Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010623

Physical Location & Seq

Genomic Coordinates Forward (+)

26755211 .. 26759750

Gene Structure 4540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG256000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGATGCGAAGCTAAACGAGCTGACTCACAACTTTAGGTGTTTCAAAGCAGTGCTGATCCGTAATGATTTTGCACTTAGGTTGAATCGTAAAGTGTCGCAGCTTCTCGCCAGAGGCGTGGCCGGAGCTCTGGCTAAGACTTGTACTGCTCCTCTTGCTCGGCTTACTATACTCTTTCAGATACAAGGCATGTACTCGGATGTTGCAACTATGAGAAAAGCTAGATTAAGGCGTGAGGCCTCAAGAATTGCTGGTGAAGAGGGATTTAGAGCTTTCTGGAAAGGAAATCTGGTTATGATTGCTCATCGTCTTCCTTATTCTTCTGTCAATTTCTATTCATATGAGCAGTATAAAAAGATTCTGCATACAGTTCCGGGACTGGAAAATTCCAGGGATAACATGAGTATAGACATTTGTGTACATTTTGTGGGTGGAGGTTTGGCAGGAATAACAGCTGCAACAGCCACATATCCTTTGGATCTTGTAAGGACACGCCTTGCAGCTCAGGTTCTGGCATCGCTGGACAGTGCCATAAAGATAGAATATTTATCTTCAAACTTTGAGACTACCGGTGAGCTGCTATATTCCTCAAATGAAAAAGGATTCGTGTTACTAGCAATTTTTCTTTTCCTGATAGCGTTGTTGTGCTTCCATGGATACCACTTACAACAGTTGTTGTGGCTCTTAGGCTCATTGAGTTTGATATATGTGGCCATCGTAAACATGCTACAGAAGAAGCTGGAGACTCAGAAGAACAAGGAATCTGGGAATTTTATAGTAAGTAATATCATAATATCATATAATTTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

270

Amino Acids

30.32

Weight (kDa)

9.57

Isoelectric Point (pI)

