Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003964

Physical Location & Seq

Genomic Coordinates Forward (+)

46713006 .. 46717314

Gene Structure 4309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45847

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTTTTCAAAGTTGAAGCTATCTGCGTCTGGAGATAGTGGAGTACCTGAAGTGGTAGCTGATCCTCTAGGTGAAGTTTCGAGGACATTTCAGGAGCTTGGAATATGTGTTGTGCAACAATGTGCTAAGATTCGCCAACAAGTCTCAGCAGCAGTGACCTATGATAAATCTATCAAGGCAATAAGAGTGAGGGTACCAGATTCAGATGATGAATTTCTTCTCCATCCTGTAACTGTGAGACGGAATGACCGCTCTGCCCAAAGTGTGGATGAGCGGATAGGGGAGCAAAAATTGCAGTATAATGATGGTCCAGAAAATATTGAACCTGAAGAAATTCGGCCCATGGAAAATTATGCCATGTCAATAACATGGCCAGACGGATTTAGTCGGTTGGCGGTAGAGGCTCATAAAGGATATACCCAACAACAATTTGACGAGGTGTGCATTGAAGTGGCCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0051186 GO:0051536 GO:0051540 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF971 FeS_assembly_P ParA

Protein Analysis

153

Amino Acids

17.16

Weight (kDa)

