RchiOBHm_Chr4g0406751

HB1, ASXL, restriction endonuclease HTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0010623
Physical Location & Seq
Forward (+)
28513782 .. 28514462
681 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37803

Sequence Viewer

Length: 177 bp
ATGAAAAAGGACGTACGTGTTACTAGCAATTTTTCTTTTCCTGATAGCGTTGTTGTGCTTCAATGGATACCACTTACAACAGTTGCTGTGGCTCTTAGGCTCATGGAGTTTGATATATGTGGCCATCGTAAACATGCTACAGAAGAAGCTGGAGACTCAGAAGAACAAGGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001077 GO:0001228 GO:0001525 GO:0001568 GO:0001944 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0035239 GO:0035295 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048514 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990837 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

58

Amino Acids

6.5

Weight (kDa)

5.11

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 121
AfaI GTAC 1 cut(s) 15
AflIII ACRYGT 1 cut(s) 16
AgsI TTSAA 1 cut(s) 62
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 147
AlwNI CAGNNNCTG 1 cut(s) 86
AoxI GGCC 1 cut(s) 121
BalI TGGCCA 1 cut(s) 123
BccI CCATC 1 cut(s) 132
BciVI GTATCC 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 138
BfuI GTATCC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 171
BsaAI YACGTR 1 cut(s) 17
BseMII CTCAG 1 cut(s) 171
BshFI GGCC 1 cut(s) 123
BsiWI CGTACG 1 cut(s) 13
BsmAI GTCTC 1 cut(s) 147
BsnI GGCC 1 cut(s) 123
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 82
BstBAI YACGTR 1 cut(s) 17
BstDEI CTNAG 2 cut(s) 95, 157
BstMAI GTCTC 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 137
BstSFI CTRYAG 1 cut(s) 138
BsuI GTATCC 1 cut(s) 60
BsuRI GGCC 1 cut(s) 123
CaiI CAGNNNCTG 1 cut(s) 86
Csp6I GTAC 1 cut(s) 14
CviAII CATG 2 cut(s) 103, 134
CviJI RGCY 4 cut(s) 92, 100, 123, 149
CviKI_1 RGCY 4 cut(s) 92, 100, 123, 149
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 2 cut(s) 95, 157
EaeI YGGCCR 1 cut(s) 121
FaeI CATG 2 cut(s) 106, 137
FaiI YATR 4 cut(s) 104, 116, 118, 135
FatI CATG 2 cut(s) 102, 133
FspBI CTAG 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 171
HaeIII GGCC 1 cut(s) 123
Hin1II CATG 2 cut(s) 106, 137
HinfI GANTC 2 cut(s) 155, 171
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 2 cut(s) 160, 176
Hpy188III TCNNGA 1 cut(s) 41
Hpy8I GTNNAC 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4IV ACGT 2 cut(s) 12, 16
HpyF3I CTNAG 2 cut(s) 95, 157
HpySE526I ACGT 2 cut(s) 12, 16
Hsp92II CATG 2 cut(s) 106, 137
LpnPI CCDG 2 cut(s) 54, 135
MaeI CTAG 1 cut(s) 24
MaeII ACGT 2 cut(s) 12, 16
MaeIII GTNAC 1 cut(s) 19
MboII GAAGA 2 cut(s) 155, 173
MlsI TGGCCA 1 cut(s) 123
MluCI AATT 1 cut(s) 28
MluNI TGGCCA 1 cut(s) 123
MlyI GAGTC 1 cut(s) 149
Mox20I TGGCCA 1 cut(s) 123
MscI TGGCCA 1 cut(s) 123
Msp20I TGGCCA 1 cut(s) 123
NlaIII CATG 2 cut(s) 106, 137
NspI RCATGY 1 cut(s) 137
PfeI GAWTC 1 cut(s) 171
Pfl23II CGTACG 1 cut(s) 13
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Ppu21I YACGTR 1 cut(s) 17
PspLI CGTACG 1 cut(s) 13
PstNI CAGNNNCTG 1 cut(s) 86
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
SchI GAGTC 1 cut(s) 149
SetI ASST 3 cut(s) 15, 19, 151
SfcI CTRYAG 1 cut(s) 138
SgeI CNNG 6 cut(s) 29, 36, 53, 115, 146, 162
Sse9I AATT 1 cut(s) 28
SspMI CTAG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 82
TaiI ACGT 2 cut(s) 15, 19
TasI AATT 1 cut(s) 28
TfiI GAWTC 1 cut(s) 171
TspDTI ATGAA 1 cut(s) 17
XceI RCATGY 1 cut(s) 137
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.