Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003964

Physical Location & Seq

Genomic Coordinates Forward (+)

46383311 .. 46385083

Gene Structure 1773 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG326900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGACTGTCACGATTTGCTTCTATTATCAATTTATCATATCAAATTGTAAAATGTTTTTCAATATGGTATATTGGCTACAGGCAGAAACCTTGATTACATTTATCTGGCAGCTATCTGCGTCTGGAGATAGTGGAGTACCTGAAGTGGTAGCTGATCCTCTAGGTGAAGTTTCGAGGACATTTCAGGAGCTTGGAATATGTGTTGTGCAACAATGTGCTAAGATTCGCCAACAAGTCTCAGCAGCAGTGACCTATGATAAATCTATCAAGGCAATAAGAGTGAGGGTACCAGATTCAGATGATGAATTTCTTCTCCATCCTGTAACTGTGAGACGGAATGACCGCTCTGCCCAAAGTGTGGATGAGCGGATAGGGGAGCAAAAATTGCAGTATAATGATGGTCCAGAAAATATTGAACCTGAAGAAATTCGGCCCATGGAAAATTATGCCATGTCAATAACATGGCCAGACGGATTTAGTCGGGTAAAACATGTTTCGTTTGAATATTTTAGTCAAAAGGATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0051186 GO:0051536 GO:0051540 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF971 FeS_assembly_P ParA

Protein Analysis

175

Amino Acids

20.23

Weight (kDa)

