Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010623

Physical Location & Seq

Genomic Coordinates Reverse (-)

18919753 .. 18921097

Gene Structure 1345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017602

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGACTATTCCATTGAAGGTACCCTGCGCAAGTAAGATTGCCAAAGTGAAAAAGGGATCTCCTGCTAGCACCAGTAACAGAGGAATCTCAGGGAGTAATGTATCTGCTTCGTTCAATGTTAAACCAAGTGCAGTTCTACCAAAAGTTACTTCTATCCAAGGGAGTAGTAATGAAGTTTTCCCAAAGTTGTGGAGTTGGAAGGAGATGGTACGTAGTATTGCTGATATTGATAACCGTTTCAGGGACCACAGCTTTGTTCAACCTTTGCTTGTGGTATTTACCAGTACTTGCGTGCGTCTGAGCGTTGTTGTGCTTCCATGGATACCACTTACAACAGTTGTTGTGGCTCTTAGGCTCATGGAGTTTGATATATGTGGCCATCGTAAACATGCTACAGAAGAAGCTGGAGACTCCGAAGAACAAGGAATCTGGGAATTTTATAGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006996 GO:0007049 GO:0007135 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051321 GO:0051445 GO:0051704 GO:0051726 GO:0061983 GO:0065007 GO:0071840 GO:0140013 GO:1903046 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

150

Amino Acids

16.45

Weight (kDa)

9.3

Isoelectric Point (pI)

