Rroxscaffold_6G00420820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0012688
Physical Location & Seq
Forward (+)
42021257 .. 42031276
10020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00420820.1

Sequence Viewer

Length: 396 bp
ATGAACATGCGTCTATGGTATTTGTTTGTCAACATTAGTAATGAGAATTTTTTAGGTACTCACTTGGCTGACTTGCTTGCTAGCAAGTGCCGCACGGTCCTCTTTGCGCATCTCAAAGTTCCTAGGCATGTCGGATTTAAGAAAAATCTTCGCTTTGCCGGCCGCTTCACCACGGGAGCCTCGATTTGGTGCTTCGCCGGCCGCTTCGCTACCGGAGCCTTGATTTGGTGCTTCGCTTGTCGCTTCGCCGCTTCGCTTGTCGCTTCGCCGCTTCGCTTCGCCGGCTACTTCATCACGGGAGCCTCGATTTGTTGCTTCGCCGCTCGCTTTGCCGATGGGAGACTCAGTGCAAGAGTGGAGTATGACTTGAGTGACGATTTCAATTTGCTCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.73

Weight (kDa)

9.81

Isoelectric Point (pI)

17.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 108
AccBSI CCGCTC 1 cut(s) 323
AciI CCGC 6 cut(s) 91, 163, 202, 249, 269, 321
AcoI YGGCCR 2 cut(s) 160, 199
AcsI RAATTY 1 cut(s) 46
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 2 cut(s) 186, 225
AgsI TTSAA 1 cut(s) 382
Alw26I GTCTC 1 cut(s) 334
AoxI GGCC 2 cut(s) 160, 199
ApoI RAATTY 1 cut(s) 46
AspA2I CCTAGG 1 cut(s) 122
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 160
AsuNHI GCTAGC 1 cut(s) 80
AvaII GGWCC 1 cut(s) 97
AvrII CCTAGG 1 cut(s) 122
BccI CCATC 1 cut(s) 329
BcoDI GTCTC 1 cut(s) 334
BfaI CTAG 2 cut(s) 81, 123
BisI GCNGC 6 cut(s) 91, 163, 202, 249, 269, 321
BlnI CCTAGG 1 cut(s) 122
BlsI GCNGC 6 cut(s) 92, 164, 203, 250, 270, 322
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 3 cut(s) 178, 217, 301
BmsI GCATC 1 cut(s) 118
BmtI GCTAGC 1 cut(s) 84
Bpu10I CCTNAGC 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 388
BsaJI CCNNGG 2 cut(s) 122, 171
BsaWI WCCGGW 1 cut(s) 212
BsaXI ACNNNNNCTCC 2 cut(s) 331, 361
Bsc4I CCNNNNNNNGG 2 cut(s) 186, 225
Bse118I RCCGGY 3 cut(s) 158, 197, 281
BseDI CCNNGG 2 cut(s) 122, 171
BseLI CCNNNNNNNGG 2 cut(s) 186, 225
BseMII CTCAG 1 cut(s) 358
BseX3I CGGCCG 2 cut(s) 160, 199
Bsh1285I CGRYCG 2 cut(s) 163, 202
BshFI GGCC 2 cut(s) 162, 201
BsiEI CGRYCG 2 cut(s) 163, 202
BsiSI CCGG 4 cut(s) 159, 198, 213, 282
BslI CCNNNNNNNGG 2 cut(s) 186, 225
BsmAI GTCTC 1 cut(s) 334
BsnI GGCC 2 cut(s) 162, 201
BspACI CCGC 6 cut(s) 91, 163, 202, 249, 269, 321
BspANI GGCC 2 cut(s) 162, 201
BspCNI CTCAG 1 cut(s) 357
BspLI GGNNCC 3 cut(s) 178, 217, 301
BspOI GCTAGC 1 cut(s) 84
BsrBI CCGCTC 1 cut(s) 323
BsrFI RCCGGY 3 cut(s) 158, 197, 281
BssAI RCCGGY 3 cut(s) 158, 197, 281
BssECI CCNNGG 2 cut(s) 122, 171
BssT1I CCWWGG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 97
BstC8I GCNNGC 6 cut(s) 78, 82, 160, 199, 283, 325
BstDEI CTNAG 2 cut(s) 344, 389
BstDSI CCRYGG 1 cut(s) 171
BstHHI GCGC 1 cut(s) 109
BstMAI GTCTC 1 cut(s) 334
BstMCI CGRYCG 2 cut(s) 163, 202
BstMWI GCNNNNNNNGC 6 cut(s) 90, 159, 198, 215, 282, 329
BstNSI RCATGY 2 cut(s) 10, 131
BstZI CGGCCG 2 cut(s) 160, 199
BsuRI GGCC 2 cut(s) 162, 201
BtgI CCRYGG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 352
Cac8I GCNNGC 6 cut(s) 78, 82, 160, 199, 283, 325
CfoI GCGC 1 cut(s) 109
Cfr10I RCCGGY 3 cut(s) 158, 197, 281
Cfr13I GGNCC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 57
CviAII CATG 2 cut(s) 7, 128
