Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002302.1

Orthogroup ID

OG0010623

Physical Location & Seq

Genomic Coordinates Reverse (-)

16824 .. 18214

Gene Structure 1391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002302.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atggaagatgctcctccgtaccccatatttgtacgattcaaatgtctccaaattcccactctttgcatcatcttcaccatttcgacaactcaggctggcgcttcattgtgtataatagcttcccctgttcttgatattggccgcagccgcagccgaagtctctgcagcagtcttagatcagaacagtgtcgcagcttctcgccagaggcgtggccggagctctggctaagacttatacaaggcatgtactcggatgttgcaactatgagaaaggctagcttaaggcgtgaggcctcaagaattgctggtgaagagggatttagagctttctggaaaggaaatctggttatgattgctcatcgtcttcctcattcttctgtcaatttctattcatatgagcagtataaaaagattctgtatacagttccgggactggaaaattccagggataacatgagtatagacatttgtgtacattttgtgggtggaggtttggcaggaataacagctgcaacagccacatatcctttggatcttgtaaggacacgccttgcagctcaggtaagatcagatggttgggaggcaatctttgttttcttttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

201

Amino Acids

22.62

Weight (kDa)

8.97

Isoelectric Point (pI)

57.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010623)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406751
rosa_laevigata	RLG00000000934 RLG00000011018 RLG00000017602 RLG00000018634
rosa_multiflora	Rmu_sc0002302.1_g000003 Rmu_sc0002718.1_g000040 Rmu_ssc0000174.1_g000026
rosa_rugosa	Rorug07G0098700
rosa_samantha	Rh2AG218800 Rh2AG478500 Rh2CG220500 Rh2CG464700 Rh2DG224700 Rh3CG286800 Rh3CG326200 Rh5CG443900 Rh5DG264700 Rh5DG264800 Rh7DG256000
rosa_wichuraiana	Rw6G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	419
AciI	CCGC	2 cut(s)	142, 148
AclWI	GGATC	1 cut(s)	540
AcoI	YGGCCR	2 cut(s)	139, 212
AcsI	RAATTY	2 cut(s)	51, 439
AfaI	GTAC	4 cut(s)	20, 33, 248, 474
AflII	CTTAAG	1 cut(s)	280
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	443
AluBI	AGCT	7 cut(s)	119, 195, 220, 279, 326, 509, 557
AluI	AGCT	7 cut(s)	119, 195, 220, 279, 326, 509, 557
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	2 cut(s)	50, 164
AlwI	GGATC	1 cut(s)	540
AoxI	GGCC	3 cut(s)	139, 212, 291
ApeKI	GCWGC	6 cut(s)	144, 150, 165, 192, 509, 554
ApoI	RAATTY	2 cut(s)	51, 439
AspLEI	GCGC	1 cut(s)	101
AsuC2I	CCSGG	1 cut(s)	429
AsuHPI	GGTGA	2 cut(s)	67, 320
AsuNHI	GCTAGC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	222
BarI	GAAGNNNNNNTAC	2 cut(s)	103, 135
BbsI	GAAGAC	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	6 cut(s)	156, 162, 177, 204, 496, 566
BccI	CCATC	1 cut(s)	566
BcgI	CGANNNNNNTGC	2 cut(s)	144, 178
BciT130I	CCWGG	1 cut(s)	445
BcnI	CCSGG	1 cut(s)	429
BcoDI	GTCTC	2 cut(s)	50, 164
BfaI	CTAG	2 cut(s)	276, 604
BfmI	CTRYAG	1 cut(s)	163
BfoI	RGCGCY	1 cut(s)	102
BfrI	CTTAAG	1 cut(s)	280
BisI	GCNGC	8 cut(s)	142, 145, 148, 151, 166, 193, 510, 555
BlsI	GCNGC	8 cut(s)	143, 146, 149, 152, 167, 194, 511, 556
Bme1390I	CCNGG	2 cut(s)	429, 445
BmrFI	CCNGG	2 cut(s)	429, 445
BmsI	GCATC	1 cut(s)	75
BmtI	GCTAGC	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	356
Bpu10I	CCTNAGC	1 cut(s)	558
BpuEI	CTTGAG	1 cut(s)	280
