Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0010623

Physical Location & Seq

Genomic Coordinates Reverse (-)

35524106 .. 35527392

Gene Structure 3287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG326200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGGTAGTGAAAATTGGGTGTGTCTGATTTTGGTAAGAACTGCTTTATTGAGAATTATCTTATCTTTTCAGATACAAGGCATGTACTCGGATGTTGCAACTATGAGAAAAGCTAGCTTAAGGCGTGAGGCCTCAAGAATTGCTGGTGAAGAGGGATTTAGAGCTTTCTGGAAAGGAAATCTGGTTATGATTGCTCATCGTCTTCCTTATTCTTCTGTCAATTTCTATTCATATGAGCAGTATAAAAAGATTCTGCATACAGTTCCGGGACTGGAAAATTCCAAGGATAACATGAGTATAGACATTTGTGTACATTTTGTGGGTGGAGGTTTGGCAGGAATAACAGCTGCAACAGCCACATATCCTTTGAATCTTGTAAGGACATGCCTTGCAGCTCAGGTTCTGGCATCGCTGGACAGTGCCATAAAGATAGAATATTTATCTTCAAACTTTGAGACTACCGGCTCATGGAGTTTGATATATGTGGCCATCGTAAACATGCTACAGAAGAAGCTGGAGACTCAGAAGAACAAGGAATCTGGGAATTTTATAAAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

186

Amino Acids

20.76

Weight (kDa)

9.28

Isoelectric Point (pI)