CviJI RGCY 7 cut(s) 68, 162, 179, 201, 218, 285, 302
CviKI_1 RGCY 7 cut(s) 68, 162, 179, 201, 218, 285, 302
CviQI GTAC 1 cut(s) 57
DdeI CTNAG 2 cut(s) 344, 389
EaeI YGGCCR 2 cut(s) 160, 199
EagI CGGCCG 2 cut(s) 160, 199
EclXI CGGCCG 2 cut(s) 160, 199
Eco130I CCWWGG 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 97
Eco52I CGGCCG 2 cut(s) 160, 199
EcoT14I CCWWGG 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 122
FaeI CATG 2 cut(s) 10, 131
FaiI YATR 4 cut(s) 8, 16, 129, 363
FatI CATG 2 cut(s) 6, 127
Fnu4HI GCNGC 6 cut(s) 91, 163, 202, 249, 269, 321
Fsp4HI GCNGC 6 cut(s) 91, 163, 202, 249, 269, 321
FspBI CTAG 2 cut(s) 81, 123
FspI TGCGCA 1 cut(s) 108
GlaI GCGC 1 cut(s) 108
GluI GCNGC 6 cut(s) 91, 163, 202, 249, 269, 321
HaeIII GGCC 2 cut(s) 162, 201
HapII CCGG 4 cut(s) 159, 198, 213, 282
HhaI GCGC 1 cut(s) 109
Hin1II CATG 2 cut(s) 10, 131
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 1 cut(s) 342
HpaII CCGG 4 cut(s) 159, 198, 213, 282
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 1 cut(s) 134
Hpy8I GTNNAC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 350
HpyF10VI GCNNNNNNNGC 6 cut(s) 90, 159, 198, 215, 282, 329
HpyF3I CTNAG 2 cut(s) 344, 389
Hsp92II CATG 2 cut(s) 10, 131
HspAI GCGC 1 cut(s) 107
KroI GCCGGC 3 cut(s) 158, 197, 281
KroNI GCCGGC 3 cut(s) 160, 199, 283
LmnI GCTCC 3 cut(s) 176, 215, 299
LpnPI CCDG 5 cut(s) 172, 211, 226, 295, 376
LweI GCATC 1 cut(s) 118
MaeI CTAG 2 cut(s) 81, 123
MaeIII GTNAC 1 cut(s) 371
MbiI CCGCTC 1 cut(s) 323
MboII GAAGA 1 cut(s) 140
MluCI AATT 2 cut(s) 46, 382
MlyI GAGTC 1 cut(s) 336
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 3 cut(s) 110, 190, 313
MroNI GCCGGC 3 cut(s) 158, 197, 281
MseI TTAA 1 cut(s) 138
MspI CCGG 4 cut(s) 159, 198, 213, 282
MwoI GCNNNNNNNGC 6 cut(s) 90, 159, 198, 215, 282, 329
NaeI GCCGGC 3 cut(s) 160, 199, 283
NgoMIV GCCGGC 3 cut(s) 158, 197, 281
NheI GCTAGC 1 cut(s) 80
NlaIII CATG 2 cut(s) 10, 131
NlaIV GGNNCC 3 cut(s) 178, 217, 301
NmuCI GTSAC 1 cut(s) 371
NsbI TGCGCA 1 cut(s) 108
NspI RCATGY 2 cut(s) 10, 131
PcsI WCGNNNNNNNCGW 2 cut(s) 179, 302
PdiI GCCGGC 3 cut(s) 160, 199, 283
PkrI GCNGC 6 cut(s) 92, 164, 203, 250, 270, 322
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
PspN4I GGNNCC 3 cut(s) 178, 217, 301
PspPI GGNCC 1 cut(s) 97
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 6 cut(s) 91, 163, 202, 249, 269, 321
Sau96I GGNCC 1 cut(s) 97
SchI GAGTC 1 cut(s) 336
SetI ASST 2 cut(s) 58, 395
SfaNI GCATC 1 cut(s) 118
SinI GGWCC 1 cut(s) 97
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
Sse9I AATT 2 cut(s) 46, 382
SsiI CCGC 6 cut(s) 91, 163, 202, 249, 269, 321
SspMI CTAG 2 cut(s) 81, 123
StyI CCWWGG 1 cut(s) 122
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 2 cut(s) 182, 305
TasI AATT 2 cut(s) 46, 382
TauI GCSGC 6 cut(s) 93, 165, 204, 251, 271, 323
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 1 cut(s) 352
TseFI GTSAC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 2 cut(s) 17, 280
TspRI CASTG 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 1 cut(s) 46
XceI RCATGY 2 cut(s) 10, 131
XmaJI CCTAGG 1 cut(s) 122
XspI CTAG 2 cut(s) 81, 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.