Rh6DG153900

Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
22876832 .. 22881251
4420 bp
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UTR
Exon/CDS
Intron
Rh6DG153900.1

Sequence Viewer

Length: 537 bp
ATGGGATTTTTTGATGGATTGCCAGTGTCTCGAGACAAGGAAGATATGCAGAAATCAGATTCTCTGGATAGCTTATTTGGCGACAAAGATGCAAGTGGTGCTCTGGAAGTTTATGATTTTAGCTCAAATTTTGTATTGTGTTTCAGCAACTTGTGGAGGACTACTTCTGAAGAGAAGAGGGAGTTGGAGCGCCTTGAAAAACTATTATATAATTCAGTTCGTCGAGCTGCAGAAGTTCATCGCCAGGTACGGAAATACATCAGAGGGATTTTAAAGCCTGGAATGTTGATGACTGATTTGTGTGAGACTTTGGAGAACACAGTCCGTAAGTTAATATCTGAGAATGGCCTGGAAGCAGGCATTGCATTCCCCACAGGATGCTCTTTGAATTGTCTTTCCTGTTTGTTCCTGTTCCTATGTGGGCATCCAGAGTCTAGAATTGTTGTGCGTCTTTGTGATGTTGGTGCTGCAATCCAAGAAGTGATGGAATCATATGAGGTTGAAATAAATGGGAAGGTGTATCAAGGGACTTTTTGA

Protein Analysis

178

Amino Acids

20.11

Weight (kDa)

5.07

Isoelectric Point (pI)

