Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0010623

Physical Location & Seq

Genomic Coordinates Forward (+)

48101748 .. 48102280

Gene Structure 533 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G024920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGGTAGTGAAAATTGGGTGTGTCTGATTTTGGTAAGAATTGCTTTATTGAGAATTATCTTATCTTTTCAGATACAAGGCATGCACTCGGATGTTGCAACTATGAGAAAAGCTAGCTTATGGCGTGAGGCCTCAAGAATTGCTGGTGAAGAGGGATTTAGAGCTTTCTGGAAAGGAAATCTGGTTACGATTGCTCATCGTCTTCCTTATTCTTCTGTCAATTTCTATTCATATGAGCAGTATAAAAAGATTCTGCATACAGTTCCGAGACTGGAAAATTCCAGGGATAACATGAGTACAGACATTTGTGTACATTTTGTGGGTGGAGGTTTGGCAGGAATAACAGCTGCAACAACCACATATCCTTTGGATCTTGTAAGGACACGCCTTGCAGCTCAGGTAAGATCAGATGGTTGGGAGGCAATCTTTGTTTTCTTTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

147

Amino Acids

16.72

Weight (kDa)

9.3

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	26 - 87	2.6e-11	Mitochondrial carrier protein
Mito_carr	PF00153	103 - 137	9.2e-08	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010623)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406751
rosa_laevigata	RLG00000000934 RLG00000011018 RLG00000017602 RLG00000018634
rosa_multiflora	Rmu_sc0002302.1_g000003 Rmu_sc0002718.1_g000040 Rmu_ssc0000174.1_g000026
rosa_rugosa	Rorug07G0098700
rosa_samantha	Rh2AG218800 Rh2AG478500 Rh2CG220500 Rh2CG464700 Rh2DG224700 Rh3CG286800 Rh3CG326200 Rh5CG443900 Rh5DG264700 Rh5DG264800 Rh7DG256000
rosa_wichuraiana	Rw6G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	378
AcsI	RAATTY	1 cut(s)	277
AfaI	GTAC	2 cut(s)	298, 312
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	5 cut(s)	113, 117, 164, 347, 395
AluI	AGCT	5 cut(s)	113, 117, 164, 347, 395
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	1 cut(s)	378
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	347, 392
ApoI	RAATTY	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	158
AsuNHI	GCTAGC	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	334, 404
BccI	CCATC	1 cut(s)	404
BciT130I	CCWGG	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	2 cut(s)	114, 442
BisI	GCNGC	2 cut(s)	348, 393
BlsI	GCNGC	2 cut(s)	349, 394
Bme1390I	CCNGG	1 cut(s)	283
BmrFI	CCNGG	1 cut(s)	283
BmtI	GCTAGC	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	194
Bpu10I	CCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	334, 404
BshFI	GGCC	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	131
Bsp1407I	TGTACA	1 cut(s)	310
Bsp143I	GATC	2 cut(s)	370, 404
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	1 cut(s)	409
BspOI	GCTAGC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	378
BsrGI	TGTACA	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	2 cut(s)	370, 404
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	1 cut(s)	144
BstAUI	TGTACA	1 cut(s)	310
BstC8I	GCNNGC	2 cut(s)	83, 115
BstDEI	CTNAG	1 cut(s)	396
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	2 cut(s)	373, 407
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	2 cut(s)	370, 404
BstNI	CCWGG	1 cut(s)	283
BstNSI	RCATGY	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	281
BstV1I	GCAGC	2 cut(s)	334, 404
BstV2I	GAAGAC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	97
Cac8I	GCNNGC	2 cut(s)	83, 115
Csp6I	GTAC	2 cut(s)	297, 311
CviAII	CATG	2 cut(s)	82, 292
CviJI	RGCY	6 cut(s)	113, 117, 131, 164, 347, 395
CviKI_1	RGCY	6 cut(s)	113, 117, 131, 164, 347, 395
CviQI	GTAC	2 cut(s)	297, 311
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	2 cut(s)	372, 406
DpnII	GATC	2 cut(s)	370, 404
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco147I	AGGCCT	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	281
FaeI	CATG	2 cut(s)	85, 295
FaiI	YATR	9 cut(s)	83, 104, 121, 232, 234, 243, 258, 293, 361
FalI	AAGNNNNNCTT	2 cut(s)	28, 60
FatI	CATG	2 cut(s)	81, 291
FauNDI	CATATG	1 cut(s)	232
Fnu4HI	GCNGC	2 cut(s)	348, 393
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	2 cut(s)	348, 393
FspBI	CTAG	2 cut(s)	114, 442
GluI	GCNGC	2 cut(s)	348, 393
HaeIII	GGCC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	85, 295
HinfI	GANTC	1 cut(s)	250
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	5 cut(s)	27, 72, 91, 267, 409
Hpy188III	TCNNGA	2 cut(s)	135, 169
Hpy8I	GTNNAC	1 cut(s)	311
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	5 cut(s)	85, 98, 256, 350, 392
HpyF3I	CTNAG	1 cut(s)	396
Hsp92II	CATG	2 cut(s)	85, 295
Kzo9I	GATC	2 cut(s)	370, 404
LpnPI	CCDG	8 cut(s)	129, 154, 167, 257, 268, 295, 321, 383
Lsp1109I	GCAGC	2 cut(s)	334, 404
MaeI	CTAG	2 cut(s)	114, 442
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	2 cut(s)	372, 406
MboI	GATC	2 cut(s)	370, 404
MboII	GAAGA	3 cut(s)	161, 194, 204
MflI	RGATCY	1 cut(s)	370
MluCI	AATT	6 cut(s)	13, 39, 54, 138, 220, 277
MnlI	CCTC	5 cut(s)	121, 142, 145, 320, 412
MslI	CAYNNNNRTG	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	347
MspR9I	CCNGG	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	283
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	2 cut(s)	370, 404
NheI	GCTAGC	1 cut(s)	113
NlaIII	CATG	2 cut(s)	85, 295
NspI	RCATGY	1 cut(s)	85
PaeI	GCATGC	1 cut(s)	85
PceI	AGGCCT	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	2 cut(s)	349, 394
Psp6I	CCWGG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	2 cut(s)	298, 312
RsaNI	GTAC	2 cut(s)	297, 311
RseI	CAYNNNNRTG	1 cut(s)	90
SatI	GCNGC	2 cut(s)	348, 393
Sau3AI	GATC	2 cut(s)	370, 404
ScrFI	CCNGG	1 cut(s)	283
SetI	ASST	7 cut(s)	115, 119, 166, 331, 349, 397, 402
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
SphI	GCATGC	1 cut(s)	85
Sse9I	AATT	6 cut(s)	13, 39, 54, 138, 220, 277
SseBI	AGGCCT	1 cut(s)	131
SspMI	CTAG	2 cut(s)	114, 442
StuI	AGGCCT	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	262
TasI	AATT	6 cut(s)	13, 39, 54, 138, 220, 277
TatI	WGTACW	2 cut(s)	296, 310
TfiI	GAWTC	1 cut(s)	250
TseI	GCWGC	2 cut(s)	347, 392
TspDTI	ATGAA	1 cut(s)	219
XapI	RAATTY	1 cut(s)	277
XceI	RCATGY	1 cut(s)	85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XspI	CTAG	2 cut(s)	114, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.