Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010623

Physical Location & Seq

Genomic Coordinates Reverse (-)

31918861 .. 31926976

Gene Structure 8116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG264700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAAAAAGGACGTTCGTGTTACTAGCAATTTTTCTTTTCCTGATAGCGTTGTTGTGCTTCCATGGATACCACTTACAACAGTTGTTGTGGCTCTTAGGCTCATGGAGTTTGATATATGTGGCTATCGTAAACATGCTACAGAAGAAGCTGGAGACTCAGAAGAACAAGGAATCTGGGAATTTTATAAAAATATGAGGAGATCTGTGCACCTGGTTGAAGAATTTTGTTACATTACTTATAGGATGACTGCTTTGACAATGGAGAACAAAACTCTGATTCTGAAGTTGCAAATGAACAATAGTCCATCTGTGGTTATGTGCAATGATTATAGAGGAAATGGTGTCCTCTCTTCCTTTAAGCAATTACACCACAATGCCATCAAACCCTTTTCTTCCGTGTTCAAAAGTCGAAGCCTCCAGCGCTGCAGTGAAGCCCATCTCACACTGCCTCCCAGATTTTCGTACCAAGCTCTGAAAATCGAAAGCTTTCCAGGTACTAAAACTTGGGCTACTTTTGATAGCGAAGATGTGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0012505 GO:0016020 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

20.53

Weight (kDa)

