Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003964

Physical Location & Seq

Genomic Coordinates Reverse (-)

15885857 .. 15891507

Gene Structure 5651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG171400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAGTGAGTTGGGTTCATATTCTACCTGGAACATAACAGGAACTTACAGAGGTGTGCCATGTGTTGCTGCAATTGAGAATATGAGCCATTTTGATGCTGATGGGAAGCGTCATTACCCATTTGGTAAAGGCTTAGGCTCAGAGTTTGGTATCCCTAATCTATTTGATTTTCCCATTAGACCAACTCTATCTGCGTCTGGAGATCGTGGAGTACCTGAAGTGGTAGCTGATCCTCTAGATAAGCAGTCAGCTTGCAGGGTTCGGATGAGTCATCTTTGGGGGAAAGCCCCTTCACTTTCCCTCTGCAATGAGCAGCTTCCTTCCTTGGAAAAAATTCCAAGGGATCAATGCCGCCTGGCAAACTCCGTTCTGGTCACTGGAGCGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0051186 GO:0051536 GO:0051540 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF971 FeS_assembly_P ParA

Protein Analysis

129

Amino Acids

14.0

Weight (kDa)

6.81

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003964)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0332011 RchiOBHm_Chr2g0090851 RchiOBHm_Chr2g0147101 RchiOBHm_Chr3g0496131
rosa_multiflora	Rmu_sc0002882.1_g000018 Rmu_sc0030390.1_g000001
rosa_samantha	Rh1DG125700 Rh2AG358500 Rh2AG463300 Rh2CG450100 Rh2DG320200 Rh3AG171400 Rh3AG326900 Rh3BG097800 Rh3BG144000 Rh3BG197000 Rh3CG145400 Rh3CG187900 Rh3DG145200 Rh4AG145300 Rh4AG256400 Rh4BG261800 Rh4DG132600 Rh5AG231200 Rh5AG444900 Rh5BG346900 Rh5CG263900 Rh5CG479600 Rh5DG360000 Rh6CG162300 Rh6DG153900 Rh7AG437000 Rh7BG440000
rosa_wichuraiana	Rw5G029020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	352
AclWI	GGATC	2 cut(s)	224, 351
AcsI	RAATTY	1 cut(s)	333
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	1 cut(s)	213
AjnI	CCWGG	2 cut(s)	26, 354
AluBI	AGCT	3 cut(s)	227, 251, 316
AluI	AGCT	3 cut(s)	227, 251, 316
AlwI	GGATC	2 cut(s)	224, 351
ApeKI	GCWGC	2 cut(s)	68, 313
ApoI	RAATTY	1 cut(s)	333
Asp700I	GAANNNNTTC	1 cut(s)	333
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
BbvI	GCAGC	2 cut(s)	55, 325
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	2 cut(s)	28, 356
BciVI	GTATCC	1 cut(s)	161
BfaI	CTAG	2 cut(s)	236, 388
BfuI	GTATCC	1 cut(s)	161
BisI	GCNGC	3 cut(s)	69, 314, 352
BlsI	GCNGC	3 cut(s)	70, 315, 353
Bme1390I	CCNGG	2 cut(s)	28, 356
BmrFI	CCNGG	2 cut(s)	28, 356
BmsI	GCATC	1 cut(s)	85
BpmI	CTGGAG	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	133
BsaJI	CCNNGG	2 cut(s)	324, 338
Bse1I	ACTGG	1 cut(s)	382
Bse3DI	GCAATG	1 cut(s)	313
BseBI	CCWGG	2 cut(s)	28, 356
BseDI	CCNNGG	2 cut(s)	324, 338
BseGI	GGATG	1 cut(s)	270
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	382
BseXI	GCAGC	2 cut(s)	55, 325
Bsp143I	GATC	3 cut(s)	202, 229, 343
BspACI	CCGC	1 cut(s)	352
BspCNI	CTCAG	1 cut(s)	152
BspPI	GGATC	2 cut(s)	224, 351
BsrDI	GCAATG	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	2 cut(s)	324, 338
BssMI	GATC	3 cut(s)	202, 229, 343
BssT1I	CCWWGG	2 cut(s)	324, 338
Bst2UI	CCWGG	2 cut(s)	28, 356
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	2 cut(s)	133, 139