31.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 127
AcuI CTGAAG 1 cut(s) 189
AfaI GTAC 1 cut(s) 249
AgsI TTSAA 3 cut(s) 197, 388, 503
AjnI CCWGG 3 cut(s) 243, 277, 348
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AluBI AGCT 3 cut(s) 72, 123, 227
AluI AGCT 3 cut(s) 72, 123, 227
Alw21I GWGCWC 1 cut(s) 103
Alw26I GTCTC 3 cut(s) 27, 33, 299
Ama87I CYCGRG 1 cut(s) 30
AoxI GGCC 1 cut(s) 346
ApeKI GCWGC 2 cut(s) 227, 467
ApoI RAATTY 1 cut(s) 127
AspLEI GCGC 1 cut(s) 192
AvaI CYCGRG 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 103
BbvI GCAGC 2 cut(s) 214, 454
BccI CCATC 2 cut(s) 8, 478
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciT130I CCWGG 3 cut(s) 245, 279, 350
BcoDI GTCTC 3 cut(s) 27, 33, 299
BfaI CTAG 1 cut(s) 435
BfmI CTRYAG 1 cut(s) 228
BfoI RGCGCY 1 cut(s) 193
BisI GCNGC 2 cut(s) 228, 468
BlsI GCNGC 2 cut(s) 229, 469
Bme1390I CCNGG 3 cut(s) 245, 279, 350
BmeT110I CYCGRG 1 cut(s) 30
BmrFI CCNGG 3 cut(s) 245, 279, 350
BmsI GCATC 3 cut(s) 79, 368, 433
Bse1I ACTGG 1 cut(s) 23
Bse3DI GCAATG 1 cut(s) 360
BseBI CCWGG 3 cut(s) 245, 279, 350
BseGI GGATG 2 cut(s) 383, 424
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 1 cut(s) 23
BseXI GCAGC 2 cut(s) 214, 454
BshFI GGCC 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 103
BsiHKCI CYCGRG 1 cut(s) 30
BsmAI GTCTC 3 cut(s) 27, 33, 299
BsmI GAATGC 1 cut(s) 365
BsnI GGCC 1 cut(s) 348
BsoBI CYCGRG 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 103
BspANI GGCC 1 cut(s) 348
BspCNI CTCAG 1 cut(s) 331
BspMAI CTGCAG 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 360
BsrI ACTGG 1 cut(s) 23
Bst2UI CCWGG 3 cut(s) 245, 279, 350
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 2 cut(s) 165, 170
BstAPI GCANNNNNTGC 2 cut(s) 98, 362
BstC8I GCNNGC 1 cut(s) 358
BstDEI CTNAG 1 cut(s) 339
BstF5I GGATG 2 cut(s) 383, 424
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 1 cut(s) 192
BstMAI GTCTC 3 cut(s) 27, 33, 299
BstMWI GCNNNNNNNGC 3 cut(s) 78, 98, 362
BstNI CCWGG 3 cut(s) 245, 279, 350
BstSCI CCNGG 3 cut(s) 243, 277, 348
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 2 cut(s) 214, 454
BsuRI GGCC 1 cut(s) 348
BtgZI GCGATG 1 cut(s) 224
BtsCI GGATG 2 cut(s) 383, 424
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 358
CfoI GCGC 1 cut(s) 192
CseI GACGC 1 cut(s) 437
Csp6I GTAC 1 cut(s) 248
CviJI RGCY 5 cut(s) 72, 123, 227, 277, 348
CviKI_1 RGCY 5 cut(s) 72, 123, 227, 277, 348
CviQI GTAC 1 cut(s) 248
DdeI CTNAG 1 cut(s) 339
DraI TTTAAA 1 cut(s) 273
Eam1104I CTCTTC 2 cut(s) 165, 170
EarI CTCTTC 2 cut(s) 165, 170
Eco57I CTGAAG 1 cut(s) 189
Eco88I CYCGRG 1 cut(s) 30
EcoRII CCWGG 3 cut(s) 243, 277, 348
FaiI YATR 7 cut(s) 47, 114, 208, 210, 418, 493, 495
FauNDI CATATG 1 cut(s) 493
Fnu4HI GCNGC 2 cut(s) 228, 468
FokI GGATG 2 cut(s) 390, 411
Fsp4HI GCNGC 2 cut(s) 228, 468
FspBI CTAG 1 cut(s) 435
GlaI GCGC 1 cut(s) 191
GluI GCNGC 2 cut(s) 228, 468
HaeII RGCGCY 1 cut(s) 193
HaeIII GGCC 1 cut(s) 348
HgaI GACGC 1 cut(s) 437
HhaI GCGC 1 cut(s) 192
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HinfI GANTC 3 cut(s) 59, 431, 488
Hpy188I TCNGA 4 cut(s) 58, 169, 263, 340
Hpy188III TCNNGA 6 cut(s) 30, 32, 65, 104, 428, 435
Hpy99I CGWCG 1 cut(s) 225
HpyAV CCTTC 1 cut(s) 508
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4V TGCA 5 cut(s) 49, 92, 230, 365, 470
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 98, 362
HpyF3I CTNAG 1 cut(s) 339
HspAI GCGC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 2 cut(s) 214, 454
LweI GCATC 3 cut(s) 79, 368, 433
MaeI CTAG 1 cut(s) 435
MboII GAAGA 3 cut(s) 53, 182, 187
MhlI GDGCHC 1 cut(s) 103
MluCI AATT 4 cut(s) 127, 211, 388, 438
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 4 cut(s) 150, 171, 257, 490
MseI TTAA 2 cut(s) 272, 332
MspR9I CCNGG 3 cut(s) 245, 279, 350
Mva1269I GAATGC 1 cut(s) 365
MvaI CCWGG 3 cut(s) 245, 279, 350
MwoI GCNNNNNNNGC 3 cut(s) 78, 98, 362
NdeI CATATG 1 cut(s) 493
PaeR7I CTCGAG 1 cut(s) 30
PctI GAATGC 1 cut(s) 365
PfeI GAWTC 2 cut(s) 59, 488
PkrI GCNGC 2 cut(s) 229, 469
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
Psp6I CCWGG 3 cut(s) 243, 277, 348
PspGI CCWGG 3 cut(s) 243, 277, 348
PstI CTGCAG 1 cut(s) 232
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
SaqAI TTAA 2 cut(s) 272, 332
SatI GCNGC 2 cut(s) 228, 468
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 3 cut(s) 245, 279, 350
SduI GDGCHC 1 cut(s) 103
SetI ASST 6 cut(s) 74, 125, 229, 249, 501, 519
SfaNI GCATC 3 cut(s) 79, 368, 433
SfcI CTRYAG 1 cut(s) 228
Sfr274I CTCGAG 1 cut(s) 30
SlaI CTCGAG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
Sse9I AATT 4 cut(s) 127, 211, 388, 438
SspMI CTAG 1 cut(s) 435
StyD4I CCNGG 3 cut(s) 243, 277, 348
TaaI ACNGT 1 cut(s) 322
TaqI TCGA 2 cut(s) 31, 223
TasI AATT 4 cut(s) 127, 211, 388, 438
TfiI GAWTC 2 cut(s) 59, 488
Tru1I TTAA 2 cut(s) 272, 332
Tru9I TTAA 2 cut(s) 272, 332
TscAI CASTG 1 cut(s) 30
TseI GCWGC 2 cut(s) 227, 467
TspDTI ATGAA 1 cut(s) 227
TspGWI ACGGA 2 cut(s) 265, 314
TspRI CASTG 1 cut(s) 30
XapI RAATTY 1 cut(s) 127
XbaI TCTAGA 1 cut(s) 434
XhoI CTCGAG 1 cut(s) 30
XspI CTAG 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.