4.86

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GBBH-like_N	PF06155	98 - 160	7.3e-07	Gamma-butyrobetaine hydroxylase-like, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003964)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0332011 RchiOBHm_Chr2g0090851 RchiOBHm_Chr2g0147101 RchiOBHm_Chr3g0496131
rosa_multiflora	Rmu_sc0002882.1_g000018 Rmu_sc0030390.1_g000001
rosa_samantha	Rh1DG125700 Rh2AG358500 Rh2AG463300 Rh2CG450100 Rh2DG320200 Rh3AG171400 Rh3AG326900 Rh3BG097800 Rh3BG144000 Rh3BG197000 Rh3CG145400 Rh3CG187900 Rh3DG145200 Rh4AG145300 Rh4AG256400 Rh4BG261800 Rh4DG132600 Rh5AG231200 Rh5AG444900 Rh5BG346900 Rh5CG263900 Rh5CG479600 Rh5DG360000 Rh6CG162300 Rh6DG153900 Rh7AG437000 Rh7BG440000
rosa_wichuraiana	Rw5G029020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	286
AccB1I	GGYRCC	1 cut(s)	286
AccB7I	CCANNNNNTGG	1 cut(s)	358
AccBSI	CCGCTC	2 cut(s)	345, 367
AciI	CCGC	2 cut(s)	343, 367
AclWI	GGATC	1 cut(s)	149
AcoI	YGGCCR	1 cut(s)	464
AcsI	RAATTY	2 cut(s)	305, 426
AcuI	CTGAAG	2 cut(s)	162, 441
AfaI	GTAC	2 cut(s)	138, 288
AfiI	CCNNNNNNNGG	1 cut(s)	358
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	3 cut(s)	61, 416, 503
AluBI	AGCT	3 cut(s)	112, 152, 190
AluI	AGCT	3 cut(s)	112, 152, 190
Alw26I	GTCTC	2 cut(s)	241, 325
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	2 cut(s)	431, 464
ApeKI	GCWGC	2 cut(s)	109, 242
ApoI	RAATTY	2 cut(s)	305, 426
Asp700I	GAANNNNTTC	2 cut(s)	309, 426
Asp718I	GGTACC	1 cut(s)	286
AspS9I	GGNCC	2 cut(s)	401, 432
AsuHPI	GGTGA	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	401
BalI	TGGCCA	1 cut(s)	466
BanI	GGYRCC	1 cut(s)	286
BbvI	GCAGC	2 cut(s)	121, 254
BccI	CCATC	2 cut(s)	324, 392
BcoDI	GTCTC	2 cut(s)	241, 325
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	77
BisI	GCNGC	2 cut(s)	110, 243
BlsI	GCNGC	2 cut(s)	111, 244
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	2 cut(s)	401, 432
BmiI	GGNNCC	1 cut(s)	288
BpmI	CTGGAG	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
BseDI	CCNNGG	1 cut(s)	435
BseGI	GGATG	2 cut(s)	316, 367
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	252
BseXI	GCAGC	2 cut(s)	121, 254
BshFI	GGCC	2 cut(s)	433, 466
BshNI	GGYRCC	1 cut(s)	286
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	2 cut(s)	241, 325
BsmBI	CGTCTC	1 cut(s)	325
BsnI	GGCC	2 cut(s)	433, 466
Bsp143I	GATC	1 cut(s)	154
Bsp19I	CCATGG	1 cut(s)	435
BspACI	CCGC	2 cut(s)	343, 367
BspANI	GGCC	2 cut(s)	433, 466
BspCNI	CTCAG	1 cut(s)	251
BspLI	GGNNCC	1 cut(s)	288
BspPI	GGATC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	286
BsrBI	CCGCTC	2 cut(s)	345, 367
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	1 cut(s)	154
BssT1I	CCWWGG	1 cut(s)	435
Bst4CI	ACNGT	2 cut(s)	7, 328
BstAPI	GCANNNNNTGC	1 cut(s)	385
BstDEI	CTNAG	2 cut(s)	219, 238
BstDSI	CCRYGG	1 cut(s)	435
BstF5I	GGATG	2 cut(s)	316, 367
BstKTI	GATC	1 cut(s)	157
BstMAI	GTCTC	2 cut(s)	241, 325
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	385
BstNSI	RCATGY	1 cut(s)	494
BstSFI	CTRYAG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	121, 254
BsuRI	GGCC	2 cut(s)	433, 466
BtgI	CCRYGG	1 cut(s)	435
BtsCI	GGATG	2 cut(s)	316, 367
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	252
Cfr13I	GGNCC	2 cut(s)	401, 432
CseI	GACGC	1 cut(s)	108
Csp6I	GTAC	2 cut(s)	137, 287
CviAII	CATG	4 cut(s)	436, 451, 462, 491
CviJI	RGCY	6 cut(s)	76, 112, 152, 190, 433, 466
CviKI_1	RGCY	6 cut(s)	76, 112, 152, 190, 433, 466
CviQI	GTAC	2 cut(s)	137, 287
DdeI	CTNAG	2 cut(s)	219, 238
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	464
Eco130I	CCWWGG	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	401
Eco57I	CTGAAG	2 cut(s)	162, 441
EcoT14I	CCWWGG	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	435
Esp3I	CGTCTC	1 cut(s)	325
FaeI	CATG	4 cut(s)	439, 454, 465, 494
FatI	CATG	4 cut(s)	435, 450, 461, 490
Fnu4HI	GCNGC	2 cut(s)	110, 243
FokI	GGATG	2 cut(s)	303, 374
Fsp4HI	GCNGC	2 cut(s)	110, 243
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	2 cut(s)	110, 243
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	433, 466
HgaI	GACGC	1 cut(s)	108
Hin1II	CATG	4 cut(s)	439, 454, 465, 494
HinfI	GANTC	2 cut(s)	223, 293
HphI	GGTGA	1 cut(s)	176
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	4 cut(s)	10, 123, 185, 404
HpyCH4III	ACNGT	2 cut(s)	7, 328
HpyCH4V	TGCA	2 cut(s)	208, 388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	385
HpyF3I	CTNAG	2 cut(s)	219, 238
Hsp92II	CATG	4 cut(s)	439, 454, 465, 494
KpnI	GGTACC	1 cut(s)	290
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	2 cut(s)	187, 376
Lsp1109I	GCAGC	2 cut(s)	121, 254
MaeI	CTAG	1 cut(s)	161
MaeIII	GTNAC	3 cut(s)	7, 247, 322
MalI	GATC	1 cut(s)	156
MbiI	CCGCTC	2 cut(s)	345, 367
MboI	GATC	1 cut(s)	154
MboII	GAAGA	2 cut(s)	302, 434
MlsI	TGGCCA	1 cut(s)	466
MluCI	AATT	6 cut(s)	29, 43, 305, 383, 426, 442
MluNI	TGGCCA	1 cut(s)	466
MnlI	CCTC	3 cut(s)	168, 168, 276
Mox20I	TGGCCA	1 cut(s)	466
MroXI	GAANNNNTTC	2 cut(s)	309, 426
MscI	TGGCCA	1 cut(s)	466
Msp20I	TGGCCA	1 cut(s)	466
MwoI	GCNNNNNNNGC	1 cut(s)	385
NcoI	CCATGG	1 cut(s)	435
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	4 cut(s)	439, 454, 465, 494
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	2 cut(s)	7, 247
NspI	RCATGY	1 cut(s)	494
PciI	ACATGT	1 cut(s)	490
PdmI	GAANNNNTTC	2 cut(s)	309, 426
PfeI	GAWTC	2 cut(s)	223, 293
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	2 cut(s)	111, 244
PscI	ACATGT	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	2 cut(s)	401, 432
RsaI	GTAC	2 cut(s)	138, 288
RsaNI	GTAC	2 cut(s)	137, 287
SatI	GCNGC	2 cut(s)	110, 243
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	2 cut(s)	401, 432
SetI	ASST	8 cut(s)	92, 114, 142, 154, 166, 192, 254, 421
SfcI	CTRYAG	1 cut(s)	77
SinI	GGWCC	1 cut(s)	401
Sse9I	AATT	6 cut(s)	29, 43, 305, 383, 426, 442
SsiI	CCGC	2 cut(s)	343, 367
SspI	AATATT	2 cut(s)	412, 506
SspMI	CTAG	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	2 cut(s)	7, 328
TaqI	TCGA	1 cut(s)	173
TasI	AATT	6 cut(s)	29, 43, 305, 383, 426, 442
TfiI	GAWTC	2 cut(s)	223, 293
TscAI	CASTG	1 cut(s)	252
TseFI	GTSAC	2 cut(s)	7, 247
TseI	GCWGC	2 cut(s)	109, 242
Tsp45I	GTSAC	2 cut(s)	7, 247
TspDTI	ATGAA	1 cut(s)	318
TspGWI	ACGGA	2 cut(s)	349, 486
TspRI	CASTG	1 cut(s)	252
Van91I	CCANNNNNTGG	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	401
XapI	RAATTY	2 cut(s)	305, 426
XceI	RCATGY	1 cut(s)	494
XmnI	GAANNNNTTC	2 cut(s)	309, 426
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.