Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0012688

Physical Location & Seq

Genomic Coordinates Reverse (-)

18205793 .. 18206478

Gene Structure 686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007563

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGGTGGGAGTTTCTGTAATCTTCTTCATCTCCGATGGAGAACACTGTCGGCGCTTCCCCTGGCATCGTATACCTCGAGAGCGGTGCAAACCGTCTCTTCTTTTCTTCCGTTTTGCTCCATGAAGGCGTGGTCTTCGTCTTCTTTTGTGGTGGTGAATCGTGATTTTCTCCCTCTCTCTCAAGTCGCCATGACCTGGGAACTATTGTTGAATTCGGTCTGGCGAACTAGTGAGGGTGGTTGGCTCGGTTTCGATGGAAAAAGGGAGGTCTTGGGTCGGATCCGGATTTGGGACCCAGGTTCTTTGATGGCGGCATGGAAACCCAATCTAGAAGTTGGATGGCGGAGGTCGTTGGCTGCTGGTTTTCGATGGTTTCTCAGCGGCGGTGGACAATTGTTGGCGGCGGCGAGATTGTCTGTCAGAATTGAAGGGTTTAGCTGCTATGGGTTTGCCATCGATCTGTTTGAGGCTGTGGATCCTTCTCTCAGGCGAGCGGCGGCGGCACTGCAATGCGCGGGGTACTGGGATGCTCCTTCTCCAGCAAAGGGCGGTGGAGCAGAGATGGAGGCCGTGGTCAGGGAAGGGATGGGTGCCAAGAGAGATTTTGGGTGCCCAAAGCAGGTTGTGGACTTGGGCCTTTGCTCTGTTGGACTGCCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

23.97

Weight (kDa)

