Rh2CG450100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0003964
Physical Location & Seq
Reverse (-)
61089185 .. 61090217
1033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG450100.1

Sequence Viewer

Length: 264 bp
ATGGAGCCCAGTACGGAACCGAACAGAGAGAGAAGCAGTCGAGAAGGAAGCATGACCAACATCACCGATGACTACCTTGAATTTGTGGCGGAGACGCGTGTATTTGATACCATTTCTTTCAGGAAAGAAGAAACAGATCATCTTACAAAAGCGGCACCGGCCGGGGTGGACATACCTGCGATCAGATTCTGCCTCCACAAGTCCCCTATTTCTTCCACTGCCGGCTGCGACAGACTATGCAATATTGTAAACCAGGAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.8

Weight (kDa)

5.08

Isoelectric Point (pI)

58.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 184
AccB1I GGYRCC 1 cut(s) 154
AccII CGCG 1 cut(s) 97
AciI CCGC 2 cut(s) 89, 152
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 1 cut(s) 80
AfaI GTAC 1 cut(s) 13
AflIII ACRYGT 1 cut(s) 95
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 86
AlwNI CAGNNNCTG 1 cut(s) 189
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 225
ApoI RAATTY 1 cut(s) 80
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 55
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 254
BcnI CCSGG 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 86
BfuAI ACCTGC 1 cut(s) 184
BisI GCNGC 2 cut(s) 153, 226
BlsI GCNGC 2 cut(s) 154, 227
Bme1390I CCNGG 2 cut(s) 163, 254
BmiI GGNNCC 3 cut(s) 6, 18, 156
BmrFI CCNGG 2 cut(s) 163, 254
BmrI ACTGGG 1 cut(s) 3
BmuI ACTGGG 1 cut(s) 3
BpuMI CCSGG 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 162
Bse118I RCCGGY 2 cut(s) 157, 221
Bse1I ACTGG 1 cut(s) 9
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 9
BseX3I CGGCCG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 212
Bsh1236I CGCG 1 cut(s) 97
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 1 cut(s) 161
BshNI GGYRCC 1 cut(s) 154
BsiEI CGRYCG 1 cut(s) 162
BsiSI CCGG 3 cut(s) 158, 162, 222
BslFI GGGAC 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 86
BsmBI CGTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 2 cut(s) 136, 180
BspACI CCGC 2 cut(s) 89, 152
BspANI GGCC 1 cut(s) 161
BspFNI CGCG 1 cut(s) 97
BspLI GGNNCC 3 cut(s) 6, 18, 156
BspMI ACCTGC 1 cut(s) 184
BspT107I GGYRCC 1 cut(s) 154
BsrFI RCCGGY 2 cut(s) 157, 221
BsrI ACTGG 1 cut(s) 9
BssAI RCCGGY 2 cut(s) 157, 221
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 2 cut(s) 136, 180
Bst2UI CCWGG 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 223
BstFNI CGCG 1 cut(s) 97
BstKTI GATC 2 cut(s) 139, 183
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 2 cut(s) 136, 180
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 254
BstSCI CCNGG 2 cut(s) 161, 252
BstUI CGCG 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 212
BstZI CGGCCG 1 cut(s) 159
BsuRI GGCC 1 cut(s) 161
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
BveI ACCTGC 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 223
CaiI CAGNNNCTG 1 cut(s) 189
Cfr10I RCCGGY 2 cut(s) 157, 221
CseI GACGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 12
CviAII CATG 1 cut(s) 52
CviJI RGCY 3 cut(s) 7, 161, 225
CviKI_1 RGCY 3 cut(s) 7, 161, 225
CviQI GTAC 1 cut(s) 12
DpnI GATC 2 cut(s) 138, 182
DpnII GATC 2 cut(s) 136, 180
EaeI YGGCCR 1 cut(s) 159
EagI CGGCCG 1 cut(s) 159
EciI GGCGGA 1 cut(s) 104
EclXI CGGCCG 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 9
Eco52I CGGCCG 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 1 cut(s) 55
FaiI YATR 3 cut(s) 53, 173, 238
FaqI GGGAC 1 cut(s) 187
FatI CATG 1 cut(s) 51
Fnu4HI GCNGC 2 cut(s) 153, 226
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 2 cut(s) 153, 226
GluI GCNGC 2 cut(s) 153, 226
HaeIII GGCC 1 cut(s) 161
HapII CCGG 3 cut(s) 158, 162, 222
HgaI GACGC 1 cut(s) 103
Hin1II CATG 1 cut(s) 55
HinfI GANTC 1 cut(s) 186
HpaII CCGG 3 cut(s) 158, 162, 222
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 2 cut(s) 169, 250
Hpy188I TCNGA 1 cut(s) 185
Hpy188III TCNNGA 2 cut(s) 41, 121
Hpy8I GTNNAC 2 cut(s) 169, 250
HpyAV CCTTC 1 cut(s) 38
HpyCH4V TGCA 1 cut(s) 240
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
Hsp92II CATG 1 cut(s) 55
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
Kzo9I GATC 2 cut(s) 136, 180
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 7 cut(s) 22, 106, 171, 175, 189, 235, 239
Lsp1109I GCAGC 1 cut(s) 212
MalI GATC 2 cut(s) 138, 182
MboI GATC 2 cut(s) 136, 180
MboII GAAGA 2 cut(s) 140, 204
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 1 cut(s) 80
MluI ACGCGT 1 cut(s) 95
MnlI CCTC 1 cut(s) 203
MroNI GCCGGC 1 cut(s) 221
MspI CCGG 3 cut(s) 158, 162, 222
MspR9I CCNGG 2 cut(s) 163, 254
MvaI CCWGG 1 cut(s) 254
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 158
NaeI GCCGGC 1 cut(s) 223
NciI CCSGG 1 cut(s) 163
NdeII GATC 2 cut(s) 136, 180
NgoMIV GCCGGC 1 cut(s) 221
NlaIII CATG 1 cut(s) 55
NlaIV GGNNCC 3 cut(s) 6, 18, 156
PdiI GCCGGC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 186
PkrI GCNGC 2 cut(s) 154, 227
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 3 cut(s) 6, 18, 156
PstNI CAGNNNCTG 1 cut(s) 189
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SatI GCNGC 2 cut(s) 153, 226
Sau3AI GATC 2 cut(s) 136, 180
ScrFI CCNGG 2 cut(s) 163, 254
SduI GDGCHC 1 cut(s) 9
SetI ASST 2 cut(s) 78, 178
Sse9I AATT 1 cut(s) 80
SsiI CCGC 2 cut(s) 89, 152
SspI AATATT 1 cut(s) 244
StyD4I CCNGG 2 cut(s) 161, 252
TaqI TCGA 1 cut(s) 40
TasI AATT 1 cut(s) 80
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 186
TscAI CASTG 1 cut(s) 223
TseI GCWGC 1 cut(s) 225
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 1 cut(s) 223
XapI RAATTY 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.