Rh2CG220500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0010623
Physical Location & Seq
Forward (+)
22013119 .. 22021861
8743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG220500.1

Sequence Viewer

Length: 417 bp
ATGGTACCACTTACAACAGTTGTTGTGGCTCTTAGGCTCATGGAGTTTGATATATGTGGCCATCGTAAACATACTAGAGAAGAAGCTGGAGACTCCGAAGAACAAGGAATTTGGGAATTTTATAGTAGATGGGAGATGTTAAAATCAATCTATTTGAGCTGGGAAGGGCTTCATTTGGTGAATCAAAGACAAGAAGTCAAGAAAAACAATGGTGAGAGCGAGAACAAGAACAAGAGGAAGAAAGATCTGAAATGGCATATCAGACGAAATACAAAGACAAGATGGAAGTACACCCTCCACAAAATCCCTGAAAGGGACATCCACAAGAACAAAAAAGAGAGCACTGCGATCAGTCAGCTCCGGAGAACCTTTGAGCATGTCAAGCCTTCAAGAGGGTCGTTGAGAATGACAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

16.68

Weight (kDa)

10.08

Isoelectric Point (pI)

67.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 4
AccIII TCCGGA 1 cut(s) 360
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 2 cut(s) 108, 116
AfaI GTAC 2 cut(s) 6, 290
AfiI CCNNNNNNNGG 2 cut(s) 313, 392
AgsI TTSAA 1 cut(s) 390
AhdI GACNNNNNGTC 1 cut(s) 194
AluBI AGCT 3 cut(s) 86, 159, 358
AluI AGCT 3 cut(s) 86, 159, 358
Alw21I GWGCWC 1 cut(s) 344
Alw26I GTCTC 1 cut(s) 84
Aor13HI TCCGGA 1 cut(s) 360
AoxI GGCC 1 cut(s) 58
ApoI RAATTY 2 cut(s) 108, 116
Asp700I GAANNNNTTC 1 cut(s) 168
Asp718I GGTACC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 190, 224
BalI TGGCCA 1 cut(s) 60
BanI GGYRCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 344
BccI CCATC 3 cut(s) 69, 123, 276
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 1 cut(s) 75
BglII AGATCT 1 cut(s) 244
BmeRI GACNNNNNGTC 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 6
BpmI CTGGAG 1 cut(s) 108
BsaWI WCCGGW 1 cut(s) 360
Bsc4I CCNNNNNNNGG 2 cut(s) 313, 392
BseAI TCCGGA 1 cut(s) 360
BseGI GGATG 1 cut(s) 318
BseLI CCNNNNNNNGG 2 cut(s) 313, 392
BseYI CCCAGC 1 cut(s) 159
BshFI GGCC 1 cut(s) 60
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 344
BsiSI CCGG 1 cut(s) 361
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 2 cut(s) 313, 392
BsmAI GTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 329
BsnI GGCC 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 344
Bsp13I TCCGGA 1 cut(s) 360
Bsp143I GATC 2 cut(s) 244, 348
BspANI GGCC 1 cut(s) 60
BspEI TCCGGA 1 cut(s) 360
BspLI GGNNCC 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 4
BssMI GATC 2 cut(s) 244, 348
Bst4CI ACNGT 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 32
BstENI CCTNNNNNAGG 1 cut(s) 390
BstF5I GGATG 1 cut(s) 318
BstKTI GATC 2 cut(s) 247, 351
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 2 cut(s) 244, 348
BstMWI GCNNNNNNNGC 1 cut(s) 382
BstNSI RCATGY 1 cut(s) 380
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BsuRI GGCC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 318