BpuMI	CCSGG	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	444
Bse1I	ACTGG	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	445
BseDI	CCNNGG	1 cut(s)	444
BseGI	GGATG	1 cut(s)	259
BseMII	CTCAG	2 cut(s)	104, 572
BseNI	ACTGG	1 cut(s)	438
BseXI	GCAGC	6 cut(s)	156, 162, 177, 204, 496, 566
BshFI	GGCC	3 cut(s)	141, 214, 293
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	2 cut(s)	215, 428
BslFI	GGGAC	1 cut(s)	444
BsmAI	GTCTC	2 cut(s)	50, 164
BsmFI	GGGAC	1 cut(s)	444
BsnI	GGCC	3 cut(s)	141, 214, 293
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp1407I	TGTACA	1 cut(s)	472
Bsp143I	GATC	3 cut(s)	176, 532, 566
BspACI	CCGC	2 cut(s)	142, 148
BspANI	GGCC	3 cut(s)	141, 214, 293
BspCNI	CTCAG	2 cut(s)	103, 571
BspMAI	CTGCAG	1 cut(s)	167
BspOI	GCTAGC	1 cut(s)	279
BspPI	GGATC	1 cut(s)	540
BspTI	CTTAAG	1 cut(s)	280
BsrGI	TGTACA	1 cut(s)	472
BsrI	ACTGG	1 cut(s)	438
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	3 cut(s)	176, 532, 566
BssNAI	GTATAC	1 cut(s)	420
Bst1107I	GTATAC	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	445
Bst4CI	ACNGT	2 cut(s)	186, 424
Bst6I	CTCTTC	1 cut(s)	306
BstAFI	CTTAAG	1 cut(s)	280
BstAUI	TGTACA	1 cut(s)	472
BstC8I	GCNNGC	2 cut(s)	97, 277
BstDEI	CTNAG	4 cut(s)	90, 173, 227, 558
BstF5I	GGATG	1 cut(s)	259
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	3 cut(s)	179, 535, 569
BstMAI	GTCTC	2 cut(s)	50, 164
BstMBI	GATC	3 cut(s)	176, 532, 566
BstMWI	GCNNNNNNNGC	3 cut(s)	147, 150, 515
BstNI	CCWGG	1 cut(s)	445
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	2 cut(s)	427, 443
BstSFI	CTRYAG	1 cut(s)	163
BstV1I	GCAGC	6 cut(s)	156, 162, 177, 204, 496, 566
BstV2I	GAAGAC	1 cut(s)	356
BstX2I	RGATCY	1 cut(s)	532
BstXI	CCANNNNNNTGG	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	532
BstZ17I	GTATAC	1 cut(s)	420
BsuRI	GGCC	3 cut(s)	141, 214, 293
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	2 cut(s)	97, 277
CfoI	GCGC	1 cut(s)	101
Csp6I	GTAC	4 cut(s)	19, 32, 247, 473
CviAII	CATG	2 cut(s)	244, 454
CviQI	GTAC	4 cut(s)	19, 32, 247, 473
DdeI	CTNAG	4 cut(s)	90, 173, 227, 558
DpnI	GATC	3 cut(s)	178, 534, 568
DpnII	GATC	3 cut(s)	176, 532, 566
EaeI	YGGCCR	2 cut(s)	139, 212
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	220
Eco147I	AGGCCT	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	222
Eco53kI	GAGCTC	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	443
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	2 cut(s)	247, 457
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	2 cut(s)	243, 453
FauNDI	CATATG	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	419
Fnu4HI	GCNGC	8 cut(s)	142, 145, 148, 151, 166, 193, 510, 555
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	8 cut(s)	142, 145, 148, 151, 166, 193, 510, 555
FspBI	CTAG	2 cut(s)	276, 604
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	8 cut(s)	142, 145, 148, 151, 166, 193, 510, 555
HaeII	RGCGCY	1 cut(s)	102
HaeIII	GGCC	3 cut(s)	141, 214, 293
HapII	CCGG	2 cut(s)	215, 428