9.35

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012688)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476931 RchiOBHm_Chr4g0392271 RchiOBHm_Chr7g0187431
rosa_laevigata	RLG00000003932 RLG00000007563 RLG00000008341 RLG00000017893 RLG00000020729 RLG00000021147 RLG00000025201
rosa_multiflora	Rmu_co8156428.1_g000001 Rmu_sc0010379.1_g000011 Rmu_ssc0000312.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408140 Rroxscaffold_6G00420820
rosa_samantha	Rh1CG258700 Rh2BG566100 Rh6CG176000 Rh7BG010400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	610
AccB1I	GGYRCC	2 cut(s)	590, 609
AccB7I	CCANNNNNTGG	1 cut(s)	195
AccBSI	CCGCTC	2 cut(s)	83, 494
AccI	GTMKAC	1 cut(s)	71
AccII	CGCG	1 cut(s)	515
AccIII	TCCGGA	1 cut(s)	282
AclWI	GGATC	4 cut(s)	274, 287, 470, 483
AcsI	RAATTY	1 cut(s)	211
AfaI	GTAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	5 cut(s)	195, 289, 545, 576, 619
AgsI	TTSAA	2 cut(s)	211, 428
AhlI	ACTAGT	1 cut(s)	227
AjnI	CCWGG	3 cut(s)	60, 194, 295
AluBI	AGCT	1 cut(s)	438
AluI	AGCT	1 cut(s)	438
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	4 cut(s)	274, 287, 470, 483
Ama87I	CYCGRG	1 cut(s)	76
Aor13HI	TCCGGA	1 cut(s)	282
AoxI	GGCC	2 cut(s)	567, 634
ApeKI	GCWGC	2 cut(s)	356, 438
ApoI	RAATTY	1 cut(s)	211
AspLEI	GCGC	2 cut(s)	55, 515
AspS9I	GGNCC	2 cut(s)	292, 634
AsuHPI	GGTGA	1 cut(s)	166
AvaI	CYCGRG	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	292
BaeGI	GKGCMC	1 cut(s)	614
BamHI	GGATCC	2 cut(s)	279, 475
BanI	GGYRCC	2 cut(s)	590, 609
BbsI	GAAGAC	2 cut(s)	126, 132
BbvI	GCAGC	2 cut(s)	343, 425
BccI	CCATC	8 cut(s)	30, 248, 301, 333, 363, 461, 556, 580
BceAI	ACGGC	1 cut(s)	554
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BciT130I	CCWGG	3 cut(s)	62, 196, 297
BcoDI	GTCTC	1 cut(s)	100
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	2 cut(s)	228, 329
BfoI	RGCGCY	1 cut(s)	56
BfuAI	ACCTGC	1 cut(s)	610
BisI	GCNGC	9 cut(s)	312, 357, 382, 402, 405, 439, 495, 498, 501
BlsI	GCNGC	9 cut(s)	313, 358, 383, 403, 406, 440, 496, 499, 502
Bme1390I	CCNGG	3 cut(s)	62, 196, 297
Bme18I	GGWCC	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	292, 634
BmiI	GGNNCC	6 cut(s)	281, 293, 294, 477, 592, 611
BmrFI	CCNGG	3 cut(s)	62, 196, 297
BmrI	ACTGGG	1 cut(s)	532
BmsI	GCATC	2 cut(s)	74, 517
BmuI	ACTGGG	1 cut(s)	532
BpiI	GAAGAC	2 cut(s)	126, 132
BpmI	CTGGAG	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	165
Bsa29I	ATCGAT	1 cut(s)	456
BsaJI	CCNNGG	4 cut(s)	60, 195, 295, 570
BsaWI	WCCGGW	1 cut(s)	282
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	5 cut(s)	195, 289, 545, 576, 619
Bse1I	ACTGG	1 cut(s)	527
Bse3DI	GCAATG	1 cut(s)	515
BseAI	TCCGGA	1 cut(s)	282
BseBI	CCWGG	3 cut(s)	62, 196, 297
BseCI	ATCGAT	1 cut(s)	456
BseDI	CCNNGG	4 cut(s)	60, 195, 295, 570
BseGI	GGATG	3 cut(s)	344, 532, 591
BseLI	CCNNNNNNNGG	5 cut(s)	195, 289, 545, 576, 619
BseMI	GCAATG	1 cut(s)	515
BseMII	CTCAG	2 cut(s)	391, 499
BseNI	ACTGG	1 cut(s)	527
BseSI	GKGCMC	1 cut(s)	614
BseXI	GCAGC	2 cut(s)	343, 425
Bsh1236I	CGCG	1 cut(s)	515
BshFI	GGCC	2 cut(s)	569, 636
BshNI	GGYRCC	2 cut(s)	590, 609
BshVI	ATCGAT	1 cut(s)	456
BsiHKCI	CYCGRG	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	283
