Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000312.1

Orthogroup ID

OG0012688

Physical Location & Seq

Genomic Coordinates Forward (+)

30113 .. 32781

Gene Structure 2669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000312.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atgcaaggtactcacttggctgacttgcttgctagcaagtgccgcacggtccgctttgcgtattgcaaagttcggcccgtgacactttgcatgcgcaaccccaaaagcctagccaagatcgacgccctcaccaccttcaggctcaacctccaggatccaattggcgcatggaactgctgggatttctccacaccctccgcttcctgcgattggcactgcgtcttttgcgataatactactcgggtctccgagctccgcttgcctcgcctccatctcggcggcaactcattgactagctcgcgaatctcaggatgctggggaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048731 GO:0048856 GO:0071944 GO:0090696 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

108

Amino Acids

12.08

Weight (kDa)

9.1

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012688)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0476931 RchiOBHm_Chr4g0392271 RchiOBHm_Chr7g0187431
rosa_laevigata	RLG00000003932 RLG00000007563 RLG00000008341 RLG00000017893 RLG00000020729 RLG00000021147 RLG00000025201
rosa_multiflora	Rmu_co8156428.1_g000001 Rmu_sc0010379.1_g000011 Rmu_ssc0000312.1_g000008
rosa_roxburghii	Rroxscaffold_6G00408140 Rroxscaffold_6G00420820
rosa_samantha	Rh1CG258700 Rh2BG566100 Rh6CG176000 Rh7BG010400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	95
AccII	CGCG	1 cut(s)	301
AciI	CCGC	5 cut(s)	43, 52, 198, 256, 279
AclWI	GGATC	2 cut(s)	149, 162
AcuI	CTGAAG	1 cut(s)	121
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	2 cut(s)	138, 210
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	3 cut(s)	253, 297, 324
AluI	AGCT	3 cut(s)	253, 297, 324
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	2 cut(s)	149, 162
Ama87I	CYCGRG	1 cut(s)	240
AoxI	GGCC	1 cut(s)	74
AspLEI	GCGC	2 cut(s)	96, 167
AspS9I	GGNCC	2 cut(s)	49, 75
AsuHPI	GGTGA	1 cut(s)	121
AsuNHI	GCTAGC	1 cut(s)	32
AvaI	CYCGRG	1 cut(s)	240
AvaII	GGWCC	1 cut(s)	49
BamHI	GGATCC	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	255
BccI	CCATC	1 cut(s)	279
BciT130I	CCWGG	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	3 cut(s)	33, 110, 294
BisI	GCNGC	2 cut(s)	43, 280
BlsI	GCNGC	2 cut(s)	44, 281
Bme1390I	CCNGG	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	240
BmgT120I	GGNCC	2 cut(s)	49, 75
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	302
BmtI	GCTAGC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 210
BseBI	CCWGG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	317
BseLI	CCNNNNNNNGG	2 cut(s)	138, 210
BseMII	CTCAG	1 cut(s)	321
BseYI	CCCAGC	2 cut(s)	177, 315
Bsh1236I	CGCG	1 cut(s)	301
BshFI	GGCC	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	240
BslI	CCNNNNNNNGG	2 cut(s)	138, 210
BsmAI	GTCTC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	76
Bso31I	GGTCTC	1 cut(s)	250
BsoBI	CYCGRG	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	2 cut(s)	117, 154
Bsp68I	TCGCGA	1 cut(s)	301
BspACI	CCGC	5 cut(s)	43, 52, 198, 256, 279
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	1 cut(s)	320
BspFNI	CGCG	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	156
BspOI	GCTAGC	1 cut(s)	36
BspPI	GGATC	2 cut(s)	149, 162
BspTNI	GGTCTC	1 cut(s)	250
BssMI	GATC	2 cut(s)	117, 154
BssNI	GRCGYC	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	49
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	5 cut(s)	30, 34, 92, 260, 299
BstDEI	CTNAG	1 cut(s)	307
BstF5I	GGATG	1 cut(s)	317
BstFNI	CGCG	1 cut(s)	301
BstHHI	GCGC	2 cut(s)	96, 167
BstKTI	GATC	2 cut(s)	120, 157
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	2 cut(s)	117, 154
BstMWI	GCNNNNNNNGC	6 cut(s)	42, 51, 225, 259, 264, 321
BstNI	CCWGG	1 cut(s)	152
BstNSI	RCATGY	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	150
BstUI	CGCG	1 cut(s)	301