BstF5I	GGATG	1 cut(s)	270
BstKTI	GATC	3 cut(s)	205, 232, 346
BstMBI	GATC	3 cut(s)	202, 229, 343
BstNI	CCWGG	2 cut(s)	28, 356
BstSCI	CCNGG	2 cut(s)	26, 354
BstV1I	GCAGC	2 cut(s)	55, 325
BsuI	GTATCC	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	1 cut(s)	253
CseI	GACGC	3 cut(s)	98, 183, 372
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	1 cut(s)	60
CviJI	RGCY	7 cut(s)	87, 132, 138, 227, 251, 287, 316
CviKI_1	RGCY	7 cut(s)	87, 132, 138, 227, 251, 287, 316
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	2 cut(s)	133, 139
DpnI	GATC	3 cut(s)	204, 231, 345
DpnII	GATC	3 cut(s)	202, 229, 343
Eco130I	CCWWGG	2 cut(s)	324, 338
Eco57I	CTGAAG	1 cut(s)	237
EcoRII	CCWGG	2 cut(s)	26, 354
EcoT14I	CCWWGG	2 cut(s)	324, 338
ErhI	CCWWGG	2 cut(s)	324, 338
FaeI	CATG	1 cut(s)	63
FaiI	YATR	4 cut(s)	19, 35, 61, 83
FatI	CATG	1 cut(s)	59
Fnu4HI	GCNGC	3 cut(s)	69, 314, 352
FokI	GGATG	1 cut(s)	277
Fsp4HI	GCNGC	3 cut(s)	69, 314, 352
FspBI	CTAG	2 cut(s)	236, 388
GluI	GCNGC	3 cut(s)	69, 314, 352
GsuI	CTGGAG	1 cut(s)	219
HgaI	GACGC	3 cut(s)	98, 183, 372
Hin1II	CATG	1 cut(s)	63
HinfI	GANTC	1 cut(s)	268
Hpy188I	TCNGA	2 cut(s)	142, 264
Hpy188III	TCNNGA	2 cut(s)	198, 236
HpyAV	CCTTC	2 cut(s)	300, 330
HpyCH4V	TGCA	3 cut(s)	71, 255, 306
HpyF3I	CTNAG	2 cut(s)	133, 139
Hsp92II	CATG	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	202, 229, 343
LmnI	GCTCC	1 cut(s)	380
Lsp1109I	GCAGC	2 cut(s)	55, 325
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	2 cut(s)	236, 388
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	3 cut(s)	204, 231, 345
MboI	GATC	3 cut(s)	202, 229, 343
MfeI	CAATTG	1 cut(s)	72
MluCI	AATT	2 cut(s)	72, 333
MlyI	GAGTC	1 cut(s)	277
MnlI	CCTC	3 cut(s)	44, 243, 311
MroXI	GAANNNNTTC	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	28, 356
MunI	CAATTG	1 cut(s)	72
MvaI	CCWGG	2 cut(s)	28, 356
NdeII	GATC	3 cut(s)	202, 229, 343
NlaIII	CATG	1 cut(s)	63
NmuCI	GTSAC	1 cut(s)	373
PdmI	GAANNNNTTC	1 cut(s)	333
PkrI	GCNGC	3 cut(s)	70, 315, 353
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
Psp6I	CCWGG	2 cut(s)	26, 354
PspGI	CCWGG	2 cut(s)	26, 354
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	93
SatI	GCNGC	3 cut(s)	69, 314, 352
Sau3AI	GATC	3 cut(s)	202, 229, 343
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	2 cut(s)	28, 356
SetI	ASST	6 cut(s)	29, 55, 217, 229, 253, 318
SfaNI	GCATC	1 cut(s)	85
SmiMI	CAYNNNNRTG	1 cut(s)	93
Sse9I	AATT	2 cut(s)	72, 333
SsiI	CCGC	1 cut(s)	352
SspMI	CTAG	2 cut(s)	236, 388
StyD4I	CCNGG	2 cut(s)	26, 354
StyI	CCWWGG	2 cut(s)	324, 338
TasI	AATT	2 cut(s)	72, 333
TauI	GCSGC	1 cut(s)	354
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	2 cut(s)	68, 313
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	1 cut(s)	6
TspGWI	ACGGA	1 cut(s)	355
TspRI	CASTG	1 cut(s)	382
XapI	RAATTY	1 cut(s)	333
XbaI	TCTAGA	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	2 cut(s)	236, 388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.