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	5 cut(s)	195, 289, 545, 576, 619
BsmAI	GTCTC	1 cut(s)	100
BsmBI	CGTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	2 cut(s)	569, 636
BsoBI	CYCGRG	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	614
Bsp13I	TCCGGA	1 cut(s)	282
Bsp143I	GATC	3 cut(s)	279, 457, 475
BspANI	GGCC	2 cut(s)	569, 636
BspCNI	CTCAG	2 cut(s)	390, 498
BspDI	ATCGAT	1 cut(s)	456
BspEI	TCCGGA	1 cut(s)	282
BspFNI	CGCG	1 cut(s)	515
BspLI	GGNNCC	6 cut(s)	281, 293, 294, 477, 592, 611
BspMI	ACCTGC	1 cut(s)	610
BspPI	GGATC	4 cut(s)	274, 287, 470, 483
BspT107I	GGYRCC	2 cut(s)	590, 609
BsrBI	CCGCTC	2 cut(s)	83, 494
BsrDI	GCAATG	1 cut(s)	515
BsrI	ACTGG	1 cut(s)	527
BssECI	CCNNGG	4 cut(s)	60, 195, 295, 570
BssMI	GATC	3 cut(s)	279, 457, 475
BssNAI	GTATAC	1 cut(s)	72
Bst1107I	GTATAC	1 cut(s)	72
Bst2UI	CCWGG	3 cut(s)	62, 196, 297
Bst4CI	ACNGT	2 cut(s)	48, 94
Bst6I	CTCTTC	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	2 cut(s)	377, 485
BstDSI	CCRYGG	1 cut(s)	570
BstF5I	GGATG	3 cut(s)	344, 532, 591
BstFNI	CGCG	1 cut(s)	515
BstH2I	RGCGCY	1 cut(s)	56
BstHHI	GCGC	2 cut(s)	55, 515
BstKTI	GATC	3 cut(s)	282, 460, 478
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	3 cut(s)	279, 457, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNI	CCWGG	3 cut(s)	62, 196, 297
BstSCI	CCNGG	3 cut(s)	60, 194, 295
BstSLI	GKGCMC	1 cut(s)	614
BstUI	CGCG	1 cut(s)	515
BstV1I	GCAGC	2 cut(s)	343, 425
BstV2I	GAAGAC	2 cut(s)	126, 132
BstX2I	RGATCY	2 cut(s)	279, 475
BstYI	RGATCY	2 cut(s)	279, 475
BstZ17I	GTATAC	1 cut(s)	72
Bsu15I	ATCGAT	1 cut(s)	456
BsuRI	GGCC	2 cut(s)	569, 636
BsuTUI	ATCGAT	1 cut(s)	456
BtgI	CCRYGG	1 cut(s)	570
BtsCI	GGATG	3 cut(s)	344, 532, 591
BtsI	GCAGTG	1 cut(s)	503
BtsIMutI	CAGTG	2 cut(s)	44, 503
BveI	ACCTGC	1 cut(s)	610
Cac8I	GCNNGC	1 cut(s)	492
CfoI	GCGC	2 cut(s)	55, 515
Cfr13I	GGNCC	2 cut(s)	292, 634
ClaI	ATCGAT	1 cut(s)	456
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	3 cut(s)	121, 190, 315
CviJI	RGCY	6 cut(s)	244, 356, 438, 470, 569, 636
CviKI_1	RGCY	6 cut(s)	244, 356, 438, 470, 569, 636
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	2 cut(s)	377, 485
DpnI	GATC	3 cut(s)	281, 459, 477
DpnII	GATC	3 cut(s)	279, 457, 475
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	292
Eco88I	CYCGRG	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRI	GAATTC	1 cut(s)	211
EcoRII	CCWGG	3 cut(s)	60, 194, 295
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	3 cut(s)	124, 193, 318
FaiI	YATR	5 cut(s)	72, 122, 191, 316, 444
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	3 cut(s)	120, 189, 314
FauI	CCCGC	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	71
Fnu4HI	GCNGC	9 cut(s)	312, 357, 382, 402, 405, 439, 495, 498, 501
FokI	GGATG	3 cut(s)	351, 539, 598
Fsp4HI	GCNGC	9 cut(s)	312, 357, 382, 402, 405, 439, 495, 498, 501
FspBI	CTAG	2 cut(s)	228, 329
GlaI	GCGC	2 cut(s)	54, 514
GluI	GCNGC	9 cut(s)	312, 357, 382, 402, 405, 439, 495, 498, 501
GsuI	CTGGAG	1 cut(s)	522
HaeII	RGCGCY	1 cut(s)	56
HaeIII	GGCC	2 cut(s)	569, 636
HapII	CCGG	1 cut(s)	283
HhaI	GCGC	2 cut(s)	55, 515
Hin1II	CATG	3 cut(s)	124, 193, 318