30.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	40 - 87	6.8e-10	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0010623)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406751
rosa_laevigata	RLG00000000934 RLG00000011018 RLG00000017602 RLG00000018634
rosa_multiflora	Rmu_sc0002302.1_g000003 Rmu_sc0002718.1_g000040 Rmu_ssc0000174.1_g000026
rosa_rugosa	Rorug07G0098700
rosa_samantha	Rh2AG218800 Rh2AG478500 Rh2CG220500 Rh2CG464700 Rh2DG224700 Rh3CG286800 Rh3CG326200 Rh5CG443900 Rh5DG264700 Rh5DG264800 Rh7DG256000
rosa_wichuraiana	Rw6G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	551
AcoI	YGGCCR	1 cut(s)	486
AcsI	RAATTY	2 cut(s)	277, 544
AfaI	GTAC	2 cut(s)	86, 312
AfiI	CCNNNNNNNGG	1 cut(s)	468
AflII	CTTAAG	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	370, 447
AluBI	AGCT	6 cut(s)	113, 117, 164, 347, 395, 514
AluI	AGCT	6 cut(s)	113, 117, 164, 347, 395, 514
Alw26I	GTCTC	2 cut(s)	449, 512
AlwNI	CAGNNNCTG	1 cut(s)	403
AoxI	GGCC	2 cut(s)	129, 486
ApeKI	GCWGC	2 cut(s)	347, 392
ApoI	RAATTY	2 cut(s)	277, 544
AsuC2I	CCSGG	1 cut(s)	267
AsuHPI	GGTGA	1 cut(s)	158
AsuNHI	GCTAGC	1 cut(s)	113
BalI	TGGCCA	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	334, 404
BccI	CCATC	1 cut(s)	497
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	2 cut(s)	449, 512
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	503
BfrI	CTTAAG	1 cut(s)	118
BisI	GCNGC	2 cut(s)	348, 393
BlsI	GCNGC	2 cut(s)	349, 394
Bme1390I	CCNGG	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	267
BmsI	GCATC	1 cut(s)	416
BmtI	GCTAGC	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	194
BpmI	CTGGAG	1 cut(s)	536
Bpu10I	CCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	118
BpuMI	CCSGG	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	1 cut(s)	468
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	468
BseMII	CTCAG	2 cut(s)	410, 536
BseNI	ACTGG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	334, 404
BshFI	GGCC	2 cut(s)	131, 488
BsiSI	CCGG	2 cut(s)	266, 462
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	468
BsmAI	GTCTC	2 cut(s)	449, 512
BsmFI	GGGAC	1 cut(s)	282
BsnI	GGCC	2 cut(s)	131, 488
Bsp1407I	TGTACA	1 cut(s)	310
BspANI	GGCC	2 cut(s)	131, 488
BspCNI	CTCAG	2 cut(s)	409, 535
BspOI	GCTAGC	1 cut(s)	117
BspTI	CTTAAG	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	461
BsrGI	TGTACA	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	276
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	282
Bst4CI	ACNGT	2 cut(s)	262, 419
Bst6I	CTCTTC	1 cut(s)	144
BstAFI	CTTAAG	1 cut(s)	118
BstAUI	TGTACA	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	396, 522
BstF5I	GGATG	1 cut(s)	97
BstMAI	GTCTC	2 cut(s)	449, 512
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNSI	RCATGY	3 cut(s)	85, 387, 502
BstSCI	CCNGG	1 cut(s)	265
BstSFI	CTRYAG	1 cut(s)	503
BstV1I	GCAGC	2 cut(s)	334, 404
BstV2I	GAAGAC	1 cut(s)	194
BsuRI	GGCC	2 cut(s)	131, 488
BtgZI	GCGATG	1 cut(s)	393
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	424
Cac8I	GCNNGC	1 cut(s)	115
CaiI	CAGNNNCTG	1 cut(s)	403
Cfr10I	RCCGGY	1 cut(s)	461
Csp6I	GTAC	2 cut(s)	85, 311
CviAII	CATG	5 cut(s)	82, 292, 384, 468, 499
CviQI	GTAC	2 cut(s)	85, 311
DdeI	CTNAG	2 cut(s)	396, 522
EaeI	YGGCCR	1 cut(s)	486
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	282
Eco147I	AGGCCT	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	5 cut(s)	85, 295, 387, 471, 502
FalI	AAGNNNNNCTT	2 cut(s)	28, 60
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	5 cut(s)	81, 291, 383, 467, 498
FauNDI	CATATG	1 cut(s)	232
Fnu4HI	GCNGC	2 cut(s)	348, 393
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	2 cut(s)	348, 393
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	2 cut(s)	348, 393
GsuI	CTGGAG	1 cut(s)	536
HaeIII	GGCC	2 cut(s)	131, 488
HapII	CCGG	2 cut(s)	266, 462
Hin1II	CATG	5 cut(s)	85, 295, 387, 471, 502
HinfI	GANTC	4 cut(s)	250, 370, 520, 536
HpaII	CCGG	2 cut(s)	266, 462
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	2 cut(s)	311, 496
Hpy188I	TCNGA	4 cut(s)	27, 72, 91, 525
Hpy188III	TCNNGA	2 cut(s)	135, 169
Hpy8I	GTNNAC	2 cut(s)	311, 496
HpyCH4III	ACNGT	2 cut(s)	262, 419
HpyCH4V	TGCA	4 cut(s)	98, 256, 350, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	2 cut(s)	396, 522
Hsp92II	CATG	5 cut(s)	85, 295, 387, 471, 502
Lsp1109I	GCAGC	2 cut(s)	334, 404
LweI	GCATC	1 cut(s)	416
MaeI	CTAG	1 cut(s)	114
MboII	GAAGA	6 cut(s)	161, 194, 204, 435, 520, 538
MlsI	TGGCCA	1 cut(s)	488
MluCI	AATT	6 cut(s)	13, 54, 138, 220, 277, 544
MluNI	TGGCCA	1 cut(s)	488
MlyI	GAGTC	1 cut(s)	514
MnlI	CCTC	4 cut(s)	121, 142, 145, 320
Mox20I	TGGCCA	1 cut(s)	488
MscI	TGGCCA	1 cut(s)	488
MseI	TTAA	1 cut(s)	119
Msp20I	TGGCCA	1 cut(s)	488
MspA1I	CMGCKG	1 cut(s)	347
MspCI	CTTAAG	1 cut(s)	118
MspI	CCGG	2 cut(s)	266, 462
MspR9I	CCNGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	353
NciI	CCSGG	1 cut(s)	267
NdeI	CATATG	1 cut(s)	232
NheI	GCTAGC	1 cut(s)	113
NlaIII	CATG	5 cut(s)	85, 295, 387, 471, 502
NspI	RCATGY	3 cut(s)	85, 387, 502
PceI	AGGCCT	1 cut(s)	131
PfeI	GAWTC	3 cut(s)	250, 370, 536
PfoI	TCCNGGA	1 cut(s)	265
PkrI	GCNGC	2 cut(s)	349, 394
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
PsiI	TTATAA	1 cut(s)	551
PstNI	CAGNNNCTG	1 cut(s)	403
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	2 cut(s)	86, 312
RsaNI	GTAC	2 cut(s)	85, 311
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	2 cut(s)	348, 393
SchI	GAGTC	1 cut(s)	514
ScrFI	CCNGG	1 cut(s)	267
SetI	ASST	8 cut(s)	115, 119, 166, 331, 349, 397, 402, 516
SfaNI	GCATC	1 cut(s)	416
SfcI	CTRYAG	1 cut(s)	503
SmlI	CTYRAG	2 cut(s)	118, 133
SmoI	CTYRAG	2 cut(s)	118, 133
Sse9I	AATT	6 cut(s)	13, 54, 138, 220, 277, 544
SseBI	AGGCCT	1 cut(s)	131
SspI	AATATT	1 cut(s)	437
SspMI	CTAG	1 cut(s)	114
StuI	AGGCCT	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	262, 419
TasI	AATT	6 cut(s)	13, 54, 138, 220, 277, 544
TatI	WGTACW	2 cut(s)	84, 310
TfiI	GAWTC	3 cut(s)	250, 370, 536
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	1 cut(s)	424
TseI	GCWGC	2 cut(s)	347, 392
TspDTI	ATGAA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	424
Vha464I	CTTAAG	1 cut(s)	118
XapI	RAATTY	2 cut(s)	277, 544
XceI	RCATGY	3 cut(s)	85, 387, 502
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.