Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003964

Physical Location & Seq

Genomic Coordinates Reverse (-)

12427373 .. 12428155

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG145200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGAGTGAGTTGGGTTCATATTCTACCTGGAACATAACAGGAACTTACAGAGGTGCGCCATGTGTTGCTGCAATTGAGAATATGAGCCATTTTGATGCTGATGGGAAGCGTCATTACCCATTTGGTAAAGGCTTAGGCTCAGAGGTTGTAAAGCAGTTTGGTATCCCTAATCTATTTGATTTTCCCATTAGACCAACTCTATCTGCGTCTGGAGATCGTGGAGTACCTGAAGCAAAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0051186 GO:0051536 GO:0051540 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF971 FeS_assembly_P ParA

Protein Analysis

80

Amino Acids

8.71

Weight (kDa)

6.71

Isoelectric Point (pI)

50.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ParA	PF10609	19 - 77	4.8e-07	NUBPL iron-transfer P-loop NTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003964)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0332011 RchiOBHm_Chr2g0090851 RchiOBHm_Chr2g0147101 RchiOBHm_Chr3g0496131
rosa_multiflora	Rmu_sc0002882.1_g000018 Rmu_sc0030390.1_g000001
rosa_samantha	Rh1DG125700 Rh2AG358500 Rh2AG463300 Rh2CG450100 Rh2DG320200 Rh3AG171400 Rh3AG326900 Rh3BG097800 Rh3BG144000 Rh3BG197000 Rh3CG145400 Rh3CG187900 Rh3DG145200 Rh4AG145300 Rh4AG256400 Rh4BG261800 Rh4DG132600 Rh5AG231200 Rh5AG444900 Rh5BG346900 Rh5CG263900 Rh5CG479600 Rh5DG360000 Rh6CG162300 Rh6DG153900 Rh7AG437000 Rh7BG440000
rosa_wichuraiana	Rw5G029020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	225
AjnI	CCWGG	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	58
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	28
BciVI	GTATCC	1 cut(s)	173
BfuI	GTATCC	1 cut(s)	173
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme1390I	CCNGG	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	28
BmsI	GCATC	1 cut(s)	85
BpmI	CTGGAG	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	214
BspCNI	CTCAG	1 cut(s)	152
BssMI	GATC	1 cut(s)	214
Bst2UI	CCWGG	1 cut(s)	28
BstDEI	CTNAG	2 cut(s)	133, 139
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstNI	CCWGG	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	55
BsuI	GTATCC	1 cut(s)	173
CfoI	GCGC	1 cut(s)	58
CseI	GACGC	2 cut(s)	98, 195
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	1 cut(s)	60
CviJI	RGCY	3 cut(s)	87, 132, 138
CviKI_1	RGCY	3 cut(s)	87, 132, 138
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	2 cut(s)	133, 139
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	26
FaeI	CATG	1 cut(s)	63
FaiI	YATR	4 cut(s)	19, 35, 61, 83
FatI	CATG	1 cut(s)	59
Fnu4HI	GCNGC	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	69
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	69
GsuI	CTGGAG	1 cut(s)	231
HgaI	GACGC	2 cut(s)	98, 195
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	1 cut(s)	63
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	1 cut(s)	210
HpyCH4V	TGCA	1 cut(s)	71
HpyF3I	CTNAG	2 cut(s)	133, 139
Hsp92II	CATG	1 cut(s)	63
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	1 cut(s)	214
LpnPI	CCDG	4 cut(s)	13, 24, 40, 195
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	1 cut(s)	85
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MfeI	CAATTG	1 cut(s)	72
MluCI	AATT	1 cut(s)	72
MnlI	CCTC	2 cut(s)	44, 136
MslI	CAYNNNNRTG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	28
MunI	CAATTG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	28
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	93
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	1 cut(s)	214
ScrFI	CCNGG	1 cut(s)	28
SetI	ASST	4 cut(s)	29, 55, 147, 229
SfaNI	GCATC	1 cut(s)	85
SgeI	CNNG	7 cut(s)	39, 40, 51, 72, 222, 230, 239
SmiMI	CAYNNNNRTG	1 cut(s)	93
Sse9I	AATT	1 cut(s)	72
SspI	AATATT	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	26
TasI	AATT	1 cut(s)	72
TseI	GCWGC	1 cut(s)	68
TspDTI	ATGAA	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.