139, 359
Bsp1720I GCTNAGC 1 cut(s) 311
BspACI CCGC 2 cut(s) 72, 264
BspANI GGCC 3 cut(s) 110, 150, 368
BspCNI CTCAG 2 cut(s) 303, 306
BspLI GGNNCC 1 cut(s) 141
BspPI GGATC 2 cut(s) 134, 147
BspQI GCTCTTC 1 cut(s) 27
BspTI CTTAAG 1 cut(s) 244
BspTNI GGTCTC 1 cut(s) 235
BsrI ACTGG 2 cut(s) 76, 200
BssMI GATC 3 cut(s) 102, 139, 359
Bst2UI CCWGG 1 cut(s) 137
Bst6I CTCTTC 1 cut(s) 27
BstAFI CTTAAG 1 cut(s) 244
BstDEI CTNAG 3 cut(s) 293, 311, 363
BstF5I GGATG 2 cut(s) 22, 303
BstHHI GCGC 2 cut(s) 53, 71
BstKTI GATC 3 cut(s) 105, 142, 362
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 3 cut(s) 102, 139, 359
BstMWI GCNNNNNNNGC 1 cut(s) 307
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 135
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 3 cut(s) 110, 150, 368
BtsCI GGATG 2 cut(s) 22, 303
BtsIMutI CAGTG 1 cut(s) 83
CfoI GCGC 2 cut(s) 53, 71
Cfr13I GGNCC 2 cut(s) 109, 149
DdeI CTNAG 3 cut(s) 293, 311, 363
DpnI GATC 3 cut(s) 104, 141, 361
DpnII GATC 3 cut(s) 102, 139, 359
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Ecl136II GAGCTC 1 cut(s) 238
Eco147I AGGCCT 1 cut(s) 368
Eco24I GRGCYC 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 106
Eco88I CYCGRG 2 cut(s) 225, 284
EcoICRI GAGCTC 1 cut(s) 238
EcoO109I RGGNCCY 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 135
EcoT38I GRGCYC 1 cut(s) 240
FaiI YATR 2 cut(s) 14, 48
FblI GTMKAC 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 2 cut(s) 29, 310
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 95
GlaI GCGC 2 cut(s) 52, 70
GluI GCNGC 1 cut(s) 72
GsaI CCCAGC 2 cut(s) 166, 305
HaeIII GGCC 3 cut(s) 110, 150, 368
HapII CCGG 1 cut(s) 319
HhaI GCGC 2 cut(s) 53, 71
Hin6I GCGC 2 cut(s) 51, 69
HinP1I GCGC 2 cut(s) 51, 69
HinfI GANTC 3 cut(s) 167, 278, 289
HpaII CCGG 1 cut(s) 319
HphI GGTGA 3 cut(s) 106, 242, 347
Hpy166II GTNNAC 1 cut(s) 269
Hpy188I TCNGA 2 cut(s) 144, 235
Hpy188III TCNNGA 2 cut(s) 286, 295
Hpy8I GTNNAC 1 cut(s) 269
HpyAV CCTTC 3 cut(s) 130, 190, 340
HpyCH4V TGCA 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 1 cut(s) 307
HpyF3I CTNAG 3 cut(s) 293, 311, 363
HspAI GCGC 2 cut(s) 51, 69
Kzo9I GATC 3 cut(s) 102, 139, 359
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 2 cut(s) 190, 243
LweI GCATC 2 cut(s) 7, 288
MaeI CTAG 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 248
MalI GATC 3 cut(s) 104, 141, 361
MboI GATC 3 cut(s) 102, 139, 359
MboII GAAGA 2 cut(s) 14, 17
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 1 cut(s) 9
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 5 cut(s) 100, 122, 181, 263, 326
MseI TTAA 2 cut(s) 245, 273
MspCI CTTAAG 1 cut(s) 244
MspI CCGG 1 cut(s) 319
MspR9I CCNGG 1 cut(s) 137
MvaI CCWGG 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 307
NdeII GATC 3 cut(s) 102, 139, 359
NlaIV GGNNCC 1 cut(s) 141
NmeAIII GCCGAG 2 cut(s) 124, 240
NmuCI GTSAC 1 cut(s) 248
PaeR7I CTCGAG 1 cut(s) 284
PceI AGGCCT 1 cut(s) 368
PciSI GCTCTTC 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PfeI GAWTC 2 cut(s) 167, 289
PfoI TCCNGGA 1 cut(s) 135
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
Psp124BI GAGCTC 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 135
PspFI CCCAGC 2 cut(s) 162, 301
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 2 cut(s) 109, 149
PsuI RGATCY 1 cut(s) 139
SacI GAGCTC 1 cut(s) 240
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 2 cut(s) 245, 273
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 3 cut(s) 102, 139, 359
Sau96I GGNCC 2 cut(s) 109, 149
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 1 cut(s) 240
SetI ASST 5 cut(s) 96, 122, 240, 255, 312
SfaNI GCATC 2 cut(s) 7, 288
Sfr274I CTCGAG 1 cut(s) 284
SlaI CTCGAG 1 cut(s) 284
SmlI CTYRAG 2 cut(s) 244, 284
SmoI CTYRAG 2 cut(s) 244, 284
Sse9I AATT 1 cut(s) 9
SseBI AGGCCT 1 cut(s) 368
SsiI CCGC 2 cut(s) 72, 264
SspMI CTAG 1 cut(s) 95
SstI GAGCTC 1 cut(s) 240
StuI AGGCCT 1 cut(s) 368
StyD4I CCNGG 1 cut(s) 135
TaqI TCGA 2 cut(s) 105, 285
TasI AATT 1 cut(s) 9
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 2 cut(s) 167, 289
Tru1I TTAA 2 cut(s) 245, 273
Tru9I TTAA 2 cut(s) 245, 273
TscAI CASTG 1 cut(s) 83
TseFI GTSAC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 83
Vha464I CTTAAG 1 cut(s) 244
XcmI CCANNNNNNNNNTGG 2 cut(s) 143, 159
XhoI CTCGAG 1 cut(s) 284
XmiI GTMKAC 1 cut(s) 268
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.