Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003964

Physical Location & Seq

Genomic Coordinates Reverse (-)

17466458 .. 17473393

Gene Structure 6936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG197000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCTTCCTGAGAACTCCGCCCATGGAGCCTCTGATTCCGGCATCCCGGTGCCATGTGTTGCTGCAATTGAGAATATGAGCCATTTTGATGCTGATGGGAAGCGTCATTACCCATTTGGTAAAGGCTTAGGCTCAGAGCCTTGTGATGCAGATAAGCAGTCAGCTTGCAGGGTTCGGATGAGTCATCTTTGGGGGAAAGCCCCTTCACTTTCCCTCTGCAATGAGCAGCTTCCTTCCTTGGAAAAAATTCCAAGGGATCAATGCCGCCTGGCAAACTCCGTTCTGGTCACTGGAGCGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0051186 GO:0051536 GO:0051540 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF971 FeS_assembly_P ParA

Protein Analysis

100

Amino Acids

10.66

Weight (kDa)

6.39

Isoelectric Point (pI)

56.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003964)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0332011 RchiOBHm_Chr2g0090851 RchiOBHm_Chr2g0147101 RchiOBHm_Chr3g0496131
rosa_multiflora	Rmu_sc0002882.1_g000018 Rmu_sc0030390.1_g000001
rosa_samantha	Rh1DG125700 Rh2AG358500 Rh2AG463300 Rh2CG450100 Rh2DG320200 Rh3AG171400 Rh3AG326900 Rh3BG097800 Rh3BG144000 Rh3BG197000 Rh3CG145400 Rh3CG187900 Rh3DG145200 Rh4AG145300 Rh4AG256400 Rh4BG261800 Rh4DG132600 Rh5AG231200 Rh5AG444900 Rh5BG346900 Rh5CG263900 Rh5CG479600 Rh5DG360000 Rh6CG162300 Rh6DG153900 Rh7AG437000 Rh7BG440000
rosa_wichuraiana	Rw5G029020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	49
AciI	CCGC	2 cut(s)	18, 265
AclWI	GGATC	1 cut(s)	264
AcsI	RAATTY	1 cut(s)	246
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	2 cut(s)	164, 229
AluI	AGCT	2 cut(s)	164, 229
AlwI	GGATC	1 cut(s)	264
ApeKI	GCWGC	2 cut(s)	62, 226
ApoI	RAATTY	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	246
AsuC2I	CCSGG	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	49
BarI	GAAGNNNNNNTAC	2 cut(s)	92, 124
BbvI	GCAGC	2 cut(s)	49, 238
BccI	CCATC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	269
BcnI	CCSGG	1 cut(s)	47
BfaI	CTAG	1 cut(s)	301
BisI	GCNGC	3 cut(s)	63, 227, 265
BlsI	GCNGC	3 cut(s)	64, 228, 266
Bme1390I	CCNGG	2 cut(s)	47, 269
BmiI	GGNNCC	2 cut(s)	28, 51
BmrFI	CCNGG	2 cut(s)	47, 269
BmsI	GCATC	3 cut(s)	51, 79, 136
Bpu10I	CCTNAGC	1 cut(s)	127
BpuMI	CCSGG	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	22, 237, 251
Bse1I	ACTGG	1 cut(s)	295
Bse3DI	GCAATG	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	3 cut(s)	22, 237, 251
BseGI	GGATG	2 cut(s)	42, 183
BseMI	GCAATG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	295
BseXI	GCAGC	2 cut(s)	49, 238
BshNI	GGYRCC	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	39, 47
Bsp143I	GATC	1 cut(s)	256
Bsp19I	CCATGG	1 cut(s)	22
BspACI	CCGC	2 cut(s)	18, 265
BspCNI	CTCAG	1 cut(s)	146
BspLI	GGNNCC	2 cut(s)	28, 51
BspPI	GGATC	1 cut(s)	264
BspT107I	GGYRCC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	3 cut(s)	22, 237, 251
BssMI	GATC	1 cut(s)	256
BssT1I	CCWWGG	3 cut(s)	22, 237, 251
