Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000174.1

Orthogroup ID

OG0010623

Physical Location & Seq

Genomic Coordinates Reverse (-)

149715 .. 152338

Gene Structure 2624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000174.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atgtactcggatgttgcaactatgagaaaagctagcttaaggcgtgaggcctcaagaattgctggtgaagagggatttagagctttctggaaaggaaatctggttatgattgctcatcgtcttcctcattcttctgtcaatttctattcatatgagcagtataaaaagattctgcatacagttccgggactggaaaattccagggataacatgagtatagacatttgtgtacattttgtgggtggaggtttggcaggaataacagctgcaacagccacatatcctttgaatcttgtaaggacatgccttgcagctcagttgactattccattgaaggtaccctgcgcaagtgagattgccaaagtgaaaaagggatctcctgctagcaccagtaacagaggaatctcagggagtaatgtatctgcttcgttcaatgttaaaccaagtgcagttctaccaaaagttacttctatccaaaggagtagtaatgaagttttcccaaagttgtggagttggaaggagatggtacgtagtattgctgatattgataactgtttcatggaccacaactttgtgcaacctttgcttgtggtatttaccagtacttgcgtgcgtctgaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

207

Amino Acids

22.81

Weight (kDa)

9.71

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010623)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406751
rosa_laevigata	RLG00000000934 RLG00000011018 RLG00000017602 RLG00000018634
rosa_multiflora	Rmu_sc0002302.1_g000003 Rmu_sc0002718.1_g000040 Rmu_ssc0000174.1_g000026
rosa_rugosa	Rorug07G0098700
rosa_samantha	Rh2AG218800 Rh2AG478500 Rh2CG220500 Rh2CG464700 Rh2DG224700 Rh3CG286800 Rh3CG326200 Rh5CG443900 Rh5DG264700 Rh5DG264800 Rh7DG256000
rosa_wichuraiana	Rw6G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	346
Acc65I	GGTACC	1 cut(s)	337
AccB1I	GGYRCC	1 cut(s)	337
AclWI	GGATC	1 cut(s)	382
AcsI	RAATTY	1 cut(s)	196
AfaI	GTAC	5 cut(s)	5, 231, 339, 528, 604
AflII	CTTAAG	1 cut(s)	37
AgsI	TTSAA	3 cut(s)	289, 334, 433
AjnI	CCWGG	1 cut(s)	200
AjuI	GAANNNNNNNTTGG	2 cut(s)	451, 483
AluBI	AGCT	5 cut(s)	32, 36, 83, 266, 314
AluI	AGCT	5 cut(s)	32, 36, 83, 266, 314
AlwI	GGATC	1 cut(s)	382
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	2 cut(s)	266, 311
ApoI	RAATTY	1 cut(s)	196
ArsI	GACNNNNNNTTYG	2 cut(s)	554, 586
Asp718I	GGTACC	1 cut(s)	337
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	562
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	77
AsuNHI	GCTAGC	2 cut(s)	32, 383
AvaII	GGWCC	1 cut(s)	562
BanI	GGYRCC	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	253, 323
BccI	CCATC	1 cut(s)	517
BciT130I	CCWGG	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	186
BfaI	CTAG	2 cut(s)	33, 384
BfrI	CTTAAG	1 cut(s)	37
BisI	GCNGC	2 cut(s)	267, 312
BlsI	GCNGC	2 cut(s)	268, 313
BmcAI	AGTACT	1 cut(s)	604
Bme1390I	CCNGG	2 cut(s)	186, 202
Bme18I	GGWCC	1 cut(s)	562
BmgT120I	GGNCC	1 cut(s)	562
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	2 cut(s)	186, 202
BmtI	GCTAGC	2 cut(s)	36, 387
BpiI	GAAGAC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	530
BsaJI	CCNNGG	1 cut(s)	201
Bse1I	ACTGG	3 cut(s)	195, 390, 600
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	16
BseMII	CTCAG	3 cut(s)	329, 420, 608
BseNI	ACTGG	3 cut(s)	195, 390, 600
BseXI	GCAGC	2 cut(s)	253, 323
BsgI	GTGCAG	1 cut(s)	468
BshFI	GGCC	1 cut(s)	50
BshNI	GGYRCC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	50
Bsp1407I	TGTACA	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	374
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	3 cut(s)	328, 419, 609
BspLI	GGNNCC	1 cut(s)	339
BspOI	GCTAGC	2 cut(s)	36, 387
BspPI	GGATC	1 cut(s)	382
BspT107I	GGYRCC	1 cut(s)	337
BspTI	CTTAAG	1 cut(s)	37
BsrGI	TGTACA	1 cut(s)	229
BsrI	ACTGG	3 cut(s)	195, 390, 600
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	1 cut(s)	374
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	2 cut(s)	181, 554
Bst6I	CTCTTC	1 cut(s)	63
BstAFI	CTTAAG	1 cut(s)	37
BstAPI	GCANNNNNTGC	1 cut(s)	583
BstAUI	TGTACA	1 cut(s)	229
BstBAI	YACGTR	1 cut(s)	530
BstC8I	GCNNGC	3 cut(s)	34, 385, 611
BstDEI	CTNAG	3 cut(s)	315, 406, 617
BstF5I	GGATG	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	1 cut(s)	377
BstMBI	GATC	1 cut(s)	374
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 583
BstNI	CCWGG	1 cut(s)	202
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	2 cut(s)	184, 200
