Rorug05G0568400

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003002
Physical Location & Seq
Forward (+)
76153306 .. 76155452
2147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0568400.1

Sequence Viewer

Length: 2073 bp
ATGCTCAAGATGATGCGCAAATCAGTTCGGGGTTTCTCTTCTTGTTATTCTCATTGCAGCACAAGAGGTATGTCTTCCCTTCACTCTACTTCTCTTGTTGTTCCCCTCAACAATTACATGGCCTTGTTTCATTCTCAATCCTCAAACCCCACCAAATCTGCTGAAACCCAGCTTGTGAGTAATGTCGAGCATACCTTGAATGTGTTCCGTGAAATGCTTCACATGCGTCCTCTGCGTTCTGTTGTCTACTTCAATCAAATATTGACTCAAATGACCAAACTGAAACACTATGGGGTAGTCATTCCTCTGTTTAAGCAAATGGGTCTCATCGGAATCACTTACGATACGATGCTTTTCTTCAAACTGGGTCATCAACCAGATATCACCACCTTCGCCACTGTAATCAACGCCCTTCTTCTCCAAACTACCTCAAACCCGAATGTGAGTAATGTTGAGGATGTCTTGAAGTTGTTCCATGAAATGCTTCACTCCCGTCCTCTGCCTTCTGTTGTCCCTTTCAATCAAATCTTGACTCAACTTGTCAGACTGAAACACTACTCCACAGTCGTCTATTTGAATAGACAGATGGTTCTGACCGGAATTGCTCCTGATGTTTGTACTCTAAACATTATCATTAATTGCTTTTGCCATTTGAATCGAATTGGATTTAGCTCATCTGTCTTGGGACAATTCTTCAAACGGGGGCTTCAACCGGACGTCTGCACCTTCAACACTCTAATCAACGGCTTTGTTCTTGAAAATAGAGTGGCTGAGGCATTACTACTTTTCACAAAAATGGTGGAGGCAGGTCATTGTAAGCCCAATGTGGTTACTTTCTCCACACTAATAAAGGGCTTTTGCATGATGGGAAACAACACTGCGGCTATGCAATTACTTAGAAAGATGGAAGAAAGAGGATGCCAGCCTGAGCCTAACGTAGTGGCCTACAGCACCATCATTCACAGTCTTTTGAAGGATACACGTTATGTTGATGCAATGAAACTCTTCTCAGAAATGATTAGTAGAGGTATTGTTGCAGACGTTGTTACTTACAACTCTTTGATTCATGGAGTTTGCAATGTAGGCCAGTGGAAAGAAGCTACAATGCTGTTGAACGAAATGCTAAGTAAAGGTATCTTCCCCGATGTAGCCACCTTCAATGTCTTGGTTGATAAACTTTGTAAAGAAGGGATGGTTGTGGAAGCCGAAAGTGTGGTTGAGATAATGATTCAAAGAGGTGCTGAGCCTAATTCGATTACATATAATTTGGTTATGGACGGTTACTGTTTGCGAGGAGAAATGAACGAGGCGAGACACGTTTTTGATCTAATGGTTAGGAAGGGCTCTATGGTTAATGTTTATAGTTGTAACATATTGATAAACGGATATTGCAAGAAGAAAAAGATTGGTGAGGCCAATAAAGTTTTTAAGGAAATGCGTTGTAGGGAACTTGTTCCTAATACCGTTACTTTTAACACTCTTATTGACGGTTTTTGTAAAGCGGGGAGAATACGAGAAGCAGAAGAGCTGTTCTCTGAGATGCAAGGTTGTGGCCAACTTCCAGATGTTCAAACTTTTTCTGTTTTACTTGATGCCCTATGCAGTAGCCAACAAGTTTCTACGGCATTAGAATTGCTTAATGAGATGGAAGCCAACAAATTGGAACTCGATGTTGTAGTTTACACTGTTGTTATTGCTGGTTTGTGTAAAGCTGGAAACATTGAATCTGCAAGAGCTGTCTTCTCTGGTTTATCATCAAAAGGAGTTCAGCCAAATGTGAGGACATTTAATGTAATGATATGTGGACTCTGTAACAGAGGCCAATTTATTGAAGCAGAAAAGTTGCTGGGAGAGATGCGAGAGAAGGGCTGTTCTCCAGATGGTTGGACCTATAACATCATTATTCGAGGGTTGTTAAATAACAATGAGACATCATGGGCTATGAAATTTATTGAAGAAATGGTGGAGTTGGGTTTCTCTGCAGATACATTAACTACGGAACTGATAGTTCGTTTATTGTCCAAGGATATAGTAGATCCGGGTTTGTTGCCGTTGTTAAAAGATTCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

