Rh5CG263900

Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
28167380 .. 28170661
3282 bp
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UTR
Exon/CDS
Intron
Rh5CG263900.1

Sequence Viewer

Length: 270 bp
ATGGGATTTTTTGATGGATTGCCAGTGTCTCGAGACAAGGAAGATATGCAGAAATCAGATTCTCTGGATAGCTTATTTGGCGACAAAGATGCAAGTGGTGCTCTGGAAGTTTATGATTTTAGCTCAAATTTTGTATTGTGTTTCAGCAACTTGTGGAGGACTACTTCTGAAGAGAAGAGGGAGTTGGAGCGCCTTGAAAAACTATTATATAATTCAGTTCGTCGAGCTGCAGAAGTTCATCGCCAGCCTTTTGTGCCCAAGACCACCTAG

Protein Analysis

89

Amino Acids

10.28

Weight (kDa)

5.1

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 127
AcuI CTGAAG 1 cut(s) 189
AgsI TTSAA 1 cut(s) 197
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AluBI AGCT 3 cut(s) 72, 123, 227
AluI AGCT 3 cut(s) 72, 123, 227
Alw21I GWGCWC 1 cut(s) 103
Alw26I GTCTC 2 cut(s) 27, 33
Ama87I CYCGRG 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 127
AspLEI GCGC 1 cut(s) 192
AvaI CYCGRG 1 cut(s) 30
BaeGI GKGCMC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 103
BbvI GCAGC 1 cut(s) 214
BccI CCATC 1 cut(s) 8
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BcoDI GTCTC 2 cut(s) 27, 33
BfaI CTAG 1 cut(s) 268
BfmI CTRYAG 1 cut(s) 228
BfoI RGCGCY 1 cut(s) 193
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
BmeT110I CYCGRG 1 cut(s) 30
BmsI GCATC 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 258
BseXI GCAGC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 103
BsiHKCI CYCGRG 1 cut(s) 30
BsmAI GTCTC 2 cut(s) 27, 33
BsoBI CYCGRG 1 cut(s) 30
Bsp1286I GDGCHC 2 cut(s) 103, 258
BspMAI CTGCAG 1 cut(s) 232
BsrI ACTGG 1 cut(s) 23
Bst6I CTCTTC 2 cut(s) 165, 170
BstAPI GCANNNNNTGC 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 245
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 1 cut(s) 192
BstMAI GTCTC 2 cut(s) 27, 33
BstMWI GCNNNNNNNGC 3 cut(s) 78, 98, 253
BstSFI CTRYAG 1 cut(s) 228
BstSLI GKGCMC 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 214
BtgZI GCGATG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 245
CfoI GCGC 1 cut(s) 192
CviJI RGCY 4 cut(s) 72, 123, 227, 247
CviKI_1 RGCY 4 cut(s) 72, 123, 227, 247
Eam1104I CTCTTC 2 cut(s) 165, 170
EarI CTCTTC 2 cut(s) 165, 170
Eco57I CTGAAG 1 cut(s) 189
Eco88I CYCGRG 1 cut(s) 30
FaiI YATR 4 cut(s) 47, 114, 208, 210
Fnu4HI GCNGC 1 cut(s) 228
Fsp4HI GCNGC 1 cut(s) 228
FspBI CTAG 1 cut(s) 268
GlaI GCGC 1 cut(s) 191
GluI GCNGC 1 cut(s) 228
HaeII RGCGCY 1 cut(s) 193
HhaI GCGC 1 cut(s) 192
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HinfI GANTC 1 cut(s) 59
Hpy188I TCNGA 2 cut(s) 58, 169
Hpy188III TCNNGA 4 cut(s) 30, 32, 65, 104
Hpy99I CGWCG 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 49, 92, 230
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 98, 253
HspAI GCGC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 4 cut(s) 36, 50, 89, 257
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 1 cut(s) 79
MaeI CTAG 1 cut(s) 268
MboII GAAGA 3 cut(s) 53, 182, 187
MhlI GDGCHC 2 cut(s) 103, 258
MluCI AATT 2 cut(s) 127, 211
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 2 cut(s) 150, 171
MwoI GCNNNNNNNGC 3 cut(s) 78, 98, 253
PaeR7I CTCGAG 1 cut(s) 30
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 1 cut(s) 229
PstI CTGCAG 1 cut(s) 232
SatI GCNGC 1 cut(s) 228
SduI GDGCHC 2 cut(s) 103, 258
SetI ASST 4 cut(s) 74, 125, 229, 269
SfaNI GCATC 1 cut(s) 79
SfcI CTRYAG 1 cut(s) 228
Sfr274I CTCGAG 1 cut(s) 30
SlaI CTCGAG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
Sse9I AATT 2 cut(s) 127, 211
SspMI CTAG 1 cut(s) 268
TaqI TCGA 2 cut(s) 31, 223
TasI AATT 2 cut(s) 127, 211
TfiI GAWTC 1 cut(s) 59
TscAI CASTG 1 cut(s) 30
TseI GCWGC 1 cut(s) 227
TspDTI ATGAA 1 cut(s) 227
TspRI CASTG 1 cut(s) 30
XapI RAATTY 1 cut(s) 127
XhoI CTCGAG 1 cut(s) 30
XspI CTAG 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.