Bst2UI	CCWGG	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	3 cut(s)	9, 127, 133
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	2 cut(s)	42, 183
BstKTI	GATC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	45, 267
BstV1I	GCAGC	2 cut(s)	49, 238
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	2 cut(s)	42, 183
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	166
CseI	GACGC	2 cut(s)	92, 285
CviAII	CATG	2 cut(s)	23, 54
CviJI	RGCY	8 cut(s)	29, 81, 126, 132, 139, 164, 200, 229
CviKI_1	RGCY	8 cut(s)	29, 81, 126, 132, 139, 164, 200, 229
DdeI	CTNAG	3 cut(s)	9, 127, 133
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
EciI	GGCGGA	1 cut(s)	7
Eco130I	CCWWGG	3 cut(s)	22, 237, 251
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	3 cut(s)	22, 237, 251
ErhI	CCWWGG	3 cut(s)	22, 237, 251
FaeI	CATG	2 cut(s)	26, 57
FaiI	YATR	3 cut(s)	24, 55, 77
FatI	CATG	2 cut(s)	22, 53
Fnu4HI	GCNGC	3 cut(s)	63, 227, 265
FokI	GGATG	2 cut(s)	29, 190
Fsp4HI	GCNGC	3 cut(s)	63, 227, 265
FspBI	CTAG	1 cut(s)	301
GluI	GCNGC	3 cut(s)	63, 227, 265
HapII	CCGG	2 cut(s)	39, 47
HgaI	GACGC	2 cut(s)	92, 285
Hin1II	CATG	2 cut(s)	26, 57
HinfI	GANTC	2 cut(s)	35, 181
HpaII	CCGG	2 cut(s)	39, 47
Hpy188I	TCNGA	3 cut(s)	34, 136, 177
Hpy188III	TCNNGA	1 cut(s)	8
HpyAV	CCTTC	2 cut(s)	213, 243
HpyCH4V	TGCA	4 cut(s)	65, 149, 168, 219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	3 cut(s)	9, 127, 133
Hsp92II	CATG	2 cut(s)	26, 57
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	2 cut(s)	26, 293
LpnPI	CCDG	8 cut(s)	21, 52, 60, 154, 254, 269, 276, 281
Lsp1109I	GCAGC	2 cut(s)	49, 238
LweI	GCATC	3 cut(s)	51, 79, 136
MaeI	CTAG	1 cut(s)	301
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MfeI	CAATTG	1 cut(s)	66
MluCI	AATT	2 cut(s)	66, 246
MlyI	GAGTC	1 cut(s)	190
MnlI	CCTC	2 cut(s)	40, 224
MroXI	GAANNNNTTC	1 cut(s)	246
MslI	CAYNNNNRTG	2 cut(s)	47, 87
MspI	CCGG	2 cut(s)	39, 47
MspR9I	CCNGG	2 cut(s)	47, 269
MunI	CAATTG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	26
NciI	CCSGG	1 cut(s)	47
NcoI	CCATGG	1 cut(s)	22
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	2 cut(s)	26, 57
NlaIV	GGNNCC	2 cut(s)	28, 51
NmuCI	GTSAC	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	3 cut(s)	64, 228, 266
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	28, 51
RseI	CAYNNNNRTG	2 cut(s)	47, 87
SatI	GCNGC	3 cut(s)	63, 227, 265
Sau3AI	GATC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	2 cut(s)	47, 269
SetI	ASST	2 cut(s)	166, 231
SfaNI	GCATC	3 cut(s)	51, 79, 136
SmiMI	CAYNNNNRTG	2 cut(s)	47, 87
Sse9I	AATT	2 cut(s)	66, 246
SsiI	CCGC	2 cut(s)	18, 265
SspMI	CTAG	1 cut(s)	301
StyD4I	CCNGG	2 cut(s)	45, 267
StyI	CCWWGG	3 cut(s)	22, 237, 251
TasI	AATT	2 cut(s)	66, 246
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	35
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	2 cut(s)	62, 226
Tsp45I	GTSAC	1 cut(s)	286
TspGWI	ACGGA	1 cut(s)	268
TspRI	CASTG	1 cut(s)	295
XapI	RAATTY	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.