29.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	32 - 123	9.7e-17	Mitochondrial carrier protein
Mito_carr	PF00153	139 - 174	2e-07	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010623)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406751
rosa_laevigata	RLG00000000934 RLG00000011018 RLG00000017602 RLG00000018634
rosa_multiflora	Rmu_sc0002302.1_g000003 Rmu_sc0002718.1_g000040 Rmu_ssc0000174.1_g000026
rosa_rugosa	Rorug07G0098700
rosa_samantha	Rh2AG218800 Rh2AG478500 Rh2CG220500 Rh2CG464700 Rh2DG224700 Rh3CG286800 Rh3CG326200 Rh5CG443900 Rh5DG264700 Rh5DG264800 Rh7DG256000
rosa_wichuraiana	Rw6G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	52, 486
AcoI	YGGCCR	2 cut(s)	120, 711
AcsI	RAATTY	2 cut(s)	385, 769
AfaI	GTAC	3 cut(s)	145, 194, 420
AgeI	ACCGGT	1 cut(s)	569
AgsI	TTSAA	3 cut(s)	46, 85, 555
AjnI	CCWGG	1 cut(s)	389
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	2 cut(s)	557, 737
AlwI	GGATC	2 cut(s)	52, 486
AlwNI	CAGNNNCTG	1 cut(s)	511
AoxI	GGCC	3 cut(s)	120, 237, 711
ApeKI	GCWGC	4 cut(s)	100, 455, 500, 577
ApoI	RAATTY	2 cut(s)	385, 769
AsiGI	ACCGGT	1 cut(s)	569
AsuC2I	CCSGG	1 cut(s)	375
AsuHPI	GGTGA	2 cut(s)	266, 584
BalI	TGGCCA	1 cut(s)	713
BanII	GRGCYC	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	4 cut(s)	112, 442, 512, 564
BccI	CCATC	1 cut(s)	722
BciT130I	CCWGG	1 cut(s)	391
BciVI	GTATCC	1 cut(s)	650
BcnI	CCSGG	1 cut(s)	375
BcoDI	GTCTC	2 cut(s)	557, 737
BfaI	CTAG	2 cut(s)	222, 614
BfmI	CTRYAG	1 cut(s)	728
BfuI	GTATCC	1 cut(s)	650
BisI	GCNGC	4 cut(s)	101, 456, 501, 578
BlsI	GCNGC	4 cut(s)	102, 457, 502, 579
Bme1390I	CCNGG	2 cut(s)	375, 391
BmrFI	CCNGG	2 cut(s)	375, 391
BmsI	GCATC	1 cut(s)	524
BpiI	GAAGAC	1 cut(s)	302
BpmI	CTGGAG	1 cut(s)	761
Bpu10I	CCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	226
BpuMI	CCSGG	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	390, 652
BsaWI	WCCGGW	1 cut(s)	569
Bse118I	RCCGGY	1 cut(s)	569
Bse1I	ACTGG	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	2 cut(s)	390, 652
BseGI	GGATG	2 cut(s)	10, 205
BseMII	CTCAG	2 cut(s)	518, 761
BseNI	ACTGG	1 cut(s)	384
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	4 cut(s)	112, 442, 512, 564
BshFI	GGCC	3 cut(s)	122, 239, 713
BshTI	ACCGGT	1 cut(s)	569
BsiHKAI	GWGCWC	1 cut(s)	130
BsiSI	CCGG	3 cut(s)	123, 374, 570
BslFI	GGGAC	1 cut(s)	390
BsmAI	GTCTC	2 cut(s)	557, 737
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	3 cut(s)	122, 239, 713
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp1407I	TGTACA	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	57, 478
Bsp19I	CCATGG	1 cut(s)	652
BspANI	GGCC	3 cut(s)	122, 239, 713
BspCNI	CTCAG	2 cut(s)	517, 760
BspPI	GGATC	2 cut(s)	52, 486
BsrFI	RCCGGY	1 cut(s)	569
BsrGI	TGTACA	1 cut(s)	418
BsrI	ACTGG	1 cut(s)	384
BssAI	RCCGGY	1 cut(s)	569
BssECI	CCNNGG	2 cut(s)	390, 652
BssMI	GATC	2 cut(s)	57, 478
BssT1I	CCWWGG	1 cut(s)	652
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	3 cut(s)	370, 527, 672
Bst6I	CTCTTC	1 cut(s)	252
BstAUI	TGTACA	1 cut(s)	418
BstDEI	CTNAG	5 cut(s)	77, 135, 504, 685, 747
BstDSI	CCRYGG	1 cut(s)	652
BstF5I	GGATG	2 cut(s)	10, 205
BstKTI	GATC	2 cut(s)	60, 481
BstMAI	GTCTC	2 cut(s)	557, 737
BstMBI	GATC	2 cut(s)	57, 478
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 155, 461
BstNI	CCWGG	1 cut(s)	391
BstNSI	RCATGY	2 cut(s)	193, 727
BstSCI	CCNGG	2 cut(s)	373, 389
BstSFI	CTRYAG	1 cut(s)	728
BstV1I	GCAGC	4 cut(s)	112, 442, 512, 564
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	478
BstXI	CCANNNNNNTGG	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	478
BsuI	GTATCC	1 cut(s)	650
BsuRI	GGCC	3 cut(s)	122, 239, 713
BtgI	CCRYGG	1 cut(s)	652
BtgZI	GCGATG	1 cut(s)	501
BtsCI	GGATG	2 cut(s)	10, 205
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	57, 532
CaiI	CAGNNNCTG	1 cut(s)	511
Cfr10I	RCCGGY	1 cut(s)	569
Csp6I	GTAC	3 cut(s)	144, 193, 419
CspAI	ACCGGT	1 cut(s)	569
CviAII	CATG	4 cut(s)	190, 400, 653, 724
CviQI	GTAC	3 cut(s)	144, 193, 419
DdeI	CTNAG	5 cut(s)	77, 135, 504, 685, 747
DpnI	GATC	2 cut(s)	59, 480