Hin6I	GCGC	2 cut(s)	53, 513
HinP1I	GCGC	2 cut(s)	53, 513
HinfI	GANTC	1 cut(s)	157
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	3 cut(s)	72, 389, 628
Hpy188I	TCNGA	3 cut(s)	35, 279, 422
Hpy188III	TCNNGA	4 cut(s)	78, 161, 283, 329
Hpy8I	GTNNAC	3 cut(s)	72, 389, 628
HpyAV	CCTTC	5 cut(s)	118, 422, 489, 543, 575
HpyCH4III	ACNGT	2 cut(s)	48, 94
HpyCH4V	TGCA	2 cut(s)	88, 508
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	2 cut(s)	377, 485
Hsp92II	CATG	3 cut(s)	124, 193, 318
HspAI	GCGC	2 cut(s)	53, 513
KflI	GGGWCCC	1 cut(s)	292
Kpn2I	TCCGGA	1 cut(s)	282
Kzo9I	GATC	3 cut(s)	279, 457, 475
LmnI	GCTCC	3 cut(s)	122, 535, 554
Lsp1109I	GCAGC	2 cut(s)	343, 425
LweI	GCATC	2 cut(s)	74, 517
MaeI	CTAG	2 cut(s)	228, 329
MalI	GATC	3 cut(s)	281, 459, 477
MbiI	CCGCTC	2 cut(s)	83, 494
MboI	GATC	3 cut(s)	279, 457, 475
MboII	GAAGA	6 cut(s)	14, 17, 90, 98, 126, 132
MfeI	CAATTG	1 cut(s)	392
MflI	RGATCY	2 cut(s)	279, 475
MhlI	GDGCHC	1 cut(s)	614
MluCI	AATT	3 cut(s)	211, 392, 423
MmeI	TCCRAC	3 cut(s)	257, 316, 628
MnlI	CCTC	7 cut(s)	85, 183, 226, 259, 339, 460, 559
MroI	TCCGGA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	508
MspA1I	CMGCKG	1 cut(s)	381
MspI	CCGG	1 cut(s)	283
MspR9I	CCNGG	3 cut(s)	62, 196, 297
MunI	CAATTG	1 cut(s)	392
MvaI	CCWGG	3 cut(s)	62, 196, 297
MvnI	CGCG	1 cut(s)	515
MwoI	GCNNNNNNNGC	1 cut(s)	500
NdeII	GATC	3 cut(s)	279, 457, 475
NlaIII	CATG	3 cut(s)	124, 193, 318
NlaIV	GGNNCC	6 cut(s)	281, 293, 294, 477, 592, 611
PaeR7I	CTCGAG	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	157
PflMI	CCANNNNNTGG	1 cut(s)	195
PkrI	GCNGC	9 cut(s)	313, 358, 383, 403, 406, 440, 496, 499, 502
PpuMI	RGGWCCY	1 cut(s)	292
Psp5II	RGGWCCY	1 cut(s)	292
Psp6I	CCWGG	3 cut(s)	60, 194, 295
PspGI	CCWGG	3 cut(s)	60, 194, 295
PspN4I	GGNNCC	6 cut(s)	281, 293, 294, 477, 592, 611
PspPI	GGNCC	2 cut(s)	292, 634
PspPPI	RGGWCCY	1 cut(s)	292
PsuI	RGATCY	2 cut(s)	279, 475
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
RseI	CAYNNNNRTG	1 cut(s)	508
SatI	GCNGC	9 cut(s)	312, 357, 382, 402, 405, 439, 495, 498, 501
Sau3AI	GATC	3 cut(s)	279, 457, 475
Sau96I	GGNCC	2 cut(s)	292, 634
ScrFI	CCNGG	3 cut(s)	62, 196, 297
SduI	GDGCHC	1 cut(s)	614
SetI	ASST	7 cut(s)	77, 197, 270, 301, 350, 440, 624
SfaNI	GCATC	2 cut(s)	74, 517
Sfr274I	CTCGAG	1 cut(s)	76
SinI	GGWCC	1 cut(s)	292
SlaI	CTCGAG	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	508
SmlI	CTYRAG	2 cut(s)	76, 180
SmoI	CTYRAG	2 cut(s)	76, 180
SpeI	ACTAGT	1 cut(s)	227
Sse9I	AATT	3 cut(s)	211, 392, 423
SspMI	CTAG	2 cut(s)	228, 329
StyD4I	CCNGG	3 cut(s)	60, 194, 295
TaaI	ACNGT	2 cut(s)	48, 94
TaqI	TCGA	4 cut(s)	77, 252, 367, 456
TaqII	GACCGA	1 cut(s)	205
TasI	AATT	3 cut(s)	211, 392, 423
TauI	GCSGC	7 cut(s)	314, 384, 404, 407, 497, 500, 503
TfiI	GAWTC	1 cut(s)	157
TscAI	CASTG	2 cut(s)	51, 510
TseI	GCWGC	2 cut(s)	356, 438
TspDTI	ATGAA	2 cut(s)	17, 137
TspGWI	ACGGA	1 cut(s)	99
TspRI	CASTG	2 cut(s)	51, 510
Van91I	CCANNNNNTGG	1 cut(s)	195
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	1 cut(s)	211
XbaI	TCTAGA	1 cut(s)	328
XhoI	CTCGAG	1 cut(s)	76
XmiI	GTMKAC	1 cut(s)	71
XspI	CTAG	2 cut(s)	228, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.