Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0012688

Physical Location & Seq

Genomic Coordinates Reverse (-)

670588 .. 670914

Gene Structure 327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG010400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCTTCTCTGCAAAAACCCCAACCACCCGAGAACTATAACAATCAAAACCCATTATGGATGCGCTTCTTCTTTTCTTTCTGCTGCTTTGCGGCGCACCCTTCTTTCCCTGCTCGCCCAGCGCAACCCCGAAAGCCCATCCAAGATCCACGCCCTCCTTCAGGCTCAACCTCCAGGATCCGATTGGCGCATGGAACTGCTGGGATTTCTCCACGCCCTCCGCTCCCTGCGACTGGCGCTGCGTCTTTTGCGACGATACTACTCGGGTCTCCGAGCTCCGCTTGCCTCGCCTCCAACTCGGCGGCCGACTCAGTGATTCGCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

11.49

Weight (kDa)

10.79

Isoelectric Point (pI)

65.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012688)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476931 RchiOBHm_Chr4g0392271 RchiOBHm_Chr7g0187431
rosa_laevigata	RLG00000003932 RLG00000007563 RLG00000008341 RLG00000017893 RLG00000020729 RLG00000021147 RLG00000025201
rosa_multiflora	Rmu_co8156428.1_g000001 Rmu_sc0010379.1_g000011 Rmu_ssc0000312.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408140 Rroxscaffold_6G00420820
rosa_samantha	Rh1CG258700 Rh2BG566100 Rh6CG176000 Rh7BG010400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	223
AciI	CCGC	4 cut(s)	92, 221, 279, 302
AclWI	GGATC	3 cut(s)	140, 172, 185
AcoI	YGGCCR	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	144
AfiI	CCNNNNNNNGG	2 cut(s)	161, 233
AjnI	CCWGG	1 cut(s)	173
AluBI	AGCT	1 cut(s)	276
AluI	AGCT	1 cut(s)	276
Alw21I	GWGCWC	1 cut(s)	278
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	3 cut(s)	140, 172, 185
Ama87I	CYCGRG	2 cut(s)	29, 263
AoxI	GGCC	1 cut(s)	303
ApeKI	GCWGC	2 cut(s)	84, 239
AspLEI	GCGC	5 cut(s)	66, 97, 124, 190, 239
AvaI	CYCGRG	2 cut(s)	29, 263
BamHI	GGATCC	1 cut(s)	177
BanII	GRGCYC	1 cut(s)	278
BauI	CACGAG	1 cut(s)	322
Bbv12I	GWGCWC	1 cut(s)	278
BbvI	GCAGC	2 cut(s)	71, 226
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	273
BfoI	RGCGCY	1 cut(s)	240
BisI	GCNGC	4 cut(s)	85, 93, 240, 303
BlsI	GCNGC	4 cut(s)	86, 94, 241, 304
Bme1390I	CCNGG	1 cut(s)	175
BmeT110I	CYCGRG	2 cut(s)	29, 263
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	175
BmsI	GCATC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 233
Bse1I	ACTGG	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	175
BseGI	GGATG	2 cut(s)	66, 138
BseLI	CCNNNNNNNGG	2 cut(s)	161, 233
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	238
BseX3I	CGGCCG	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	71, 226
BseYI	CCCAGC	2 cut(s)	118, 200
Bsh1285I	CGRYCG	1 cut(s)	306
BshFI	GGCC	1 cut(s)	305
BsiEI	CGRYCG	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	278
BsiHKCI	CYCGRG	2 cut(s)	29, 263
BslI	CCNNNNNNNGG	2 cut(s)	161, 233
BsmAI	GTCTC	1 cut(s)	273
BsnI	GGCC	1 cut(s)	305
Bso31I	GGTCTC	1 cut(s)	273
BsoBI	CYCGRG	2 cut(s)	29, 263
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	2 cut(s)	145, 177
BspACI	CCGC	4 cut(s)	92, 221, 279, 302
BspANI	GGCC	1 cut(s)	305
BspCNI	CTCAG	1 cut(s)	323
BspLI	GGNNCC	1 cut(s)	179
BspPI	GGATC	3 cut(s)	140, 172, 185
BspTNI	GGTCTC	1 cut(s)	273
BsrBI	CCGCTC	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	238
BssMI	GATC	2 cut(s)	145, 177
BssSI	CACGAG	1 cut(s)	322
Bst2BI	CACGAG	1 cut(s)	322
Bst2UI	CCWGG	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	115, 283
BstDEI	CTNAG	1 cut(s)	310
BstENI	CCTNNNNNAGG	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	66, 138
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	5 cut(s)	66, 97, 124, 190, 239
BstKTI	GATC	2 cut(s)	148, 180