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	2 cut(s)	247, 457
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HinfI	GANTC	2 cut(s)	36, 412
HpaII	CCGG	2 cut(s)	215, 428
HphI	GGTGA	2 cut(s)	67, 320
Hpy166II	GTNNAC	2 cut(s)	420, 473
Hpy188I	TCNGA	3 cut(s)	181, 253, 571
Hpy188III	TCNNGA	3 cut(s)	131, 297, 331
Hpy8I	GTNNAC	2 cut(s)	420, 473
HpyCH4III	ACNGT	2 cut(s)	186, 424
HpyCH4V	TGCA	5 cut(s)	66, 165, 260, 512, 554
HpyF10VI	GCNNNNNNNGC	3 cut(s)	147, 150, 515
HpyF3I	CTNAG	4 cut(s)	90, 173, 227, 558
Hsp92II	CATG	2 cut(s)	247, 457
HspAI	GCGC	1 cut(s)	99
Kzo9I	GATC	3 cut(s)	176, 532, 566
LmnI	GCTCC	2 cut(s)	16, 217
Lsp1109I	GCAGC	6 cut(s)	156, 162, 177, 204, 496, 566
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	2 cut(s)	276, 604
MalI	GATC	3 cut(s)	178, 534, 568
MboI	GATC	3 cut(s)	176, 532, 566
MboII	GAAGA	5 cut(s)	17, 64, 323, 356, 366
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	4 cut(s)	51, 300, 382, 439
MnlI	CCTC	8 cut(s)	24, 199, 283, 304, 307, 378, 482, 574
MseI	TTAA	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	509
MspCI	CTTAAG	1 cut(s)	280
MspI	CCGG	2 cut(s)	215, 428
MspR9I	CCNGG	2 cut(s)	429, 445
MvaI	CCWGG	1 cut(s)	445
MwoI	GCNNNNNNNGC	3 cut(s)	147, 150, 515
NciI	CCSGG	1 cut(s)	429
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	3 cut(s)	176, 532, 566
NheI	GCTAGC	1 cut(s)	275
NlaIII	CATG	2 cut(s)	247, 457
NspI	RCATGY	1 cut(s)	247
PceI	AGGCCT	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	36, 412
PfoI	TCCNGGA	1 cut(s)	427
PkrI	GCNGC	8 cut(s)	143, 146, 149, 152, 167, 194, 511, 556
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	443
PstI	CTGCAG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	532
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	4 cut(s)	20, 33, 248, 474
RsaNI	GTAC	4 cut(s)	19, 32, 247, 473
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	8 cut(s)	142, 145, 148, 151, 166, 193, 510, 555
Sau3AI	GATC	3 cut(s)	176, 532, 566
ScrFI	CCNGG	2 cut(s)	429, 445
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	9 cut(s)	121, 197, 222, 281, 328, 493, 511, 559, 564
SfaNI	GCATC	1 cut(s)	75
SfcI	CTRYAG	1 cut(s)	163
SmlI	CTYRAG	2 cut(s)	280, 295
SmoI	CTYRAG	2 cut(s)	280, 295
Sse9I	AATT	4 cut(s)	51, 300, 382, 439
SseBI	AGGCCT	1 cut(s)	293
SsiI	CCGC	2 cut(s)	142, 148
SspMI	CTAG	2 cut(s)	276, 604
SstI	GAGCTC	1 cut(s)	222
StuI	AGGCCT	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	427, 443
TaaI	ACNGT	2 cut(s)	186, 424
TaqI	TCGA	1 cut(s)	83
TasI	AATT	4 cut(s)	51, 300, 382, 439
TatI	WGTACW	2 cut(s)	246, 472
TauI	GCSGC	2 cut(s)	144, 150
TfiI	GAWTC	2 cut(s)	36, 412
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	1 cut(s)	191
TseI	GCWGC	6 cut(s)	144, 150, 165, 192, 509, 554
TspDTI	ATGAA	2 cut(s)	93, 381
TspGWI	ACGGA	1 cut(s)	6
TspRI	CASTG	1 cut(s)	191
Vha464I	CTTAAG	1 cut(s)	280
XapI	RAATTY	2 cut(s)	51, 439
XceI	RCATGY	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	526
XmiI	GTMKAC	1 cut(s)	419
XspI	CTAG	2 cut(s)	276, 604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.