8.33

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010623)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406751
rosa_laevigata	RLG00000000934 RLG00000011018 RLG00000017602 RLG00000018634
rosa_multiflora	Rmu_sc0002302.1_g000003 Rmu_sc0002718.1_g000040 Rmu_ssc0000174.1_g000026
rosa_rugosa	Rorug07G0098700
rosa_samantha	Rh2AG218800 Rh2AG478500 Rh2CG220500 Rh2CG464700 Rh2DG224700 Rh3CG286800 Rh3CG326200 Rh5CG443900 Rh5DG264700 Rh5DG264800 Rh7DG256000
rosa_wichuraiana	Rw6G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	186
AcsI	RAATTY	2 cut(s)	179, 221
AcuI	CTGAAG	1 cut(s)	302
AfaI	GTAC	2 cut(s)	464, 496
AfeI	AGCGCT	1 cut(s)	422
AgsI	TTSAA	2 cut(s)	218, 403
AjnI	CCWGG	2 cut(s)	210, 490
AluBI	AGCT	3 cut(s)	149, 470, 486
AluI	AGCT	3 cut(s)	149, 470, 486
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	147
Alw44I	GTGCAC	1 cut(s)	206
Aor51HI	AGCGCT	1 cut(s)	422
ApaLI	GTGCAC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	423
ApoI	RAATTY	2 cut(s)	179, 221
Asp700I	GAANNNNTTC	1 cut(s)	486
AspLEI	GCGC	1 cut(s)	423
BaeGI	GKGCMC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	410
BccI	CCATC	3 cut(s)	313, 386, 444
BciT130I	CCWGG	2 cut(s)	212, 492
BciVI	GTATCC	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	2 cut(s)	138, 424
BfoI	RGCGCY	1 cut(s)	424
BfuI	GTATCC	1 cut(s)	60
BglII	AGATCT	1 cut(s)	200
BisI	GCNGC	1 cut(s)	424
BlsI	GCNGC	1 cut(s)	425
Bme1390I	CCNGG	2 cut(s)	212, 492
BmrFI	CCNGG	2 cut(s)	212, 492
BpmI	CTGGAG	2 cut(s)	171, 401
BsaJI	CCNNGG	1 cut(s)	62
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bse3DI	GCAATG	1 cut(s)	328
BseBI	CCWGG	2 cut(s)	212, 492
BseDI	CCNNGG	1 cut(s)	62
BseGI	GGATG	1 cut(s)	249
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	211
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	410
BsiHKAI	GWGCWC	1 cut(s)	210
BsmAI	GTCTC	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	200
Bsp19I	CCATGG	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	170
BspMAI	CTGCAG	1 cut(s)	428
BsrDI	GCAATG	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	1 cut(s)	200
BssT1I	CCWWGG	1 cut(s)	62
Bst2UI	CCWGG	2 cut(s)	212, 492
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	355
BstDEI	CTNAG	2 cut(s)	95, 157
BstDSI	CCRYGG	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	1 cut(s)	203
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	200
BstMWI	GCNNNNNNNGC	1 cut(s)	420
BstNI	CCWGG	2 cut(s)	212, 492
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	2 cut(s)	210, 490
BstSFI	CTRYAG	2 cut(s)	138, 424
BstSLI	GKGCMC	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	410
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
BsuI	GTATCC	1 cut(s)	60
BtgI	CCRYGG	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	249
BtsI	GCAGTG	2 cut(s)	433, 443
BtsIMutI	CAGTG	2 cut(s)	433, 443
CfoI	GCGC	1 cut(s)	423
CsiI	ACCWGGT	1 cut(s)	210
Csp6I	GTAC	2 cut(s)	463, 495
CviAII	CATG	3 cut(s)	63, 103, 134
CviJI	RGCY	9 cut(s)	92, 100, 123, 149, 414, 434, 470, 486, 509
CviKI_1	RGCY	9 cut(s)	92, 100, 123, 149, 414, 434, 470, 486, 509
CviQI	GTAC	2 cut(s)	463, 495
DdeI	CTNAG	2 cut(s)	95, 157
DpnI	GATC	1 cut(s)	202
DpnII	GATC	1 cut(s)	200
Eam1104I	CTCTTC	1 cut(s)	355
EarI	CTCTTC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	62
Eco47III	AGCGCT	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	210, 490
EcoT14I	CCWWGG	1 cut(s)	62
ErhI	CCWWGG	1 cut(s)	62
FaeI	CATG	3 cut(s)	66, 106, 137
FatI	CATG	3 cut(s)	62, 102, 133
Fnu4HI	GCNGC	1 cut(s)	424
FokI	GGATG	1 cut(s)	256
Fsp4HI	GCNGC	1 cut(s)	424
FspBI	CTAG	1 cut(s)	24
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	1 cut(s)	424
GsuI	CTGGAG	2 cut(s)	171, 401
HaeII	RGCGCY	1 cut(s)	424
HhaI	GCGC	1 cut(s)	423
Hin1II	CATG	3 cut(s)	66, 106, 137
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	484
HinfI	GANTC	3 cut(s)	155, 171, 277
Hpy166II	GTNNAC	2 cut(s)	131, 208
Hpy188I	TCNGA	4 cut(s)	160, 276, 282, 474
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	2 cut(s)	131, 208
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	4 cut(s)	208, 289, 321, 426
HpyF10VI	GCNNNNNNNGC	1 cut(s)	420
HpyF3I	CTNAG	2 cut(s)	95, 157
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	3 cut(s)	66, 106, 137
HspAI	GCGC	1 cut(s)	421
Kzo9I	GATC	1 cut(s)	200
LpnPI	CCDG	9 cut(s)	54, 135, 160, 197, 224, 431, 466, 477, 504
Lsp1109I	GCAGC	1 cut(s)	410
MabI	ACCWGGT	1 cut(s)	210
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	19, 227
MalI	GATC	1 cut(s)	202
MboI	GATC	1 cut(s)	200
MboII	GAAGA	6 cut(s)	155, 173, 230, 342, 384, 536
MflI	RGATCY	1 cut(s)	200
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	4 cut(s)	28, 179, 221, 362
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	5 cut(s)	189, 326, 356, 425, 459
MroXI	GAANNNNTTC	1 cut(s)	486
MseI	TTAA	1 cut(s)	357
MslI	CAYNNNNRTG	1 cut(s)	372
MspR9I	CCNGG	2 cut(s)	212, 492
MvaI	CCWGG	2 cut(s)	212, 492
MwoI	GCNNNNNNNGC	1 cut(s)	420
NcoI	CCATGG	1 cut(s)	62
NdeII	GATC	1 cut(s)	200
NlaIII	CATG	3 cut(s)	66, 106, 137
NspI	RCATGY	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	2 cut(s)	171, 277
PkrI	GCNGC	1 cut(s)	425
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PsiI	TTATAA	1 cut(s)	186
Psp6I	CCWGG	2 cut(s)	210, 490
PspGI	CCWGG	2 cut(s)	210, 490
PstI	CTGCAG	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	200
RsaI	GTAC	2 cut(s)	464, 496
RsaNI	GTAC	2 cut(s)	463, 495
RseI	CAYNNNNRTG	1 cut(s)	372
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	1 cut(s)	424
Sau3AI	GATC	1 cut(s)	200
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	2 cut(s)	212, 492
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	6 cut(s)	15, 151, 213, 472, 488, 496
SexAI	ACCWGGT	1 cut(s)	210
SfcI	CTRYAG	2 cut(s)	138, 424
SmiMI	CAYNNNNRTG	1 cut(s)	372
Sse9I	AATT	4 cut(s)	28, 179, 221, 362
SspMI	CTAG	1 cut(s)	24
StyD4I	CCNGG	2 cut(s)	210, 490
StyI	CCWWGG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	2 cut(s)	409, 480
TasI	AATT	4 cut(s)	28, 179, 221, 362
TfiI	GAWTC	2 cut(s)	171, 277
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	2 cut(s)	433, 450
TseI	GCWGC	1 cut(s)	423
TspDTI	ATGAA	2 cut(s)	17, 308
TspGWI	ACGGA	1 cut(s)	385
TspRI	CASTG	2 cut(s)	433, 450
VneI	GTGCAC	1 cut(s)	206
XapI	RAATTY	2 cut(s)	179, 221
XceI	RCATGY	1 cut(s)	137
XmnI	GAANNNNTTC	1 cut(s)	486
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.