Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010623

Physical Location & Seq

Genomic Coordinates Reverse (-)

31928624 .. 31930322

Gene Structure 1699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG264800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGATGCGAAGCTAAACGAGCTGACTCACAACTTTGGGTGTTTCAAAGCGGTGCTGATCCGTAATGATTTTGCACTTAGGTTGAATCGTAAAGGCGTGGCCGGAGCTCTGGCTAAGACTTGTACTGCGCCTCTTGCTCGGCTTACTATACTCTTTCAGATACAAGGCATGTACTCGGATGTTGCAACTATGAGAAAAGCTAGATTAAGGCGTGAGGCCTCAAGAATTGCTGGTGAAGAGGGATTTAGAGCTTTCTGGAAAGGAAATCTGGTTATGATTGCTCATCGTCTTCCTTATTCTTCTGTCAATTTCTATTCATATGAGCAGTATAAAAAGATTCTGCATACAGTTCCGGGACTGGAAAATTCCAGGGATAACATGAGTATAGACATTTGTGTACATTTTGTGGGTGGAGGTTTGGCAGGAATAACAGCTGCAACAGCCACATATCCTTTGGATCTTGTAAGGACACGCCTTGCAGCTCAGCATGCTGCATGTCTTCTCAGTTTCTCCTTGGCATGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

175

Amino Acids

19.35

Weight (kDa)