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 1 cut(s) 342
Csp6I GTAC 2 cut(s) 5, 289
CviAII CATG 2 cut(s) 40, 377
CviJI RGCY 8 cut(s) 29, 37, 60, 86, 159, 169, 358, 385
CviKI_1 RGCY 8 cut(s) 29, 37, 60, 86, 159, 169, 358, 385
CviQI GTAC 2 cut(s) 5, 289
DdeI CTNAG 1 cut(s) 32
DpnI GATC 2 cut(s) 246, 350
DpnII GATC 2 cut(s) 244, 348
DriI GACNNNNNGTC 1 cut(s) 194
EaeI YGGCCR 1 cut(s) 58
Eam1105I GACNNNNNGTC 1 cut(s) 194
EcoNI CCTNNNNNAGG 1 cut(s) 390
FaeI CATG 2 cut(s) 43, 380
FaiI YATR 7 cut(s) 41, 53, 55, 72, 123, 258, 378
FaqI GGGAC 1 cut(s) 329
FatI CATG 2 cut(s) 39, 376
FokI GGATG 1 cut(s) 305
FspBI CTAG 1 cut(s) 75
GsaI CCCAGC 1 cut(s) 163
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 60
HapII CCGG 1 cut(s) 361
Hin1II CATG 2 cut(s) 43, 380
HinfI GANTC 2 cut(s) 92, 181
HpaII CCGG 1 cut(s) 361
HphI GGTGA 2 cut(s) 190, 224
Hpy166II GTNNAC 2 cut(s) 68, 291
Hpy188I TCNGA 3 cut(s) 97, 249, 263
Hpy188III TCNNGA 3 cut(s) 199, 361, 390
Hpy8I GTNNAC 2 cut(s) 68, 291
HpyAV CCTTC 2 cut(s) 158, 396
HpyCH4III ACNGT 1 cut(s) 19
HpyF10VI GCNNNNNNNGC 1 cut(s) 382
HpyF3I CTNAG 1 cut(s) 32
Hsp92II CATG 2 cut(s) 43, 380
Kpn2I TCCGGA 1 cut(s) 360
KpnI GGTACC 1 cut(s) 8
Kzo9I GATC 2 cut(s) 244, 348
LmnI GCTCC 1 cut(s) 363
LpnPI CCDG 4 cut(s) 72, 145, 321, 374
MaeI CTAG 1 cut(s) 75
MalI GATC 2 cut(s) 246, 350
MboI GATC 2 cut(s) 244, 348
MboII GAAGA 3 cut(s) 92, 110, 250
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 344
MlsI TGGCCA 1 cut(s) 60
MluCI AATT 2 cut(s) 108, 116
MluNI TGGCCA 1 cut(s) 60
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 3 cut(s) 228, 305, 386
Mox20I TGGCCA 1 cut(s) 60
MroI TCCGGA 1 cut(s) 360
MroXI GAANNNNTTC 1 cut(s) 168
MscI TGGCCA 1 cut(s) 60
MseI TTAA 1 cut(s) 140
Msp20I TGGCCA 1 cut(s) 60
MspI CCGG 1 cut(s) 361
MwoI GCNNNNNNNGC 1 cut(s) 382
NdeII GATC 2 cut(s) 244, 348
NlaIII CATG 2 cut(s) 43, 380
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 380
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 1 cut(s) 181
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PspFI CCCAGC 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 244
RsaI GTAC 2 cut(s) 6, 290
RsaNI GTAC 2 cut(s) 5, 289
SaqAI TTAA 1 cut(s) 140
Sau3AI GATC 2 cut(s) 244, 348
SchI GAGTC 1 cut(s) 86
SduI GDGCHC 1 cut(s) 344
SetI ASST 4 cut(s) 88, 161, 360, 371
Sse9I AATT 2 cut(s) 108, 116
SspMI CTAG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 19
TasI AATT 2 cut(s) 108, 116
TatI WGTACW 1 cut(s) 288
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TscAI CASTG 1 cut(s) 349
TspDTI ATGAA 1 cut(s) 161
TspRI CASTG 1 cut(s) 349
XagI CCTNNNNNAGG 1 cut(s) 390
XapI RAATTY 2 cut(s) 108, 116
XceI RCATGY 1 cut(s) 380
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.