32.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010623)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406751
rosa_laevigata	RLG00000000934 RLG00000011018 RLG00000017602 RLG00000018634
rosa_multiflora	Rmu_sc0002302.1_g000003 Rmu_sc0002718.1_g000040 Rmu_ssc0000174.1_g000026
rosa_rugosa	Rorug07G0098700
rosa_samantha	Rh2AG218800 Rh2AG478500 Rh2CG220500 Rh2CG464700 Rh2DG224700 Rh3CG286800 Rh3CG326200 Rh5CG443900 Rh5DG264700 Rh5DG264800 Rh7DG256000
rosa_wichuraiana	Rw6G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	28
Acc65I	GGTACC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	19
AclWI	GGATC	1 cut(s)	64
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	1 cut(s)	434
AfaI	GTAC	3 cut(s)	21, 210, 286
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	3 cut(s)	16, 115, 260
AjuI	GAANNNNNNNTTGG	2 cut(s)	133, 165
AluBI	AGCT	2 cut(s)	252, 404
AluI	AGCT	2 cut(s)	252, 404
Alw26I	GTCTC	1 cut(s)	402
AlwI	GGATC	1 cut(s)	64
AoxI	GGCC	1 cut(s)	376
ApoI	RAATTY	1 cut(s)	434
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
Asp718I	GGTACC	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	244
AsuNHI	GCTAGC	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	378
BanI	GGYRCC	1 cut(s)	19
BccI	CCATC	2 cut(s)	199, 387
BciVI	GTATCC	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	402
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	393
BfuI	GTATCC	1 cut(s)	315
BmcAI	AGTACT	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	2 cut(s)	21, 245
BmtI	GCTAGC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	426
BsaAI	YACGTR	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	157, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse1I	ACTGG	2 cut(s)	72, 282
BseDI	CCNNGG	2 cut(s)	157, 317
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMII	CTCAG	2 cut(s)	102, 290
BseNI	ACTGG	2 cut(s)	72, 282
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	378
BshNI	GGYRCC	1 cut(s)	19
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	1 cut(s)	402
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	378
Bsp143I	GATC	1 cut(s)	56
Bsp19I	CCATGG	1 cut(s)	317
BspANI	GGCC	1 cut(s)	378
BspCNI	CTCAG	2 cut(s)	101, 291
BspLI	GGNNCC	2 cut(s)	21, 245
BspOI	GCTAGC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	64
BspT107I	GGYRCC	1 cut(s)	19
BsrI	ACTGG	2 cut(s)	72, 282
BssECI	CCNNGG	2 cut(s)	157, 317
BssMI	GATC	1 cut(s)	56
BssT1I	CCWWGG	2 cut(s)	157, 317
Bst4CI	ACNGT	2 cut(s)	236, 337
BstBAI	YACGTR	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	67, 293
BstDEI	CTNAG	3 cut(s)	88, 299, 350
BstDSI	CCRYGG	1 cut(s)	317
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	1 cut(s)	59
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	392
BstSFI	CTRYAG	1 cut(s)	393
BstSNI	TACGTA	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	56
BstXI	CCANNNNNNTGG	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	56
BsuI	GTATCC	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	378
BtgI	CCRYGG	1 cut(s)	317
Cac8I	GCNNGC	2 cut(s)	67, 293
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	244
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	3 cut(s)	20, 209, 285
CviAII	CATG	3 cut(s)	318, 358, 389
CviJI	RGCY	5 cut(s)	252, 347, 355, 378, 404
CviKI_1	RGCY	5 cut(s)	252, 347, 355, 378, 404
CviQI	GTAC	3 cut(s)	20, 209, 285
DdeI	CTNAG	3 cut(s)	88, 299, 350
DpnI	GATC	1 cut(s)	58
DpnII	GATC	1 cut(s)	56
EaeI	YGGCCR	1 cut(s)	376
Eco105I	TACGTA	1 cut(s)	212
Eco130I	CCWWGG	2 cut(s)	157, 317
Eco47I	GGWCC	1 cut(s)	244
EcoT14I	CCWWGG	2 cut(s)	157, 317
ErhI	CCWWGG	2 cut(s)	157, 317
FaeI	CATG	3 cut(s)	321, 361, 392
FaiI	YATR	6 cut(s)	319, 359, 371, 373, 390, 441
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	3 cut(s)	317, 357, 388
FspBI	CTAG	1 cut(s)	66
FspI	TGCGCA	1 cut(s)	28
GlaI	GCGC	1 cut(s)	28
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	378
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	3 cut(s)	321, 361, 392
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HinfI	GANTC	3 cut(s)	84, 410, 426
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	2 cut(s)	300, 415
Hpy8I	GTNNAC	1 cut(s)	386
HpyAV	CCTTC	2 cut(s)	10, 193
HpyCH4III	ACNGT	2 cut(s)	236, 337
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	1 cut(s)	131
HpyF3I	CTNAG	3 cut(s)	88, 299, 350
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	3 cut(s)	321, 361, 392
HspAI	GCGC	1 cut(s)	27
KpnI	GGTACC	1 cut(s)	23
Kzo9I	GATC	1 cut(s)	56
LpnPI	CCDG	8 cut(s)	37, 75, 75, 85, 226, 295, 390, 415
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	2 cut(s)	74, 145
MalI	GATC	1 cut(s)	58
MboI	GATC	1 cut(s)	56
MboII	GAAGA	2 cut(s)	410, 428
MflI	RGATCY	1 cut(s)	56
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	1 cut(s)	434
MluNI	TGGCCA	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	1 cut(s)	74
Mox20I	TGGCCA	1 cut(s)	378
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	1 cut(s)	120
Msp20I	TGGCCA	1 cut(s)	378
NcoI	CCATGG	1 cut(s)	317
NdeII	GATC	1 cut(s)	56
NheI	GCTAGC	1 cut(s)	65
NlaIII	CATG	3 cut(s)	321, 361, 392
NlaIV	GGNNCC	2 cut(s)	21, 245
NsbI	TGCGCA	1 cut(s)	28
NspI	RCATGY	1 cut(s)	392
PfeI	GAWTC	2 cut(s)	84, 426
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
Ppu21I	YACGTR	1 cut(s)	212
PspN4I	GGNNCC	2 cut(s)	21, 245
PspPI	GGNCC	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	56
RsaI	GTAC	3 cut(s)	21, 210, 286
RsaNI	GTAC	3 cut(s)	20, 209, 285
SaqAI	TTAA	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	56
Sau96I	GGNCC	1 cut(s)	244
ScaI	AGTACT	1 cut(s)	286
SchI	GAGTC	1 cut(s)	404
SetI	ASST	5 cut(s)	21, 214, 254, 265, 406
SfcI	CTRYAG	1 cut(s)	393
SinI	GGWCC	1 cut(s)	244
SnaBI	TACGTA	1 cut(s)	212
Sse9I	AATT	1 cut(s)	434
SspMI	CTAG	1 cut(s)	66
StyI	CCWWGG	2 cut(s)	157, 317
TaaI	ACNGT	2 cut(s)	236, 337
TaiI	ACGT	1 cut(s)	214
TasI	AATT	1 cut(s)	434
TatI	WGTACW	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	84, 426
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TspDTI	ATGAA	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	244
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	1 cut(s)	392
XspI	CTAG	1 cut(s)	66
ZrmI	AGTACT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.