Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012688

Physical Location & Seq

Genomic Coordinates Reverse (-)

52348257 .. 52348505

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG258700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGATGTGCTTCTTTTTTTCTTTATGCTGCTTTGCGGCGCACCCTTCTTTCCCTGCCCGCCCAGTGCAACCCCGAAAGCCCATCCAAGATCCACGCCCTCCTTCACGCTCAACCTCCAGGATCCGATTGGCGCATGGAACTACTGGGATTTCTCCACGCCCTCCGCTCCCTGCGACTGGTGCTGCGTCTTTTGCTACGATACTACTCGGGTCTCCGAGTTCCGCTTGCCTGGGCGGCCGACTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048731 GO:0048856 GO:0071944 GO:0090696 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

82

Amino Acids

9.31

Weight (kDa)

5.48

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012688)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476931 RchiOBHm_Chr4g0392271 RchiOBHm_Chr7g0187431
rosa_laevigata	RLG00000003932 RLG00000007563 RLG00000008341 RLG00000017893 RLG00000020729 RLG00000021147 RLG00000025201
rosa_multiflora	Rmu_co8156428.1_g000001 Rmu_sc0010379.1_g000011 Rmu_ssc0000312.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408140 Rroxscaffold_6G00420820
rosa_samantha	Rh1CG258700 Rh2BG566100 Rh6CG176000 Rh7BG010400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	167
AciI	CCGC	5 cut(s)	36, 59, 165, 223, 235
AclWI	GGATC	3 cut(s)	84, 116, 129
AcoI	YGGCCR	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	177
AjnI	CCWGG	2 cut(s)	117, 229
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	3 cut(s)	84, 116, 129
Ama87I	CYCGRG	1 cut(s)	207
AoxI	GGCC	1 cut(s)	236
ApeKI	GCWGC	2 cut(s)	28, 183
AspLEI	GCGC	2 cut(s)	41, 134
AvaI	CYCGRG	1 cut(s)	207
BamHI	GGATCC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	15, 170
BccI	CCATC	1 cut(s)	90
BciT130I	CCWGG	2 cut(s)	119, 231
BcoDI	GTCTC	1 cut(s)	217
BglI	GCCNNNNNGGC	1 cut(s)	235
BisI	GCNGC	4 cut(s)	29, 37, 184, 236
BlsI	GCNGC	4 cut(s)	30, 38, 185, 237
Bme1390I	CCNGG	2 cut(s)	119, 231
BmeT110I	CYCGRG	1 cut(s)	207
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	2 cut(s)	119, 231
BmrI	ACTGGG	2 cut(s)	57, 154
BmuI	ACTGGG	2 cut(s)	57, 154
BpmI	CTGGAG	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	177
Bse1I	ACTGG	3 cut(s)	63, 149, 182
BseBI	CCWGG	2 cut(s)	119, 231
BseDI	CCNNGG	1 cut(s)	230
BseGI	GGATG	2 cut(s)	10, 82
BseLI	CCNNNNNNNGG	1 cut(s)	177
BseNI	ACTGG	3 cut(s)	63, 149, 182
BseX3I	CGGCCG	1 cut(s)	236
BseXI	GCAGC	2 cut(s)	15, 170
Bsh1285I	CGRYCG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	238
BsiEI	CGRYCG	1 cut(s)	239
BsiHKCI	CYCGRG	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	177
BsmAI	GTCTC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	238
Bso31I	GGTCTC	1 cut(s)	217
BsoBI	CYCGRG	1 cut(s)	207
Bsp143I	GATC	2 cut(s)	89, 121
BspACI	CCGC	5 cut(s)	36, 59, 165, 223, 235
BspANI	GGCC	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	123
BspPI	GGATC	3 cut(s)	84, 116, 129
BspTNI	GGTCTC	1 cut(s)	217
BsrBI	CCGCTC	1 cut(s)	167
BsrI	ACTGG	3 cut(s)	63, 149, 182
BssECI	CCNNGG	1 cut(s)	230
BssMI	GATC	2 cut(s)	89, 121
