Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010623

Physical Location & Seq

Genomic Coordinates Forward (+)

33086290 .. 33087622

Gene Structure 1333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018634

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGACTATTCCATTGAAGGTACCCTGCGCAAGTAAGATTGCCAAAGTGAAAAAGGGATCTCCTGCTAGCACCAGTAACAGAGGAATCTCAGGGAGTAATGTATCTGCTTCGTTCAATGTTAAACCAAGTGCAGTTCTACCAAAAGTTACTTCTATCCAAGGGAGTAGTAATGAAGTTTTCCCAAAGTTGTGGAGTTGGAAGGAGATGGTACGTAGTATTGCTGATATTGATAACCGTTTTAGGGACCACAGCTTTGTTCAACCTTTGCTTGTGGTATTTACCAGTACTTGCGTGCGTCTGAGTGTTGTTGTGCTTCCATGGATACCACTTACAACAGTTGTTGTGGCTCTTAGGCTCATGGAGTTTGATATATGTGGCCATCGTAAACATGCTACAGAAGAAGCTGGAGACTCCGAAGAACAAGGAATCTGGGAATTTTATAGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006996 GO:0007049 GO:0007135 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051321 GO:0051445 GO:0051704 GO:0051726 GO:0061983 GO:0065007 GO:0071840 GO:0140013 GO:1903046 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

150

Amino Acids

16.45

Weight (kDa)

9.3

Isoelectric Point (pI)

