Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010623

Physical Location & Seq

Genomic Coordinates Forward (+)

69782833 .. 69785319

Gene Structure 2487 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG478500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCACTCGGATGTTGCAACTATGAGAAAAGCTAGCTTATGGTGTGAGGCCTCAAGAATTGCTGGTGAAGAAGGATTTAGGGCTTTCTGGAAAGGAAATCTGGTTACGATTGCTCATCGTCTTCCTTATTCTTCTGTCAATTTCTATTCATATGAGCAGTATAAAAAGATTCTGCATACAGTTCCGGGACTGGAAAATTCCAGGGATAACATGAGTACAGACATTTGTGTACATTTTGTGGGTGGAGGTTTGGCAGGAATAACAGCTGCAACAGCCACATATCCTTTGGATCTTGTAAGGACACGCCTTGCAGCTCAGGATATACGTTTTTCTGTGGATTGTCAAAATGTAAAAGACAACTTCAGAATTCCAGAAGCTTTCCCTCAGCAGAAGATGATGTCTATTCCATTGATGACCAACACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

141

Amino Acids

15.85

Weight (kDa)

8.49

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	13 - 60	2.1e-10	Mitochondrial carrier protein
Mito_carr	PF00153	76 - 108	7.2e-08	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010623)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406751
rosa_laevigata	RLG00000000934 RLG00000011018 RLG00000017602 RLG00000018634
rosa_multiflora	Rmu_sc0002302.1_g000003 Rmu_sc0002718.1_g000040 Rmu_ssc0000174.1_g000026
rosa_rugosa	Rorug07G0098700
rosa_samantha	Rh2AG218800 Rh2AG478500 Rh2CG220500 Rh2CG464700 Rh2DG224700 Rh3CG286800 Rh3CG326200 Rh5CG443900 Rh5DG264700 Rh5DG264800 Rh7DG256000
rosa_wichuraiana	Rw6G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	297
AcsI	RAATTY	2 cut(s)	196, 366
AcuI	CTGAAG	1 cut(s)	346
AfaI	GTAC	2 cut(s)	217, 231
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	5 cut(s)	32, 36, 266, 314, 377
AluI	AGCT	5 cut(s)	32, 36, 266, 314, 377
AlwI	GGATC	1 cut(s)	297
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	2 cut(s)	266, 311
ApoI	RAATTY	2 cut(s)	196, 366
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	77
AsuNHI	GCTAGC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	113
BbvCI	CCTCAGC	1 cut(s)	384
BbvI	GCAGC	2 cut(s)	253, 323
BciT130I	CCWGG	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	186
BfaI	CTAG	1 cut(s)	33
BisI	GCNGC	2 cut(s)	267, 312
BlsI	GCNGC	2 cut(s)	268, 313
Bme1390I	CCNGG	2 cut(s)	186, 202
BmrFI	CCNGG	2 cut(s)	186, 202
BmtI	GCTAGC	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	113
Bpu10I	CCTNAGC	2 cut(s)	315, 384
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	16
BseMII	CTCAG	2 cut(s)	329, 398
BseNI	ACTGG	1 cut(s)	195
BseXI	GCAGC	2 cut(s)	253, 323
BshFI	GGCC	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	50
Bsp1407I	TGTACA	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	289
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	328, 397
BspOI	GCTAGC	1 cut(s)	36
BspPI	GGATC	1 cut(s)	297
BsrGI	TGTACA	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	181
BstAUI	TGTACA	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	2 cut(s)	315, 384
BstF5I	GGATG	1 cut(s)	16
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	1 cut(s)	202
BstSCI	CCNGG	2 cut(s)	184, 200
BstV1I	GCAGC	2 cut(s)	253, 323
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	216, 230
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	8 cut(s)	32, 36, 50, 83, 266, 275, 314, 377
CviKI_1	RGCY	8 cut(s)	32, 36, 50, 83, 266, 275, 314, 377
CviQI	GTAC	2 cut(s)	216, 230
DdeI	CTNAG	2 cut(s)	315, 384
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
Eco147I	AGGCCT	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	346
EcoRI	GAATTC	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	200
FaeI	CATG	1 cut(s)	214
FaiI	YATR	9 cut(s)	23, 40, 151, 153, 162, 177, 212, 280, 323
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	1 cut(s)	210
FauNDI	CATATG	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	267, 312
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	2 cut(s)	267, 312
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	2 cut(s)	267, 312
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	185
Hin1II	CATG	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	375
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	2 cut(s)	10, 365
Hpy188III	TCNNGA	4 cut(s)	54, 88, 317, 371
Hpy8I	GTNNAC	1 cut(s)	230
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	5 cut(s)	4, 17, 175, 269, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	2 cut(s)	315, 384
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	289
Lsp1109I	GCAGC	2 cut(s)	253, 323
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	4 cut(s)	80, 113, 123, 403
MflI	RGATCY	1 cut(s)	289
MluCI	AATT	4 cut(s)	57, 139, 196, 366
MnlI	CCTC	4 cut(s)	40, 61, 239, 393
MslI	CAYNNNNRTG	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	2 cut(s)	186, 202
MvaI	CCWGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	1 cut(s)	272
NciI	CCSGG	1 cut(s)	186
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	1 cut(s)	289
NheI	GCTAGC	1 cut(s)	32
NlaIII	CATG	1 cut(s)	214
PceI	AGGCCT	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	169
PfoI	TCCNGGA	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	268, 313
Psp6I	CCWGG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	289
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	2 cut(s)	217, 231
RsaNI	GTAC	2 cut(s)	216, 230
RseI	CAYNNNNRTG	1 cut(s)	9
SatI	GCNGC	2 cut(s)	267, 312
Sau3AI	GATC	1 cut(s)	289
ScrFI	CCNGG	2 cut(s)	186, 202
SetI	ASST	8 cut(s)	34, 38, 250, 268, 316, 328, 379, 425
SmiMI	CAYNNNNRTG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	4 cut(s)	57, 139, 196, 366
SseBI	AGGCCT	1 cut(s)	50
SspMI	CTAG	1 cut(s)	33
StuI	AGGCCT	1 cut(s)	50
StyD4I	CCNGG	2 cut(s)	184, 200
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	328
TasI	AATT	4 cut(s)	57, 139, 196, 366
TatI	WGTACW	2 cut(s)	215, 229
TfiI	GAWTC	1 cut(s)	169
TseI	GCWGC	2 cut(s)	266, 311
TspDTI	ATGAA	1 cut(s)	138
XapI	RAATTY	2 cut(s)	196, 366
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.