Bst2UI	CCWGG	2 cut(s)	119, 231
BstC8I	GCNNGC	2 cut(s)	59, 227
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	2 cut(s)	10, 82
BstHHI	GCGC	2 cut(s)	41, 134
BstKTI	GATC	2 cut(s)	92, 124
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	2 cut(s)	89, 121
BstMCI	CGRYCG	1 cut(s)	239
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 192, 235
BstNI	CCWGG	2 cut(s)	119, 231
BstSCI	CCNGG	2 cut(s)	117, 229
BstV1I	GCAGC	2 cut(s)	15, 170
BstX2I	RGATCY	2 cut(s)	89, 121
BstYI	RGATCY	2 cut(s)	89, 121
BstZI	CGGCCG	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	238
BtsCI	GGATG	2 cut(s)	10, 82
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	2 cut(s)	59, 227
CfoI	GCGC	2 cut(s)	41, 134
CseI	GACGC	1 cut(s)	175
CviAII	CATG	1 cut(s)	135
CviJI	RGCY	2 cut(s)	80, 238
CviKI_1	RGCY	2 cut(s)	80, 238
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	2 cut(s)	91, 123
DpnII	GATC	2 cut(s)	89, 121
EaeI	YGGCCR	1 cut(s)	236
EagI	CGGCCG	1 cut(s)	236
EclXI	CGGCCG	1 cut(s)	236
Eco31I	GGTCTC	1 cut(s)	217
Eco52I	CGGCCG	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	207
EcoRII	CCWGG	2 cut(s)	117, 229
FaeI	CATG	1 cut(s)	138
FaiI	YATR	2 cut(s)	26, 136
FatI	CATG	1 cut(s)	134
FauI	CCCGC	1 cut(s)	66
Fnu4HI	GCNGC	4 cut(s)	29, 37, 184, 236
FokI	GGATG	2 cut(s)	17, 69
Fsp4HI	GCNGC	4 cut(s)	29, 37, 184, 236
GlaI	GCGC	2 cut(s)	40, 133
GluI	GCNGC	4 cut(s)	29, 37, 184, 236
GsuI	CTGGAG	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	238
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	2 cut(s)	41, 134
Hin1II	CATG	1 cut(s)	138
Hin6I	GCGC	2 cut(s)	39, 132
HinP1I	GCGC	2 cut(s)	39, 132
HinfI	GANTC	1 cut(s)	241
Hpy188I	TCNGA	2 cut(s)	126, 217
HpyAV	CCTTC	2 cut(s)	55, 112
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 192, 235
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	1 cut(s)	138
HspAI	GCGC	2 cut(s)	39, 132
Kzo9I	GATC	2 cut(s)	89, 121
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	9 cut(s)	67, 76, 104, 130, 131, 163, 184, 216, 243
Lsp1109I	GCAGC	2 cut(s)	15, 170
MalI	GATC	2 cut(s)	91, 123
MbiI	CCGCTC	1 cut(s)	167
MboI	GATC	2 cut(s)	89, 121
MflI	RGATCY	2 cut(s)	89, 121
MlyI	GAGTC	1 cut(s)	235
MnlI	CCTC	3 cut(s)	109, 125, 172
MspR9I	CCNGG	2 cut(s)	119, 231
MvaI	CCWGG	2 cut(s)	119, 231
MwoI	GCNNNNNNNGC	3 cut(s)	180, 192, 235
NdeII	GATC	2 cut(s)	89, 121
NlaIII	CATG	1 cut(s)	138
NlaIV	GGNNCC	1 cut(s)	123
PfoI	TCCNGGA	1 cut(s)	117
PkrI	GCNGC	4 cut(s)	30, 38, 185, 237
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
Psp6I	CCWGG	2 cut(s)	117, 229
PspGI	CCWGG	2 cut(s)	117, 229
PspN4I	GGNNCC	1 cut(s)	123
PsuI	RGATCY	2 cut(s)	89, 121
SatI	GCNGC	4 cut(s)	29, 37, 184, 236
Sau3AI	GATC	2 cut(s)	89, 121
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	2 cut(s)	119, 231
SetI	ASST	1 cut(s)	117
SsiI	CCGC	5 cut(s)	36, 59, 165, 223, 235
StyD4I	CCNGG	2 cut(s)	117, 229
TauI	GCSGC	2 cut(s)	39, 238
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	2 cut(s)	28, 183
TspRI	CASTG	1 cut(s)	70
XcmI	CCANNNNNNNNNTGG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.