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	2 cut(s)	145, 177
BstMCI	CGRYCG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 236, 248, 282, 287
BstNI	CCWGG	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	71, 226
BstX2I	RGATCY	2 cut(s)	145, 177
BstYI	RGATCY	2 cut(s)	145, 177
BstZI	CGGCCG	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	305
BtsCI	GGATG	2 cut(s)	66, 138
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	2 cut(s)	115, 283
CfoI	GCGC	5 cut(s)	66, 97, 124, 190, 239
CseI	GACGC	1 cut(s)	231
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	5 cut(s)	5, 136, 165, 276, 305
CviKI_1	RGCY	5 cut(s)	5, 136, 165, 276, 305
DdeI	CTNAG	1 cut(s)	310
DpnI	GATC	2 cut(s)	147, 179
DpnII	GATC	2 cut(s)	145, 177
EaeI	YGGCCR	1 cut(s)	303
EagI	CGGCCG	1 cut(s)	303
Ecl136II	GAGCTC	1 cut(s)	276
EclXI	CGGCCG	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	278
Eco31I	GGTCTC	1 cut(s)	273
Eco52I	CGGCCG	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	276
Eco57I	CTGAAG	1 cut(s)	144
Eco88I	CYCGRG	2 cut(s)	29, 263
EcoICRI	GAGCTC	1 cut(s)	276
EcoNI	CCTNNNNNAGG	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	278
FaeI	CATG	1 cut(s)	194
FaiI	YATR	3 cut(s)	39, 58, 192
FatI	CATG	1 cut(s)	190
Fnu4HI	GCNGC	4 cut(s)	85, 93, 240, 303
FokI	GGATG	2 cut(s)	73, 125
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	4 cut(s)	85, 93, 240, 303
GlaI	GCGC	5 cut(s)	65, 96, 123, 189, 238
GluI	GCNGC	4 cut(s)	85, 93, 240, 303
GsaI	CCCAGC	2 cut(s)	122, 204
GsuI	CTGGAG	1 cut(s)	157
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	305
HgaI	GACGC	1 cut(s)	231
HhaI	GCGC	5 cut(s)	66, 97, 124, 190, 239
Hin1II	CATG	1 cut(s)	194
Hin6I	GCGC	5 cut(s)	64, 95, 122, 188, 237
HinP1I	GCGC	5 cut(s)	64, 95, 122, 188, 237
HinfI	GANTC	2 cut(s)	308, 316
Hpy188I	TCNGA	2 cut(s)	182, 273
Hpy188III	TCNNGA	1 cut(s)	324
Hpy99I	CGWCG	1 cut(s)	256
HpyAV	CCTTC	2 cut(s)	111, 168
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 236, 248, 282, 287
HpyF3I	CTNAG	1 cut(s)	310
Hsp92II	CATG	1 cut(s)	194
HspAI	GCGC	5 cut(s)	64, 95, 122, 188, 237
Kzo9I	GATC	2 cut(s)	145, 177
LmnI	GCTCC	2 cut(s)	228, 281
LpnPI	CCDG	8 cut(s)	123, 132, 147, 160, 186, 187, 219, 240
Lsp1109I	GCAGC	2 cut(s)	71, 226
LweI	GCATC	1 cut(s)	51
MalI	GATC	2 cut(s)	147, 179
MbiI	CCGCTC	1 cut(s)	223
MboI	GATC	2 cut(s)	145, 177
MboII	GAAGA	1 cut(s)	61
MflI	RGATCY	2 cut(s)	145, 177
MhlI	GDGCHC	1 cut(s)	278
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	5 cut(s)	165, 181, 228, 296, 301
MspR9I	CCNGG	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	175
MwoI	GCNNNNNNNGC	5 cut(s)	119, 236, 248, 282, 287
NdeII	GATC	2 cut(s)	145, 177
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	1 cut(s)	179
NmeAIII	GCCGAG	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	316
PfoI	TCCNGGA	1 cut(s)	173
PkrI	GCNGC	4 cut(s)	86, 94, 241, 304
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
Psp124BI	GAGCTC	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	173
PspFI	CCCAGC	2 cut(s)	118, 200
PspGI	CCWGG	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	179
PsuI	RGATCY	2 cut(s)	145, 177
SacI	GAGCTC	1 cut(s)	278
SatI	GCNGC	4 cut(s)	85, 93, 240, 303
Sau3AI	GATC	2 cut(s)	145, 177
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	2 cut(s)	173, 278
SfaNI	GCATC	1 cut(s)	51
SsiI	CCGC	4 cut(s)	92, 221, 279, 302
SstI	GAGCTC	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	173
TauI	GCSGC	2 cut(s)	95, 305
TfiI	GAWTC	1 cut(s)	316
TscAI	CASTG	1 cut(s)	318
TseI	GCWGC	2 cut(s)	84, 239
TspRI	CASTG	1 cut(s)	318
XagI	CCTNNNNNAGG	1 cut(s)	159
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.