Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003964

Physical Location & Seq

Genomic Coordinates Reverse (-)

57094651 .. 57096024

Gene Structure 1374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG256400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAGTGAGTTGGGTTCATATTCTACCTGGAACATAACAGGAACTTACAGAGGTGTGCCATGTGTTGCTGCAATTGAGAATATGAGCCATTTTGATGCTGATGGGAAGCGTCATTACCCATTTGGTAAAGGCTTAGGCTCAGAGGTTGTAAAGCAGTTTGGTATCCCTAATCTATTTGATTTTCCCATTAGACCAACTCTATCTGCGTCTGGAGATCGTGGAGTACCTGAAGTGGTAGCTGATCCTGTAGGTGAAGTTTCTAAGACATTTCAGGAGCTTGGAATATGTGTTGTGCAACAATGTGCTAAGATTCACCAACAAGTTGAAACTGTGATGGAAGCCAAACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0051186 GO:0051536 GO:0051540 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF971 FeS_assembly_P ParA

Protein Analysis

116

Amino Acids

12.62

Weight (kDa)

5.52

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ParA	PF10609	18 - 93	2.9e-09	NUBPL iron-transfer P-loop NTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003964)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0332011 RchiOBHm_Chr2g0090851 RchiOBHm_Chr2g0147101 RchiOBHm_Chr3g0496131
rosa_multiflora	Rmu_sc0002882.1_g000018 Rmu_sc0030390.1_g000001
rosa_samantha	Rh1DG125700 Rh2AG358500 Rh2AG463300 Rh2CG450100 Rh2DG320200 Rh3AG171400 Rh3AG326900 Rh3BG097800 Rh3BG144000 Rh3BG197000 Rh3CG145400 Rh3CG187900 Rh3DG145200 Rh4AG145300 Rh4AG256400 Rh4BG261800 Rh4DG132600 Rh5AG231200 Rh5AG444900 Rh5BG346900 Rh5CG263900 Rh5CG479600 Rh5DG360000 Rh6CG162300 Rh6DG153900 Rh7AG437000 Rh7BG440000
rosa_wichuraiana	Rw5G029020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	1 cut(s)	225
AgsI	TTSAA	1 cut(s)	326
AjnI	CCWGG	1 cut(s)	26
AluBI	AGCT	2 cut(s)	239, 277
AluI	AGCT	2 cut(s)	239, 277
AlwI	GGATC	1 cut(s)	236
ApeKI	GCWGC	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	263, 305
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	2 cut(s)	95, 328
BciT130I	CCWGG	1 cut(s)	28
BciVI	GTATCC	1 cut(s)	173
BfaI	CTAG	1 cut(s)	349
BfmI	CTRYAG	1 cut(s)	246
BfuI	GTATCC	1 cut(s)	173
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme1390I	CCNGG	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	28
BmsI	GCATC	1 cut(s)	85
BpmI	CTGGAG	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	55
Bsp143I	GATC	2 cut(s)	214, 241
BspCNI	CTCAG	1 cut(s)	152
BspPI	GGATC	1 cut(s)	236
BssMI	GATC	2 cut(s)	214, 241
Bst2UI	CCWGG	1 cut(s)	28
Bst4CI	ACNGT	1 cut(s)	331
BstDEI	CTNAG	4 cut(s)	133, 139, 261, 306
BstKTI	GATC	2 cut(s)	217, 244
BstMBI	GATC	2 cut(s)	214, 241
BstNI	CCWGG	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	26
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	55
BsuI	GTATCC	1 cut(s)	173
CseI	GACGC	2 cut(s)	98, 195
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	1 cut(s)	60
CviJI	RGCY	6 cut(s)	87, 132, 138, 239, 277, 341
CviKI_1	RGCY	6 cut(s)	87, 132, 138, 239, 277, 341
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	4 cut(s)	133, 139, 261, 306
DpnI	GATC	2 cut(s)	216, 243
DpnII	GATC	2 cut(s)	214, 241
Eco57I	CTGAAG	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	26
FaeI	CATG	1 cut(s)	63
FaiI	YATR	5 cut(s)	19, 35, 61, 83, 286
FatI	CATG	1 cut(s)	59
Fnu4HI	GCNGC	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	1 cut(s)	349
GluI	GCNGC	1 cut(s)	69
GsuI	CTGGAG	1 cut(s)	231
HgaI	GACGC	2 cut(s)	98, 195
Hin1II	CATG	1 cut(s)	63
HinfI	GANTC	1 cut(s)	310
HphI	GGTGA	2 cut(s)	263, 305
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	2 cut(s)	210, 272
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4V	TGCA	2 cut(s)	71, 295
HpyF3I	CTNAG	4 cut(s)	133, 139, 261, 306
Hsp92II	CATG	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	214, 241
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	7 cut(s)	13, 24, 40, 195, 240, 257, 258
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	349
MalI	GATC	2 cut(s)	216, 243
MboI	GATC	2 cut(s)	214, 241
MfeI	CAATTG	1 cut(s)	72
MluCI	AATT	1 cut(s)	72
MnlI	CCTC	2 cut(s)	44, 136
MslI	CAYNNNNRTG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	28
MunI	CAATTG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	28
NdeII	GATC	2 cut(s)	214, 241
NlaIII	CATG	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	93
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	2 cut(s)	214, 241
ScrFI	CCNGG	1 cut(s)	28
SetI	ASST	7 cut(s)	29, 55, 147, 229, 241, 253, 279
SfaNI	GCATC	1 cut(s)	85
SfcI	CTRYAG	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	93
Sse9I	AATT	1 cut(s)	72
SspMI	CTAG	1 cut(s)	349
StyD4I	CCNGG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	331
TasI	AATT	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	310
TseI	GCWGC	1 cut(s)	68
TspDTI	ATGAA	1 cut(s)	6
XspI	CTAG	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.