DpnII	GATC	2 cut(s)	57, 478
EaeI	YGGCCR	2 cut(s)	120, 711
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Ecl136II	GAGCTC	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	652
Eco147I	AGGCCT	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	652
EcoT38I	GRGCYC	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	652
FaeI	CATG	4 cut(s)	193, 403, 656, 727
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	4 cut(s)	189, 399, 652, 723
FauNDI	CATATG	1 cut(s)	340
Fnu4HI	GCNGC	4 cut(s)	101, 456, 501, 578
FokI	GGATG	2 cut(s)	17, 212
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	4 cut(s)	101, 456, 501, 578
FspBI	CTAG	2 cut(s)	222, 614
GluI	GCNGC	4 cut(s)	101, 456, 501, 578
GsuI	CTGGAG	1 cut(s)	761
HaeIII	GGCC	3 cut(s)	122, 239, 713
HapII	CCGG	3 cut(s)	123, 374, 570
Hin1II	CATG	4 cut(s)	193, 403, 656, 727
HinfI	GANTC	6 cut(s)	25, 85, 358, 603, 745, 761
HpaII	CCGG	3 cut(s)	123, 374, 570
HphI	GGTGA	2 cut(s)	266, 584
Hpy166II	GTNNAC	2 cut(s)	419, 721
Hpy188I	TCNGA	3 cut(s)	180, 199, 750
Hpy188III	TCNNGA	3 cut(s)	243, 277, 631
Hpy8I	GTNNAC	2 cut(s)	419, 721
HpyCH4III	ACNGT	3 cut(s)	370, 527, 672
HpyCH4V	TGCA	5 cut(s)	74, 206, 364, 458, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 155, 461
HpyF3I	CTNAG	5 cut(s)	77, 135, 504, 685, 747
Hsp92II	CATG	4 cut(s)	193, 403, 656, 727
Kzo9I	GATC	2 cut(s)	57, 478
LmnI	GCTCC	2 cut(s)	125, 154
Lsp1109I	GCAGC	4 cut(s)	112, 442, 512, 564
LweI	GCATC	1 cut(s)	524
MaeI	CTAG	2 cut(s)	222, 614
MaeIII	GTNAC	1 cut(s)	609
MalI	GATC	2 cut(s)	59, 480
MboI	GATC	2 cut(s)	57, 478
MboII	GAAGA	6 cut(s)	269, 302, 312, 543, 745, 763
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	1 cut(s)	130
MlsI	TGGCCA	1 cut(s)	713
MluCI	AATT	6 cut(s)	246, 328, 385, 618, 769, 802
MluNI	TGGCCA	1 cut(s)	713
MlyI	GAGTC	2 cut(s)	19, 739
MnlI	CCTC	7 cut(s)	107, 162, 229, 250, 253, 428, 598
Mox20I	TGGCCA	1 cut(s)	713
MscI	TGGCCA	1 cut(s)	713
MseI	TTAA	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	713
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	3 cut(s)	123, 374, 570
MspR9I	CCNGG	2 cut(s)	375, 391
MvaI	CCWGG	1 cut(s)	391
MwoI	GCNNNNNNNGC	3 cut(s)	19, 155, 461
NciI	CCSGG	1 cut(s)	375
NcoI	CCATGG	1 cut(s)	652
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	2 cut(s)	57, 478
NlaIII	CATG	4 cut(s)	193, 403, 656, 727
NmeAIII	GCCGAG	1 cut(s)	139
NspI	RCATGY	2 cut(s)	193, 727
PceI	AGGCCT	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	4 cut(s)	85, 358, 603, 761
PfoI	TCCNGGA	1 cut(s)	373
PinAI	ACCGGT	1 cut(s)	569
PkrI	GCNGC	4 cut(s)	102, 457, 502, 579
PleI	GAGTC	2 cut(s)	19, 739
PpsI	GAGTC	2 cut(s)	19, 739
Psp124BI	GAGCTC	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	389
PstNI	CAGNNNCTG	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	478
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	3 cut(s)	145, 194, 420
RsaNI	GTAC	3 cut(s)	144, 193, 419
SacI	GAGCTC	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	4 cut(s)	101, 456, 501, 578
Sau3AI	GATC	2 cut(s)	57, 478
SchI	GAGTC	2 cut(s)	19, 739
ScrFI	CCNGG	2 cut(s)	375, 391
SduI	GDGCHC	1 cut(s)	130
SfaNI	GCATC	1 cut(s)	524
SfcI	CTRYAG	1 cut(s)	728
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
Sse9I	AATT	6 cut(s)	246, 328, 385, 618, 769, 802
SseBI	AGGCCT	1 cut(s)	239
SspI	AATATT	1 cut(s)	545
SspMI	CTAG	2 cut(s)	222, 614
SstI	GAGCTC	1 cut(s)	130
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	373, 389
StyI	CCWWGG	1 cut(s)	652
TaaI	ACNGT	3 cut(s)	370, 527, 672
TasI	AATT	6 cut(s)	246, 328, 385, 618, 769, 802
TatI	WGTACW	3 cut(s)	143, 192, 418
TfiI	GAWTC	4 cut(s)	85, 358, 603, 761
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TscAI	CASTG	2 cut(s)	57, 532
TseI	GCWGC	4 cut(s)	100, 455, 500, 577
TspDTI	ATGAA	2 cut(s)	327, 609
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	2 cut(s)	57, 532
XapI	RAATTY	2 cut(s)	385, 769
XceI	RCATGY	2 cut(s)	193, 727
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XspI	CTAG	2 cut(s)	222, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.