BstSNI	TACGTA	1 cut(s)	530
BstV1I	GCAGC	2 cut(s)	253, 323
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	374
BstXI	CCANNNNNNTGG	1 cut(s)	507
BstYI	RGATCY	1 cut(s)	374
BsuRI	GGCC	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	16
Cac8I	GCNNGC	3 cut(s)	34, 385, 611
CfoI	GCGC	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	562
CseI	GACGC	1 cut(s)	602
Csp6I	GTAC	5 cut(s)	4, 230, 338, 527, 603
CviAII	CATG	3 cut(s)	211, 303, 559
CviJI	RGCY	7 cut(s)	32, 36, 50, 83, 266, 275, 314
CviKI_1	RGCY	7 cut(s)	32, 36, 50, 83, 266, 275, 314
CviQI	GTAC	5 cut(s)	4, 230, 338, 527, 603
DdeI	CTNAG	3 cut(s)	315, 406, 617
DpnI	GATC	1 cut(s)	376
DpnII	GATC	1 cut(s)	374
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco105I	TACGTA	1 cut(s)	530
Eco147I	AGGCCT	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	562
EcoRII	CCWGG	1 cut(s)	200
FaeI	CATG	3 cut(s)	214, 306, 562
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	3 cut(s)	210, 302, 558
FauNDI	CATATG	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	267, 312
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	2 cut(s)	267, 312
FspBI	CTAG	2 cut(s)	33, 384
FspI	TGCGCA	1 cut(s)	346
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	2 cut(s)	267, 312
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	185
HgaI	GACGC	1 cut(s)	602
HhaI	GCGC	1 cut(s)	347
Hin1II	CATG	3 cut(s)	214, 306, 562
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HinfI	GANTC	3 cut(s)	169, 289, 402
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	2 cut(s)	230, 321
Hpy188I	TCNGA	2 cut(s)	10, 618
Hpy188III	TCNNGA	2 cut(s)	54, 88
Hpy8I	GTNNAC	2 cut(s)	230, 321
HpyAV	CCTTC	2 cut(s)	328, 511
HpyCH4III	ACNGT	2 cut(s)	181, 554
HpyCH4IV	ACGT	1 cut(s)	529
HpyCH4V	TGCA	6 cut(s)	17, 175, 269, 311, 449, 577
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 583
HpyF3I	CTNAG	3 cut(s)	315, 406, 617
HpySE526I	ACGT	1 cut(s)	529
Hsp92II	CATG	3 cut(s)	214, 306, 562
HspAI	GCGC	1 cut(s)	345
KpnI	GGTACC	1 cut(s)	341
Kzo9I	GATC	1 cut(s)	374
Lsp1109I	GCAGC	2 cut(s)	253, 323
MaeI	CTAG	2 cut(s)	33, 384
MaeII	ACGT	1 cut(s)	529
MaeIII	GTNAC	2 cut(s)	392, 463
MalI	GATC	1 cut(s)	376
MboI	GATC	1 cut(s)	374
MboII	GAAGA	3 cut(s)	80, 113, 123
MflI	RGATCY	1 cut(s)	374
MluCI	AATT	3 cut(s)	57, 139, 196
MmeI	TCCRAC	1 cut(s)	494
MnlI	CCTC	7 cut(s)	40, 61, 64, 135, 239, 392, 612
MseI	TTAA	2 cut(s)	38, 438
MspA1I	CMGCKG	1 cut(s)	266
MspCI	CTTAAG	1 cut(s)	37
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	2 cut(s)	186, 202
MvaI	CCWGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	2 cut(s)	272, 583
NciI	CCSGG	1 cut(s)	186
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	1 cut(s)	374
NheI	GCTAGC	2 cut(s)	32, 383
NlaIII	CATG	3 cut(s)	214, 306, 562
NlaIV	GGNNCC	1 cut(s)	339
NsbI	TGCGCA	1 cut(s)	346
NspI	RCATGY	1 cut(s)	306
PceI	AGGCCT	1 cut(s)	50
PfeI	GAWTC	3 cut(s)	169, 289, 402
PfoI	TCCNGGA	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	268, 313
Ppu21I	YACGTR	1 cut(s)	530
Psp6I	CCWGG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	562
PsuI	RGATCY	1 cut(s)	374
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	5 cut(s)	5, 231, 339, 528, 604
RsaNI	GTAC	5 cut(s)	4, 230, 338, 527, 603
SaqAI	TTAA	2 cut(s)	38, 438
SatI	GCNGC	2 cut(s)	267, 312
Sau3AI	GATC	1 cut(s)	374
Sau96I	GGNCC	1 cut(s)	562
ScaI	AGTACT	1 cut(s)	604
ScrFI	CCNGG	2 cut(s)	186, 202
SinI	GGWCC	1 cut(s)	562
SmlI	CTYRAG	2 cut(s)	37, 52
SmoI	CTYRAG	2 cut(s)	37, 52
SnaBI	TACGTA	1 cut(s)	530
Sse9I	AATT	3 cut(s)	57, 139, 196
SseBI	AGGCCT	1 cut(s)	50
SspMI	CTAG	2 cut(s)	33, 384
StuI	AGGCCT	1 cut(s)	50
StyD4I	CCNGG	2 cut(s)	184, 200
TaaI	ACNGT	2 cut(s)	181, 554
TaiI	ACGT	1 cut(s)	532
TasI	AATT	3 cut(s)	57, 139, 196
TatI	WGTACW	3 cut(s)	3, 229, 602
TfiI	GAWTC	3 cut(s)	169, 289, 402
Tru1I	TTAA	2 cut(s)	38, 438
Tru9I	TTAA	2 cut(s)	38, 438
TseI	GCWGC	2 cut(s)	266, 311
TspDTI	ATGAA	3 cut(s)	138, 504, 547
Vha464I	CTTAAG	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	562
XapI	RAATTY	1 cut(s)	196
XceI	RCATGY	1 cut(s)	306
XspI	CTAG	2 cut(s)	33, 384
ZrmI	AGTACT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.