9.71

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	32 - 116	5.5e-16	Mitochondrial carrier protein
Mito_carr	PF00153	132 - 163	1.5e-07	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010623)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0406751
rosa_laevigata	RLG00000000934 RLG00000011018 RLG00000017602 RLG00000018634
rosa_multiflora	Rmu_sc0002302.1_g000003 Rmu_sc0002718.1_g000040 Rmu_ssc0000174.1_g000026
rosa_rugosa	Rorug07G0098700
rosa_samantha	Rh2AG218800 Rh2AG478500 Rh2CG220500 Rh2CG464700 Rh2DG224700 Rh3CG286800 Rh3CG326200 Rh5CG443900 Rh5DG264700 Rh5DG264800 Rh7DG256000
rosa_wichuraiana	Rw6G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	2 cut(s)	52, 465
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	364
AfaI	GTAC	3 cut(s)	124, 173, 399
AgsI	TTSAA	2 cut(s)	46, 85
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	7 cut(s)	13, 22, 107, 200, 251, 434, 482
AluI	AGCT	7 cut(s)	13, 22, 107, 200, 251, 434, 482
Alw21I	GWGCWC	1 cut(s)	109
AlwI	GGATC	2 cut(s)	52, 465
AoxI	GGCC	2 cut(s)	99, 216
ApeKI	GCWGC	3 cut(s)	434, 479, 491
ApoI	RAATTY	1 cut(s)	364
AspLEI	GCGC	1 cut(s)	130
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	109
BbsI	GAAGAC	2 cut(s)	281, 491
Bbv12I	GWGCWC	1 cut(s)	109
BbvI	GCAGC	3 cut(s)	421, 478, 491
BciT130I	CCWGG	1 cut(s)	370
BcnI	CCSGG	1 cut(s)	354
BfaI	CTAG	1 cut(s)	201
BisI	GCNGC	3 cut(s)	435, 480, 492
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	3 cut(s)	436, 481, 493
Bme1390I	CCNGG	2 cut(s)	354, 370
BmrFI	CCNGG	2 cut(s)	354, 370
BpiI	GAAGAC	2 cut(s)	281, 491
Bpu1102I	GCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	205
BpuMI	CCSGG	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	369, 513
Bse1I	ACTGG	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	2 cut(s)	369, 513
BseGI	GGATG	2 cut(s)	10, 184
BseMII	CTCAG	2 cut(s)	497, 517
BseNI	ACTGG	1 cut(s)	363
BseXI	GCAGC	3 cut(s)	421, 478, 491
BshFI	GGCC	2 cut(s)	101, 218
BsiHKAI	GWGCWC	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	102, 353
BslFI	GGGAC	1 cut(s)	369
BsmFI	GGGAC	1 cut(s)	369
BsnI	GGCC	2 cut(s)	101, 218
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp1407I	TGTACA	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	57, 457
Bsp1720I	GCTNAGC	1 cut(s)	483
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	2 cut(s)	101, 218
BspCNI	CTCAG	2 cut(s)	496, 516
BspPI	GGATC	2 cut(s)	52, 465
BsrGI	TGTACA	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	363
BssECI	CCNNGG	2 cut(s)	369, 513
BssMI	GATC	2 cut(s)	57, 457
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	1 cut(s)	231
BstAUI	TGTACA	1 cut(s)	397
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	4 cut(s)	77, 114, 483, 503
BstF5I	GGATG	2 cut(s)	10, 184
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	2 cut(s)	60, 460
BstMBI	GATC	2 cut(s)	57, 457
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 134, 440, 488
BstNI	CCWGG	1 cut(s)	370
BstNSI	RCATGY	4 cut(s)	172, 491, 498, 522
BstSCI	CCNGG	2 cut(s)	352, 368
BstV1I	GCAGC	3 cut(s)	421, 478, 491
BstV2I	GAAGAC	2 cut(s)	281, 491
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	101, 218
BtsCI	GGATG	2 cut(s)	10, 184
Cac8I	GCNNGC	1 cut(s)	489
CfoI	GCGC	1 cut(s)	130
Csp6I	GTAC	3 cut(s)	123, 172, 398
CviAII	CATG	5 cut(s)	169, 379, 488, 495, 519
CviQI	GTAC	3 cut(s)	123, 172, 398
DdeI	CTNAG	4 cut(s)	77, 114, 483, 503
DpnI	GATC	2 cut(s)	59, 459
DpnII	GATC	2 cut(s)	57, 457
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Ecl136II	GAGCTC	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	513
Eco147I	AGGCCT	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	107
EcoICRI	GAGCTC	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	513
EcoT38I	GRGCYC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	5 cut(s)	172, 382, 491, 498, 522
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	5 cut(s)	168, 378, 487, 494, 518
FauNDI	CATATG	1 cut(s)	319
Fnu4HI	GCNGC	3 cut(s)	435, 480, 492
FokI	GGATG	2 cut(s)	17, 191
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	3 cut(s)	435, 480, 492
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	3 cut(s)	435, 480, 492
HaeIII	GGCC	2 cut(s)	101, 218
HapII	CCGG	2 cut(s)	102, 353
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	5 cut(s)	172, 382, 491, 498, 522
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HinfI	GANTC	3 cut(s)	25, 85, 337
HpaII	CCGG	2 cut(s)	102, 353
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	1 cut(s)	398
Hpy188I	TCNGA	2 cut(s)	159, 178
Hpy188III	TCNNGA	2 cut(s)	222, 256
Hpy8I	GTNNAC	1 cut(s)	398
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4V	TGCA	6 cut(s)	74, 185, 343, 437, 479, 494
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 134, 440, 488
HpyF3I	CTNAG	4 cut(s)	77, 114, 483, 503
Hsp92II	CATG	5 cut(s)	172, 382, 491, 498, 522
HspAI	GCGC	1 cut(s)	128
Kzo9I	GATC	2 cut(s)	57, 457
LmnI	GCTCC	1 cut(s)	104
Lsp1109I	GCAGC	3 cut(s)	421, 478, 491
MaeI	CTAG	1 cut(s)	201
MalI	GATC	2 cut(s)	59, 459
MboI	GATC	2 cut(s)	57, 457
MboII	GAAGA	4 cut(s)	248, 281, 291, 491
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	3 cut(s)	225, 307, 364
MlyI	GAGTC	1 cut(s)	19
MnlI	CCTC	5 cut(s)	141, 208, 229, 232, 407
MseI	TTAA	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	2 cut(s)	102, 353
MspR9I	CCNGG	2 cut(s)	354, 370
MvaI	CCWGG	1 cut(s)	370
MwoI	GCNNNNNNNGC	4 cut(s)	19, 134, 440, 488
NciI	CCSGG	1 cut(s)	354
NdeI	CATATG	1 cut(s)	319
NdeII	GATC	2 cut(s)	57, 457
NlaIII	CATG	5 cut(s)	172, 382, 491, 498, 522
NmeAIII	GCCGAG	1 cut(s)	118
NspI	RCATGY	4 cut(s)	172, 491, 498, 522
PaeI	GCATGC	1 cut(s)	491
PceI	AGGCCT	1 cut(s)	218
PfeI	GAWTC	2 cut(s)	85, 337
PfoI	TCCNGGA	1 cut(s)	352
PkrI	GCNGC	3 cut(s)	436, 481, 493
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	457
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	3 cut(s)	124, 173, 399
RsaNI	GTAC	3 cut(s)	123, 172, 398
SacI	GAGCTC	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	3 cut(s)	435, 480, 492
Sau3AI	GATC	2 cut(s)	57, 457
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	2 cut(s)	354, 370
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	9 cut(s)	15, 24, 83, 109, 202, 253, 418, 436, 484
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
SphI	GCATGC	1 cut(s)	491
Sse9I	AATT	3 cut(s)	225, 307, 364
SseBI	AGGCCT	1 cut(s)	218
SsiI	CCGC	1 cut(s)	50
SspMI	CTAG	1 cut(s)	201
SstI	GAGCTC	1 cut(s)	109
StuI	AGGCCT	1 cut(s)	218
StyD4I	CCNGG	2 cut(s)	352, 368
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	1 cut(s)	349
TasI	AATT	3 cut(s)	225, 307, 364
TatI	WGTACW	3 cut(s)	122, 171, 397
TfiI	GAWTC	2 cut(s)	85, 337
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TseI	GCWGC	3 cut(s)	434, 479, 491
TspDTI	ATGAA	1 cut(s)	306
TspGWI	ACGGA	1 cut(s)	50
XapI	RAATTY	1 cut(s)	364
XceI	RCATGY	4 cut(s)	172, 491, 498, 522
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.