Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002718.1

Orthogroup ID

OG0010623

Physical Location & Seq

Genomic Coordinates Reverse (-)

112881 .. 114077

Gene Structure 1197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002718.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgcactcggatgttgcaactatgagaaaagctagcttatggcgtgaggcctcaagaattgctggtgaagagggatttagagctttctggaaaggaaatctggttacgattgctcatcgtcttccttattcttctgtcaatttctattcatatgagcagtataacaagattctgcatacagttccgggactggaaaattccagggataacatgagtatagacatttgtgtacattttgtgggtggaggtttggcaggaataacagctgcaacagccacatatcctttggatcttgtaaggacacgccttgcagctctgctttgtgcaacctttgcttgtggtatttacaagtacttgcgtgcgtctgaggtgaagaaaaggccttccacagattacatggcttgtggaggtaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

138

Amino Acids

15.29

Weight (kDa)

9.14

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010623)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406751
rosa_laevigata	RLG00000000934 RLG00000011018 RLG00000017602 RLG00000018634
rosa_multiflora	Rmu_sc0002302.1_g000003 Rmu_sc0002718.1_g000040 Rmu_ssc0000174.1_g000026
rosa_rugosa	Rorug07G0098700
rosa_samantha	Rh2AG218800 Rh2AG478500 Rh2CG220500 Rh2CG464700 Rh2DG224700 Rh3CG286800 Rh3CG326200 Rh5CG443900 Rh5DG264700 Rh5DG264800 Rh7DG256000
rosa_wichuraiana	Rw6G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	196
AfaI	GTAC	2 cut(s)	231, 353
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	5 cut(s)	32, 36, 83, 266, 314
AluI	AGCT	5 cut(s)	32, 36, 83, 266, 314
AlwI	GGATC	1 cut(s)	297
AoxI	GGCC	2 cut(s)	48, 380
ApeKI	GCWGC	2 cut(s)	266, 311
ApoI	RAATTY	1 cut(s)	196
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	77, 382
AsuNHI	GCTAGC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	253, 323
BciT130I	CCWGG	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	186
BfaI	CTAG	1 cut(s)	33
BisI	GCNGC	2 cut(s)	267, 312
BlsI	GCNGC	2 cut(s)	268, 313
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	2 cut(s)	186, 202
BmrFI	CCNGG	2 cut(s)	186, 202
BmtI	GCTAGC	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	195
BseXI	GCAGC	2 cut(s)	253, 323
BshFI	GGCC	2 cut(s)	50, 382
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	201
BsnI	GGCC	2 cut(s)	50, 382
Bsp1407I	TGTACA	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	289
BspANI	GGCC	2 cut(s)	50, 382
BspCNI	CTCAG	1 cut(s)	358
BspOI	GCTAGC	1 cut(s)	36
BspPI	GGATC	1 cut(s)	297
BsrGI	TGTACA	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstAUI	TGTACA	1 cut(s)	229
BstC8I	GCNNGC	2 cut(s)	34, 360
BstDEI	CTNAG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	16
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 332
BstNI	CCWGG	1 cut(s)	202
BstSCI	CCNGG	2 cut(s)	184, 200
BstV1I	GCAGC	2 cut(s)	253, 323
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	50, 382
BtsCI	GGATG	1 cut(s)	16
Cac8I	GCNNGC	2 cut(s)	34, 360
CseI	GACGC	1 cut(s)	351
Csp6I	GTAC	2 cut(s)	230, 352
CviAII	CATG	2 cut(s)	211, 397
CviJI	RGCY	9 cut(s)	32, 36, 50, 83, 266, 275, 314, 382, 401
CviKI_1	RGCY	9 cut(s)	32, 36, 50, 83, 266, 275, 314, 382, 401
CviQI	GTAC	2 cut(s)	230, 352
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco147I	AGGCCT	2 cut(s)	50, 382
EcoRII	CCWGG	1 cut(s)	200
FaeI	CATG	2 cut(s)	214, 400
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	2 cut(s)	210, 396
FauNDI	CATATG	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	267, 312
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	2 cut(s)	267, 312
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	2 cut(s)	267, 312
HaeIII	GGCC	2 cut(s)	50, 382
HapII	CCGG	1 cut(s)	185
HgaI	GACGC	1 cut(s)	351
Hin1II	CATG	2 cut(s)	214, 400
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	2 cut(s)	77, 382
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	2 cut(s)	10, 367
Hpy188III	TCNNGA	2 cut(s)	54, 88
Hpy8I	GTNNAC	1 cut(s)	230
HpyAV	CCTTC	1 cut(s)	393
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	6 cut(s)	4, 17, 175, 269, 311, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 332
HpyF3I	CTNAG	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	214, 400
Kzo9I	GATC	1 cut(s)	289
LpnPI	CCDG	8 cut(s)	48, 73, 86, 176, 187, 198, 214, 240
Lsp1109I	GCAGC	2 cut(s)	253, 323
MaeI	CTAG	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	4 cut(s)	80, 113, 123, 385
MflI	RGATCY	1 cut(s)	289
MluCI	AATT	4 cut(s)	57, 139, 196, 412
MnlI	CCTC	6 cut(s)	40, 61, 64, 239, 361, 401
MslI	CAYNNNNRTG	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	2 cut(s)	186, 202
MvaI	CCWGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	2 cut(s)	272, 332
NciI	CCSGG	1 cut(s)	186
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	1 cut(s)	289
NheI	GCTAGC	1 cut(s)	32
NlaIII	CATG	2 cut(s)	214, 400
PceI	AGGCCT	2 cut(s)	50, 382
PfeI	GAWTC	1 cut(s)	169
PfoI	TCCNGGA	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	268, 313
Psp6I	CCWGG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	289
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	2 cut(s)	231, 353
RsaNI	GTAC	2 cut(s)	230, 352
RseI	CAYNNNNRTG	1 cut(s)	9
SatI	GCNGC	2 cut(s)	267, 312
Sau3AI	GATC	1 cut(s)	289
ScaI	AGTACT	1 cut(s)	353
ScrFI	CCNGG	2 cut(s)	186, 202
SetI	ASST	9 cut(s)	34, 38, 85, 250, 268, 316, 332, 372, 412
SmiMI	CAYNNNNRTG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	4 cut(s)	57, 139, 196, 412
SseBI	AGGCCT	2 cut(s)	50, 382
SspMI	CTAG	1 cut(s)	33
StuI	AGGCCT	2 cut(s)	50, 382
StyD4I	CCNGG	2 cut(s)	184, 200
TaaI	ACNGT	1 cut(s)	181
TasI	AATT	4 cut(s)	57, 139, 196, 412
TatI	WGTACW	2 cut(s)	229, 351
TfiI	GAWTC	1 cut(s)	169
TseI	GCWGC	2 cut(s)	266, 311
TspDTI	ATGAA	1 cut(s)	138
XapI	RAATTY	1 cut(s)	196
XcmI	CCANNNNNNNNNTGG	2 cut(s)	283, 394
XspI	CTAG	1 cut(s)	33
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.