4.74

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GBBH-like_N	PF06155	67 - 129	8.1e-07	Gamma-butyrobetaine hydroxylase-like, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003964)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0332011 RchiOBHm_Chr2g0090851 RchiOBHm_Chr2g0147101 RchiOBHm_Chr3g0496131
rosa_multiflora	Rmu_sc0002882.1_g000018 Rmu_sc0030390.1_g000001
rosa_samantha	Rh1DG125700 Rh2AG358500 Rh2AG463300 Rh2CG450100 Rh2DG320200 Rh3AG171400 Rh3AG326900 Rh3BG097800 Rh3BG144000 Rh3BG197000 Rh3CG145400 Rh3CG187900 Rh3DG145200 Rh4AG145300 Rh4AG256400 Rh4BG261800 Rh4DG132600 Rh5AG231200 Rh5AG444900 Rh5BG346900 Rh5CG263900 Rh5CG479600 Rh5DG360000 Rh6CG162300 Rh6DG153900 Rh7AG437000 Rh7BG440000
rosa_wichuraiana	Rw5G029020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	193
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccBSI	CCGCTC	2 cut(s)	252, 274
AciI	CCGC	3 cut(s)	250, 274, 395
AclWI	GGATC	1 cut(s)	56
AcoI	YGGCCR	2 cut(s)	371, 453
AcsI	RAATTY	2 cut(s)	212, 333
AcuI	CTGAAG	2 cut(s)	69, 348
AfaI	GTAC	2 cut(s)	45, 195
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	4 cut(s)	9, 16, 323, 449
AluBI	AGCT	3 cut(s)	19, 59, 97
AluI	AGCT	3 cut(s)	19, 59, 97
Alw26I	GTCTC	2 cut(s)	148, 232
AlwI	GGATC	1 cut(s)	56
AoxI	GGCC	3 cut(s)	338, 371, 453
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	2 cut(s)	212, 333
Asp700I	GAANNNNTTC	2 cut(s)	216, 333
Asp718I	GGTACC	1 cut(s)	193
AspS9I	GGNCC	2 cut(s)	308, 339
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	308
BalI	TGGCCA	1 cut(s)	373
BanI	GGYRCC	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	2 cut(s)	231, 299
BcoDI	GTCTC	2 cut(s)	148, 232
BfaI	CTAG	1 cut(s)	68
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	308, 339
BmiI	GGNNCC	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	2 cut(s)	223, 274
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	161
BshFI	GGCC	3 cut(s)	340, 373, 455
BshNI	GGYRCC	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	2 cut(s)	148, 232
BsmBI	CGTCTC	1 cut(s)	232
BsnI	GGCC	3 cut(s)	340, 373, 455
Bsp143I	GATC	1 cut(s)	61
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	3 cut(s)	250, 274, 395
BspANI	GGCC	3 cut(s)	340, 373, 455
BspCNI	CTCAG	1 cut(s)	158
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	1 cut(s)	56
BspT107I	GGYRCC	1 cut(s)	193
BsrBI	CCGCTC	2 cut(s)	252, 274
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	235
BstAPI	GCANNNNNTGC	1 cut(s)	292
BstDEI	CTNAG	2 cut(s)	126, 145
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	2 cut(s)	223, 274
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	2 cut(s)	148, 232
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	2 cut(s)	292, 401
BstV1I	GCAGC	1 cut(s)	161
BsuRI	GGCC	3 cut(s)	340, 373, 455
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	223, 274
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	159
Cfr13I	GGNCC	2 cut(s)	308, 339
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	44, 194
CviAII	CATG	3 cut(s)	343, 358, 369
CviJI	RGCY	7 cut(s)	19, 59, 97, 340, 373, 404, 455
CviKI_1	RGCY	7 cut(s)	19, 59, 97, 340, 373, 404, 455
CviQI	GTAC	2 cut(s)	44, 194
DdeI	CTNAG	2 cut(s)	126, 145
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
EaeI	YGGCCR	2 cut(s)	371, 453
Eco130I	CCWWGG	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	308
Eco57I	CTGAAG	2 cut(s)	69, 348
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	3 cut(s)	346, 361, 372
FaiI	YATR	9 cut(s)	106, 162, 300, 344, 354, 359, 370, 408, 417
FatI	CATG	3 cut(s)	342, 357, 368
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	2 cut(s)	210, 281
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	68
GluI	GCNGC	1 cut(s)	150
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	3 cut(s)	340, 373, 455
HgaI	GACGC	1 cut(s)	15
Hin1II	CATG	3 cut(s)	346, 361, 372
HinfI	GANTC	2 cut(s)	130, 200
HphI	GGTGA	1 cut(s)	83
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	3 cut(s)	30, 92, 311
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	3 cut(s)	115, 295, 444
HpyF10VI	GCNNNNNNNGC	2 cut(s)	292, 401
HpyF3I	CTNAG	2 cut(s)	126, 145
Hsp92II	CATG	3 cut(s)	346, 361, 372
KpnI	GGTACC	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	2 cut(s)	94, 283
LpnPI	CCDG	8 cut(s)	15, 60, 77, 210, 240, 324, 339, 387
Lsp1109I	GCAGC	1 cut(s)	161
MaeI	CTAG	1 cut(s)	68
MaeIII	GTNAC	2 cut(s)	154, 229
MalI	GATC	1 cut(s)	63
MbiI	CCGCTC	2 cut(s)	252, 274
MboI	GATC	1 cut(s)	61
MboII	GAAGA	2 cut(s)	209, 341
MlsI	TGGCCA	1 cut(s)	373
MluCI	AATT	5 cut(s)	212, 290, 333, 349, 428
MluNI	TGGCCA	1 cut(s)	373
MnlI	CCTC	5 cut(s)	75, 75, 183, 394, 430
Mox20I	TGGCCA	1 cut(s)	373
MroXI	GAANNNNTTC	2 cut(s)	216, 333
MscI	TGGCCA	1 cut(s)	373
MslI	CAYNNNNRTG	1 cut(s)	449
Msp20I	TGGCCA	1 cut(s)	373
MwoI	GCNNNNNNNGC	2 cut(s)	292, 401
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	3 cut(s)	346, 361, 372
NlaIV	GGNNCC	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	154
PdmI	GAANNNNTTC	2 cut(s)	216, 333
PfeI	GAWTC	2 cut(s)	130, 200
PflMI	CCANNNNNTGG	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	2 cut(s)	308, 339
RsaI	GTAC	2 cut(s)	45, 195
RsaNI	GTAC	2 cut(s)	44, 194
RseI	CAYNNNNRTG	1 cut(s)	449
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	2 cut(s)	308, 339
SetI	ASST	8 cut(s)	21, 49, 61, 73, 99, 161, 328, 441
SinI	GGWCC	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	449
Sse9I	AATT	5 cut(s)	212, 290, 333, 349, 428
SsiI	CCGC	3 cut(s)	250, 274, 395
SspI	AATATT	1 cut(s)	319
SspMI	CTAG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	235
TaqI	TCGA	1 cut(s)	80
TasI	AATT	5 cut(s)	212, 290, 333, 349, 428
TfiI	GAWTC	2 cut(s)	130, 200
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	225
TspGWI	ACGGA	2 cut(s)	256, 393
TspRI	CASTG	1 cut(s)	159
Van91I	CCANNNNNTGG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	308
XapI	RAATTY	2 cut(s)	212, 333
XmnI	GAANNNNTTC	2 cut(s)	216, 333
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.