32.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010623)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406751
rosa_laevigata	RLG00000000934 RLG00000011018 RLG00000017602 RLG00000018634
rosa_multiflora	Rmu_sc0002302.1_g000003 Rmu_sc0002718.1_g000040 Rmu_ssc0000174.1_g000026
rosa_rugosa	Rorug07G0098700
rosa_samantha	Rh2AG218800 Rh2AG478500 Rh2CG220500 Rh2CG464700 Rh2DG224700 Rh3CG286800 Rh3CG326200 Rh5CG443900 Rh5DG264700 Rh5DG264800 Rh7DG256000
rosa_wichuraiana	Rw6G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	28
Acc65I	GGTACC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	19
AclWI	GGATC	1 cut(s)	64
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	1 cut(s)	434
AfaI	GTAC	3 cut(s)	21, 210, 286
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	3 cut(s)	16, 115, 260
AjuI	GAANNNNNNNTTGG	2 cut(s)	133, 165
AluBI	AGCT	2 cut(s)	252, 404
AluI	AGCT	2 cut(s)	252, 404
Alw26I	GTCTC	1 cut(s)	402
AlwI	GGATC	1 cut(s)	64
AoxI	GGCC	1 cut(s)	376
ApoI	RAATTY	1 cut(s)	434
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
Asp718I	GGTACC	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	244
AsuNHI	GCTAGC	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	378
BanI	GGYRCC	1 cut(s)	19
BccI	CCATC	2 cut(s)	199, 387
BciVI	GTATCC	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	402
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	393
BfuI	GTATCC	1 cut(s)	315
BmcAI	AGTACT	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	2 cut(s)	21, 245
BmtI	GCTAGC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	426
BsaAI	YACGTR	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	157, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse1I	ACTGG	2 cut(s)	72, 282
BseDI	CCNNGG	2 cut(s)	157, 317
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMII	CTCAG	2 cut(s)	102, 290
BseNI	ACTGG	2 cut(s)	72, 282
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	378
BshNI	GGYRCC	1 cut(s)	19
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	1 cut(s)	402
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	378
Bsp143I	GATC	1 cut(s)	56
Bsp19I	CCATGG	1 cut(s)	317
BspANI	GGCC	1 cut(s)	378
BspCNI	CTCAG	2 cut(s)	101, 291
BspLI	GGNNCC	2 cut(s)	21, 245
BspOI	GCTAGC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	64
BspT107I	GGYRCC	1 cut(s)	19
BsrI	ACTGG	2 cut(s)	72, 282
BssECI	CCNNGG	2 cut(s)	157, 317
BssMI	GATC	1 cut(s)	56
BssT1I	CCWWGG	2 cut(s)	157, 317
Bst4CI	ACNGT	2 cut(s)	236, 337
BstBAI	YACGTR	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	67, 293
BstDEI	CTNAG	3 cut(s)	88, 299, 350
BstDSI	CCRYGG	1 cut(s)	317
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	1 cut(s)	59
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	392
BstSFI	CTRYAG	1 cut(s)	393
BstSNI	TACGTA	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	56
BstXI	CCANNNNNNTGG	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	56
BsuI	GTATCC	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	378
BtgI	CCRYGG	1 cut(s)	317
Cac8I	GCNNGC	2 cut(s)	67, 293
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	244
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	3 cut(s)	20, 209, 285
CviAII	CATG	3 cut(s)	318, 358, 389
CviJI	RGCY	5 cut(s)	252, 347, 355, 378, 404
CviKI_1	RGCY	5 cut(s)	252, 347, 355, 378, 404
CviQI	GTAC	3 cut(s)	20, 209, 285
DdeI	CTNAG	3 cut(s)	88, 299, 350
DpnI	GATC	1 cut(s)	58
DpnII	GATC	1 cut(s)	56
EaeI	YGGCCR	1 cut(s)	376
Eco105I	TACGTA	1 cut(s)	212
Eco130I	CCWWGG	2 cut(s)	157, 317
Eco47I	GGWCC	1 cut(s)	244
EcoT14I	CCWWGG	2 cut(s)	157, 317
ErhI	CCWWGG	2 cut(s)	157, 317
FaeI	CATG	3 cut(s)	321, 361, 392
FaiI	YATR	6 cut(s)	319, 359, 371, 373, 390, 441
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	3 cut(s)	317, 357, 388
FspBI	CTAG	1 cut(s)	66
FspI	TGCGCA	1 cut(s)	28
GlaI	GCGC	1 cut(s)	28
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	378
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	3 cut(s)	321, 361, 392
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HinfI	GANTC	3 cut(s)	84, 410, 426
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	2 cut(s)	300, 415
Hpy8I	GTNNAC	1 cut(s)	386
HpyAV	CCTTC	2 cut(s)	10, 193
HpyCH4III	ACNGT	2 cut(s)	236, 337
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	1 cut(s)	131
HpyF3I	CTNAG	3 cut(s)	88, 299, 350
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	3 cut(s)	321, 361, 392
HspAI	GCGC	1 cut(s)	27
KpnI	GGTACC	1 cut(s)	23
Kzo9I	GATC	1 cut(s)	56
LpnPI	CCDG	7 cut(s)	37, 75, 75, 85, 295, 390, 415
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	2 cut(s)	74, 145
MalI	GATC	1 cut(s)	58
MboI	GATC	1 cut(s)	56
MboII	GAAGA	2 cut(s)	410, 428
MflI	RGATCY	1 cut(s)	56
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	1 cut(s)	434
MluNI	TGGCCA	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	1 cut(s)	74
Mox20I	TGGCCA	1 cut(s)	378
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	1 cut(s)	120
Msp20I	TGGCCA	1 cut(s)	378
NcoI	CCATGG	1 cut(s)	317
NdeII	GATC	1 cut(s)	56
NheI	GCTAGC	1 cut(s)	65
NlaIII	CATG	3 cut(s)	321, 361, 392
NlaIV	GGNNCC	2 cut(s)	21, 245
NsbI	TGCGCA	1 cut(s)	28
NspI	RCATGY	1 cut(s)	392
PfeI	GAWTC	2 cut(s)	84, 426
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
Ppu21I	YACGTR	1 cut(s)	212
PspN4I	GGNNCC	2 cut(s)	21, 245
PspPI	GGNCC	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	56
RsaI	GTAC	3 cut(s)	21, 210, 286
RsaNI	GTAC	3 cut(s)	20, 209, 285
SaqAI	TTAA	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	56
Sau96I	GGNCC	1 cut(s)	244
ScaI	AGTACT	1 cut(s)	286
SchI	GAGTC	1 cut(s)	404
SetI	ASST	5 cut(s)	21, 214, 254, 265, 406
SfcI	CTRYAG	1 cut(s)	393
SinI	GGWCC	1 cut(s)	244
SnaBI	TACGTA	1 cut(s)	212
Sse9I	AATT	1 cut(s)	434
SspMI	CTAG	1 cut(s)	66
StyI	CCWWGG	2 cut(s)	157, 317
TaaI	ACNGT	2 cut(s)	236, 337
TaiI	ACGT	1 cut(s)	214
TasI	AATT	1 cut(s)	434
TatI	WGTACW	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	84, 426
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TspDTI	ATGAA	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	244
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	1 cut(s)	392
XspI	CTAG	1 cut(s)	66
ZrmI	AGTACT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.