RLG00000008341

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012688
Physical Location & Seq
Forward (+)
29233575 .. 29234593
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008341

Sequence Viewer

Length: 462 bp
ATGAAGGCGTGGTCTTTGTCTTCTTTTGTGGCAGTGAATCGTGATTATCTCCCTCTCTCTCAAGTTACCATGACTTGGGAGTTGAATTCGGTCTGGCGAACTAGTAAGGGTAGTTGGCTACCTTTCGATGGAACAAGGGAGGTCTTGGGTCGGATTCGAATTTGGGATCCAGGTTCTTTGAAGGCGGCATGGAAATCCAATCTGGCAGTTGGATGGCGAAGGTCATTGGTTGCTAGTTTCAAACGGTCTCTTGGTGGCGGTGGCCAATTGTTGGTGACGGCGAGATTGGCTGTCAAAATTGAAGGGTTTGGCTGCTGTGGGTTTGCCATCGAGCTGTTAAAGGGAGTGTTTGATTCTCTTAGGCGAGCGGCGGCGACACTGCAAGTGGAGTCTCTCCAGCAAGGCAATGCTCGGGGTACTGGTGTCTGGTTTTGGTGTGCCGACGGCTGCAGGGCCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.84

Weight (kDa)

10.06

Isoelectric Point (pI)