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	317
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	214
BtuMI	TCGCGA	1 cut(s)	301
Cac8I	GCNNGC	5 cut(s)	30, 34, 92, 260, 299
CfoI	GCGC	2 cut(s)	96, 167
Cfr13I	GGNCC	2 cut(s)	49, 75
CpoI	CGGWCCG	1 cut(s)	49
CseI	GACGC	2 cut(s)	131, 208
Csp6I	GTAC	1 cut(s)	9
CspI	CGGWCCG	1 cut(s)	49
CviAII	CATG	2 cut(s)	91, 168
CviJI	RGCY	8 cut(s)	20, 76, 108, 113, 142, 253, 297, 324
CviKI_1	RGCY	8 cut(s)	20, 76, 108, 113, 142, 253, 297, 324
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	1 cut(s)	307
DpnI	GATC	2 cut(s)	119, 156
DpnII	GATC	2 cut(s)	117, 154
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	121
Eco88I	CYCGRG	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	255
FaeI	CATG	2 cut(s)	94, 171
FaiI	YATR	2 cut(s)	92, 169
FatI	CATG	2 cut(s)	90, 167
Fnu4HI	GCNGC	2 cut(s)	43, 280
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	2 cut(s)	43, 280
FspBI	CTAG	3 cut(s)	33, 110, 294
FspI	TGCGCA	1 cut(s)	95
GlaI	GCGC	2 cut(s)	95, 166
GluI	GCNGC	2 cut(s)	43, 280
GsaI	CCCAGC	2 cut(s)	181, 319
GsuI	CTGGAG	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	76
HgaI	GACGC	2 cut(s)	131, 208
HhaI	GCGC	2 cut(s)	96, 167
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	94, 171
Hin6I	GCGC	2 cut(s)	94, 165
HinP1I	GCGC	2 cut(s)	94, 165
HinfI	GANTC	1 cut(s)	303
HphI	GGTGA	1 cut(s)	121
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	2 cut(s)	300, 309
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	3 cut(s)	4, 66, 90
HpyF10VI	GCNNNNNNNGC	6 cut(s)	42, 51, 225, 259, 264, 321
HpyF3I	CTNAG	1 cut(s)	307
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	94, 171
HspAI	GCGC	2 cut(s)	94, 165
Kzo9I	GATC	2 cut(s)	117, 154
LmnI	GCTCC	1 cut(s)	258
LpnPI	CCDG	7 cut(s)	124, 137, 163, 164, 217, 294, 301
LweI	GCATC	1 cut(s)	302
MaeI	CTAG	3 cut(s)	33, 110, 294
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	2 cut(s)	119, 156
MboI	GATC	2 cut(s)	117, 154
MfeI	CAATTG	1 cut(s)	159
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	1 cut(s)	159
MnlI	CCTC	5 cut(s)	137, 158, 205, 273, 278
MspR9I	CCNGG	1 cut(s)	152
MunI	CAATTG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	152
MvnI	CGCG	1 cut(s)	301
MwoI	GCNNNNNNNGC	6 cut(s)	42, 51, 225, 259, 264, 321
NdeII	GATC	2 cut(s)	117, 154
NheI	GCTAGC	1 cut(s)	32
NlaIII	CATG	2 cut(s)	94, 171
NlaIV	GGNNCC	1 cut(s)	156
NmeAIII	GCCGAG	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	79
NruI	TCGCGA	1 cut(s)	301
NsbI	TGCGCA	1 cut(s)	95
NspI	RCATGY	1 cut(s)	94
PaeI	GCATGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	303
PfoI	TCCNGGA	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	44, 281
Psp124BI	GAGCTC	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	150
PspFI	CCCAGC	2 cut(s)	177, 315
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	49, 75
PsuI	RGATCY	1 cut(s)	154
RruI	TCGCGA	1 cut(s)	301
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
Rsr2I	CGGWCCG	1 cut(s)	49
RsrII	CGGWCCG	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	255
SatI	GCNGC	2 cut(s)	43, 280
Sau3AI	GATC	2 cut(s)	117, 154
Sau96I	GGNCC	2 cut(s)	49, 75
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	6 cut(s)	10, 137, 150, 255, 299, 326
SfaNI	GCATC	1 cut(s)	302
SinI	GGWCC	1 cut(s)	49
SphI	GCATGC	1 cut(s)	94
Sse9I	AATT	1 cut(s)	159
SsiI	CCGC	5 cut(s)	43, 52, 198, 256, 279
SspMI	CTAG	3 cut(s)	33, 110, 294
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	120
TasI	AATT	1 cut(s)	159
TauI	GCSGC	2 cut(s)	45, 282
TfiI	GAWTC	1 cut(s)	303
TscAI	CASTG	1 cut(s)	221
TseFI	GTSAC	1 cut(s)	79
Tsp45I	GTSAC	1 cut(s)	79
TspRI	CASTG	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	49
XceI	RCATGY	1 cut(s)	94
XcmI	CCANNNNNNNNNTGG	2 cut(s)	158, 165
XspI	CTAG	3 cut(s)	33, 110, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.