Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003964

Physical Location & Seq

Genomic Coordinates Forward (+)

58814867 .. 58829019

Gene Structure 14153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG437000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGTGGCAGTGCAAAAGCCATGGAACTTACAGAGGTGTGCCATGTGTTGCTGCAATTGAGAATATGAGCCATTTTGATGCTGATGGGAAGCGTCATTACCCATTTGGTAAAGGCTTAGGCTCAGAGGTTGTAAAGCAGTTTGGTATCCCTAATCTATTTGATTTTCCCATTAGACCAACTCTATCTGCGTCTGGAGATCGTGGAGTACCTGAAGAGGTAGCTGATCCTCTAGGTGAAGTTTCTAAGACATTTCAGGAGCTTGGAATATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0051186 GO:0051536 GO:0051540 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF971 FeS_assembly_P ParA

Protein Analysis

90

Amino Acids

9.83

Weight (kDa)

5.84

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ParA	PF10609	12 - 87	1.4e-08	NUBPL iron-transfer P-loop NTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003964)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0332011 RchiOBHm_Chr2g0090851 RchiOBHm_Chr2g0147101 RchiOBHm_Chr3g0496131
rosa_multiflora	Rmu_sc0002882.1_g000018 Rmu_sc0030390.1_g000001
rosa_samantha	Rh1DG125700 Rh2AG358500 Rh2AG463300 Rh2CG450100 Rh2DG320200 Rh3AG171400 Rh3AG326900 Rh3BG097800 Rh3BG144000 Rh3BG197000 Rh3CG145400 Rh3CG187900 Rh3DG145200 Rh4AG145300 Rh4AG256400 Rh4BG261800 Rh4DG132600 Rh5AG231200 Rh5AG444900 Rh5BG346900 Rh5CG263900 Rh5CG479600 Rh5DG360000 Rh6CG162300 Rh6DG153900 Rh7AG437000 Rh7BG440000
rosa_wichuraiana	Rw5G029020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	1 cut(s)	207
AluBI	AGCT	2 cut(s)	221, 259
AluI	AGCT	2 cut(s)	221, 259
AlwI	GGATC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	245
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	77
BciVI	GTATCC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	230
BfuI	GTATCC	1 cut(s)	155
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
BmsI	GCATC	1 cut(s)	67
BpmI	CTGGAG	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	37
Bsp143I	GATC	2 cut(s)	196, 223
Bsp19I	CCATGG	1 cut(s)	19
BspCNI	CTCAG	1 cut(s)	134
BspPI	GGATC	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	2 cut(s)	196, 223
BssT1I	CCWWGG	1 cut(s)	19
Bst6I	CTCTTC	1 cut(s)	207
BstDEI	CTNAG	3 cut(s)	115, 121, 243
BstDSI	CCRYGG	1 cut(s)	19
BstKTI	GATC	2 cut(s)	199, 226
BstMBI	GATC	2 cut(s)	196, 223
BstV1I	GCAGC	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	19
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	14
CseI	GACGC	2 cut(s)	80, 177
Csp6I	GTAC	1 cut(s)	206
CviAII	CATG	2 cut(s)	20, 42
CviJI	RGCY	6 cut(s)	18, 69, 114, 120, 221, 259
CviKI_1	RGCY	6 cut(s)	18, 69, 114, 120, 221, 259
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	3 cut(s)	115, 121, 243
DpnI	GATC	2 cut(s)	198, 225
DpnII	GATC	2 cut(s)	196, 223
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	19
FaeI	CATG	2 cut(s)	23, 45
FaiI	YATR	4 cut(s)	21, 43, 65, 268
FatI	CATG	2 cut(s)	19, 41
Fnu4HI	GCNGC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	1 cut(s)	51
GsuI	CTGGAG	1 cut(s)	213
HgaI	GACGC	2 cut(s)	80, 177
Hin1II	CATG	2 cut(s)	23, 45
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	2 cut(s)	192, 254
HpyCH4V	TGCA	2 cut(s)	12, 53
HpyF3I	CTNAG	3 cut(s)	115, 121, 243
Hsp92II	CATG	2 cut(s)	23, 45
Kzo9I	GATC	2 cut(s)	196, 223
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	3 cut(s)	177, 222, 239
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	230
MalI	GATC	2 cut(s)	198, 225
MboI	GATC	2 cut(s)	196, 223
MboII	GAAGA	1 cut(s)	224
MfeI	CAATTG	1 cut(s)	54
MluCI	AATT	1 cut(s)	54
MnlI	CCTC	4 cut(s)	26, 118, 208, 237
MslI	CAYNNNNRTG	1 cut(s)	75
MunI	CAATTG	1 cut(s)	54
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	2 cut(s)	196, 223
NlaIII	CATG	2 cut(s)	23, 45
PkrI	GCNGC	1 cut(s)	52
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
RseI	CAYNNNNRTG	1 cut(s)	75
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	196, 223
SetI	ASST	7 cut(s)	37, 129, 211, 219, 223, 235, 261
SfaNI	GCATC	1 cut(s)	67
SgeI	CNNG	7 cut(s)	32, 54, 204, 212, 221, 242, 266
SmiMI	CAYNNNNRTG	1 cut(s)	75
Sse9I	AATT	1 cut(s)	54
SspMI	CTAG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	19
TasI	AATT	1 cut(s)	54
TscAI	CASTG	1 cut(s)	14
TseI	GCWGC	1 cut(s)	50
TspRI	CASTG	1 cut(s)	14
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.