44.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 75, 271
AccBSI CCGCTC 1 cut(s) 368
AciI CCGC 4 cut(s) 185, 258, 368, 371
AclWI GGATC 2 cut(s) 161, 174
AcoI YGGCCR 1 cut(s) 262
AcsI RAATTY 2 cut(s) 85, 159
AfaI GTAC 1 cut(s) 418
AfiI CCNNNNNNNGG 3 cut(s) 75, 128, 271
AgsI TTSAA 4 cut(s) 85, 181, 241, 302
AhlI ACTAGT 1 cut(s) 101
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 1 cut(s) 334
AluI AGCT 1 cut(s) 334
Alw26I GTCTC 2 cut(s) 252, 396
AlwI GGATC 2 cut(s) 161, 174
AlwNI CAGNNNCTG 1 cut(s) 456
Ama87I CYCGRG 1 cut(s) 411
AoxI GGCC 2 cut(s) 262, 453
ApeKI GCWGC 2 cut(s) 312, 447
ApoI RAATTY 2 cut(s) 85, 159
AspS9I GGNCC 1 cut(s) 453
AsuHPI GGTGA 1 cut(s) 286
AsuII TTCGAA 1 cut(s) 157
AvaI CYCGRG 1 cut(s) 411
BaeI ACNNNNGTAYC 2 cut(s) 408, 441
BalI TGGCCA 1 cut(s) 264
BamHI GGATCC 1 cut(s) 166
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 2 cut(s) 299, 434
BccI CCATC 3 cut(s) 122, 207, 335
BceAI ACGGC 2 cut(s) 294, 460
BciT130I CCWGG 1 cut(s) 171
BcoDI GTCTC 2 cut(s) 252, 396
BcuI ACTAGT 1 cut(s) 101
BfaI CTAG 2 cut(s) 102, 234
BfmI CTRYAG 1 cut(s) 448
BisI GCNGC 5 cut(s) 186, 313, 369, 372, 448
BlsI GCNGC 5 cut(s) 187, 314, 370, 373, 449
Bme1390I CCNGG 1 cut(s) 171
BmeT110I CYCGRG 1 cut(s) 411
BmgT120I GGNCC 1 cut(s) 453
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 380
Bpu14I TTCGAA 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 252
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 128, 271
Bse1I ACTGG 1 cut(s) 424
Bse3DI GCAATG 1 cut(s) 412
BseBI CCWGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 218
BseLI CCNNNNNNNGG 3 cut(s) 75, 128, 271
BseMI GCAATG 1 cut(s) 412
BseNI ACTGG 1 cut(s) 424
BseXI GCAGC 2 cut(s) 299, 434
BshFI GGCC 2 cut(s) 264, 455
BsiHKCI CYCGRG 1 cut(s) 411
BslI CCNNNNNNNGG 3 cut(s) 75, 128, 271
BsmAI GTCTC 2 cut(s) 252, 396
BsnI GGCC 2 cut(s) 264, 455
Bso31I GGTCTC 1 cut(s) 252
BsoBI CYCGRG 1 cut(s) 411
Bsp119I TTCGAA 1 cut(s) 157
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 4 cut(s) 185, 258, 368, 371
BspANI GGCC 2 cut(s) 264, 455
BspLI GGNNCC 1 cut(s) 168
BspMAI CTGCAG 1 cut(s) 452
BspPI GGATC 2 cut(s) 161, 174
BspT104I TTCGAA 1 cut(s) 157
BspTNI GGTCTC 1 cut(s) 252
BsrBI CCGCTC 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 412
BsrI ACTGG 1 cut(s) 424
BssMI GATC 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 246
BstBI TTCGAA 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 1 cut(s) 359
BstF5I GGATG 1 cut(s) 218
BstKTI GATC 1 cut(s) 169
BstMAI GTCTC 2 cut(s) 252, 396
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstSFI CTRYAG 1 cut(s) 448
BstV1I GCAGC 2 cut(s) 299, 434
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BsuRI GGCC 2 cut(s) 264, 455
BtsCI GGATG 1 cut(s) 218
BtsI GCAGTG 2 cut(s) 39, 377
BtsIMutI CAGTG 2 cut(s) 39, 377
Cac8I GCNNGC 1 cut(s) 366
CaiI CAGNNNCTG 1 cut(s) 456
Cfr13I GGNCC 1 cut(s) 453
Csp6I GTAC 1 cut(s) 417
CviAII CATG 2 cut(s) 70, 189
CviJI RGCY 7 cut(s) 118, 264, 290, 312, 334, 447, 455
CviKI_1 RGCY 7 cut(s) 118, 264, 290, 312, 334, 447, 455
CviQI GTAC 1 cut(s) 417
DdeI CTNAG 1 cut(s) 359
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 262
Eco31I GGTCTC 1 cut(s) 252
Eco88I CYCGRG 1 cut(s) 411
EcoO109I RGGNCCY 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 169
FaeI CATG 2 cut(s) 73, 192
FaiI YATR 2 cut(s) 71, 190
FatI CATG 2 cut(s) 69, 188
Fnu4HI GCNGC 5 cut(s) 186, 313, 369, 372, 448
FokI GGATG 1 cut(s) 225
Fsp4HI GCNGC 5 cut(s) 186, 313, 369, 372, 448
FspBI CTAG 2 cut(s) 102, 234
GluI GCNGC 5 cut(s) 186, 313, 369, 372, 448
GsuI CTGGAG 1 cut(s) 380
HaeIII GGCC 2 cut(s) 264, 455
Hin1II CATG 2 cut(s) 73, 192
HinfI GANTC 4 cut(s) 37, 154, 353, 389
HphI GGTGA 1 cut(s) 286
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 41
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 3 cut(s) 175, 213, 296
HpyCH4III ACNGT 1 cut(s) 246
HpyCH4V TGCA 2 cut(s) 382, 450
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 1 cut(s) 359
Hsp92II CATG 2 cut(s) 73, 192
Kzo9I GATC 1 cut(s) 166
LpnPI CCDG 8 cut(s) 79, 156, 183, 188, 405, 410, 412, 436
Lsp1109I GCAGC 2 cut(s) 299, 434
MaeI CTAG 2 cut(s) 102, 234
MaeIII GTNAC 2 cut(s) 64, 274
MalI GATC 1 cut(s) 168
MbiI CCGCTC 1 cut(s) 368
MboI GATC 1 cut(s) 166
MboII GAAGA 1 cut(s) 12
MfeI CAATTG 1 cut(s) 266
MflI RGATCY 1 cut(s) 166
MlsI TGGCCA 1 cut(s) 264
MluCI AATT 4 cut(s) 85, 159, 266, 297
MluNI TGGCCA 1 cut(s) 264
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 2 cut(s) 131, 190
MnlI CCTC 2 cut(s) 63, 133
Mox20I TGGCCA 1 cut(s) 264
MscI TGGCCA 1 cut(s) 264
MseI TTAA 2 cut(s) 338, 460
Msp20I TGGCCA 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 171
MunI CAATTG 1 cut(s) 266
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 287
NdeII GATC 1 cut(s) 166
NlaIII CATG 2 cut(s) 73, 192
NlaIV GGNNCC 1 cut(s) 168
NmuCI GTSAC 1 cut(s) 274
NspV TTCGAA 1 cut(s) 157
PfeI GAWTC 3 cut(s) 37, 154, 353
PflMI CCANNNNNTGG 2 cut(s) 75, 271
PkrI GCNGC 5 cut(s) 187, 314, 370, 373, 449
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 1 cut(s) 453
PstI CTGCAG 1 cut(s) 452
PstNI CAGNNNCTG 1 cut(s) 456
PsuI RGATCY 1 cut(s) 166
RsaI GTAC 1 cut(s) 418
RsaNI GTAC 1 cut(s) 417
SaqAI TTAA 2 cut(s) 338, 460
SatI GCNGC 5 cut(s) 186, 313, 369, 372, 448
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 1 cut(s) 453
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 1 cut(s) 171
SetI ASST 5 cut(s) 124, 144, 175, 224, 336
SfcI CTRYAG 1 cut(s) 448
SfuI TTCGAA 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
SpeI ACTAGT 1 cut(s) 101
Sse9I AATT 4 cut(s) 85, 159, 266, 297
SsiI CCGC 4 cut(s) 185, 258, 368, 371
SspMI CTAG 2 cut(s) 102, 234
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 1 cut(s) 246
TaqI TCGA 3 cut(s) 126, 157, 330
TaqII GACCGA 1 cut(s) 79
TasI AATT 4 cut(s) 85, 159, 266, 297
TauI GCSGC 3 cut(s) 188, 371, 374
TfiI GAWTC 3 cut(s) 37, 154, 353
Tru1I TTAA 2 cut(s) 338, 460
Tru9I TTAA 2 cut(s) 338, 460
TscAI CASTG 2 cut(s) 39, 384
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 2 cut(s) 312, 447
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 39, 384
Van91I CCANNNNNTGG 2 cut(s) 75, 271
XapI RAATTY 2 cut(s) 85, 159
XspI CTAG 2 cut(s) 102, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.