Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003002

Physical Location & Seq

Genomic Coordinates Forward (+)

31312837 .. 31313970

Gene Structure 1134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37962

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTTTCAAAAATTCAGCTACAAGGAGATAAAGAAGGCGACAGAAAATTTCAGTACTACCATTGGACAAGGGGGATTTGGAATTGTGTACAAAGCTCACTTTAGTAATGGTTTAGTGGCAGCAGTGAAGCAGATGAATAAAGTTTCCGAGCACGGGGAGCATGAGTTTTGCAGAGAGATAGTGCTTCTTGCCAGGTTGCATCATCGGCATCTTGTTTCTCTTAGGGGTTTCTGCATTGAGAAACATAAGAGGTACACAATTATATATCTGATCAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

93

Amino Acids

10.84

Weight (kDa)

9.85

Isoelectric Point (pI)

21.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	17 - 90	5.1e-11	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	19 - 88	8e-11	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49730 AT1G49730 AT1G49730 AT1G49730 AT1G49730 AT3G19300
fragaria_vesca	FvH4_2g05840 FvH4_2g05840 FvH4_2g05840 FvH4_2g05840 FvH4_2g05840
malus_domestica	MD05G1082700.v1.1
prunus_persica	Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1
pyrus_communis	pycom05g07770
rosa_chinensis	RchiOBHm_Chr4g0408511 RchiOBHm_Chr6g0257781
rosa_laevigata	RLG00000014723 RLG00000014972
rosa_multiflora	Rmu_co8277925.1_g000001 Rmu_co8468953.1_g000001 Rmu_sc0003520.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352930 Rroxscaffold_7G00208940
rosa_rugosa	Rorug05G0568100 Rorug05G0568200 Rorug05G0568300 Rorug05G0568400
rosa_samantha	Rh2AG563700 Rh6AG085100 Rh6AG085200 Rh6BG079500 Rh6CG074500 Rh6DG071400
rosa_wichuraiana	Rw6G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	11, 46
AfaI	GTAC	3 cut(s)	55, 89, 254
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	8
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	2 cut(s)	18, 95
AluI	AGCT	2 cut(s)	18, 95
Alw21I	GWGCWC	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	2 cut(s)	11, 46
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	193
BclI	TGATCA	1 cut(s)	270
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
BmcAI	AGTACT	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	193
BmsI	GCATC	2 cut(s)	208, 217
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	193
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp1407I	TGTACA	1 cut(s)	87
Bsp143I	GATC	1 cut(s)	270
BsrGI	TGTACA	1 cut(s)	87
BssMI	GATC	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	193
BstAUI	TGTACA	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	221
BstKTI	GATC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 205
BstNI	CCWGG	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	131
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	129
Csp6I	GTAC	3 cut(s)	54, 88, 253
CviAII	CATG	1 cut(s)	161
CviJI	RGCY	2 cut(s)	18, 95
CviKI_1	RGCY	2 cut(s)	18, 95
CviQI	GTAC	3 cut(s)	54, 88, 253
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	191
FaeI	CATG	1 cut(s)	164
FaiI	YATR	4 cut(s)	162, 246, 263, 265
FatI	CATG	1 cut(s)	160
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	120
GluI	GCNGC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	164
Hpy166II	GTNNAC	2 cut(s)	88, 255
Hpy188I	TCNGA	2 cut(s)	148, 270
Hpy8I	GTNNAC	2 cut(s)	88, 255
HpyAV	CCTTC	1 cut(s)	28
HpyCH4V	TGCA	3 cut(s)	171, 199, 234
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 205
HpyF3I	CTNAG	1 cut(s)	221
Hsp92II	CATG	1 cut(s)	164
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	270
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	2 cut(s)	178, 205
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	2 cut(s)	208, 217
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	4 cut(s)	11, 46, 81, 258
MnlI	CCTC	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	193
MwoI	GCNNNNNNNGC	2 cut(s)	157, 205
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
RsaI	GTAC	3 cut(s)	55, 89, 254
RsaNI	GTAC	3 cut(s)	54, 88, 253
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	270
ScaI	AGTACT	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	4 cut(s)	20, 97, 197, 254
SfaNI	GCATC	2 cut(s)	208, 217
Sse9I	AATT	4 cut(s)	11, 46, 81, 258
StyD4I	CCNGG	1 cut(s)	191
TasI	AATT	4 cut(s)	11, 46, 81, 258
TatI	WGTACW	2 cut(s)	53, 87
TscAI	CASTG	1 cut(s)	129
TseI	GCWGC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	129
XapI	RAATTY	2 cut(s)	11, 46
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.