690

Amino Acids

77.2

Weight (kDa)

7.95

Isoelectric Point (pI)

29.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 168 - 217 3.5e-06 PPR repeat family
PPR_3 PF13812 232 - 285 6.4e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 234 - 267 6.5e-10 PPR repeat
PPR_2 PF13041 238 - 287 9.1e-15 PPR repeat family
PPR_3 PF13812 263 - 321 2.8e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 272 - 303 1.7e-11 PPR repeat
PPR_2 PF13041 274 - 309 1.1e-08 PPR repeat family
PPR PF01535 277 - 307 5.6e-06 PPR repeat
PPR_2 PF13041 311 - 360 1.4e-15 PPR repeat family
PPR_3 PF13812 334 - 390 1e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 342 - 374 1.4e-10 PPR repeat
PPR_2 PF13041 347 - 395 5.2e-18 PPR repeat family
PPR PF01535 349 - 379 1.1e-07 PPR repeat
MRP-S27 PF10037 350 - 423 2.3e-08 Mitochondrial 28S ribosomal protein S27
PPR_1 PF12854 377 - 409 5.3e-09 PPR repeat
PPR_2 PF13041 381 - 429 4.1e-13 PPR repeat family
PPR_1 PF12854 412 - 445 1.8e-08 PPR repeat
PPR_2 PF13041 416 - 465 1.6e-14 PPR repeat family
PPR PF01535 419 - 448 9.4e-07 PPR repeat
PPR_long PF17177 433 - 559 1.7e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 440 - 497 3.3e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 447 - 480 2.2e-07 PPR repeat
PPR_2 PF13041 452 - 500 2.7e-18 PPR repeat family
PPR PF01535 455 - 482 3.8e-07 PPR repeat
TPR_24 PF23276 473 - 581 1.2e-09 Fungal tetratrico peptide repeats
PPR_1 PF12854 483 - 515 4.2e-16 PPR repeat
PPR_2 PF13041 486 - 534 1.4e-18 PPR repeat family
PPR PF01535 489 - 518 1.3e-10 PPR repeat
PPR_1 PF12854 518 - 550 3.6e-06 PPR repeat
PPR_2 PF13041 529 - 570 2.9e-08 PPR repeat family
PPR_3 PF13812 545 - 600 5.1e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 554 - 581 4.1e-06 PPR repeat
PPR_2 PF13041 557 - 605 1.5e-14 PPR repeat family
PPR_1 PF12854 587 - 620 6e-10 PPR repeat
PPR PF01535 595 - 624 1.9e-08 PPR repeat
PPR_2 PF13041 595 - 639 7.1e-15 PPR repeat family
PPR_1 PF12854 622 - 655 2.3e-06 PPR repeat
PPR_2 PF13041 630 - 671 1e-05 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 720
Acc16I TGCGCA 1 cut(s) 17
Acc36I ACCTGC 1 cut(s) 797
AccI GTMKAC 1 cut(s) 246
AciI CCGC 2 cut(s) 881, 1502
AclWI GGATC 1 cut(s) 2030
AcoI YGGCCR 1 cut(s) 1552
AcsI RAATTY 1 cut(s) 1946
AcyI GRCGYC 1 cut(s) 717
AfaI GTAC 1 cut(s) 619
AflIII ACRYGT 2 cut(s) 980, 1315
AluBI AGCT 6 cut(s) 172, 672, 1100, 1528, 1712, 1736
AluI AGCT 6 cut(s) 172, 672, 1100, 1528, 1712, 1736
Alw26I GTCTC 3 cut(s) 329, 1306, 1922
AlwI GGATC 1 cut(s) 2030
AoxI GGCC 6 cut(s) 120, 942, 1084, 1413, 1552, 1819
ApeKI GCWGC 1 cut(s) 57
ApoI RAATTY 1 cut(s) 1946
AseI ATTAAT 1 cut(s) 636
Asp700I GAANNNNTTC 6 cut(s) 203, 216, 470, 483, 1004, 1452
AspLEI GCGC 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 1887
AsuC2I CCSGG 1 cut(s) 2040
AsuHPI GGTGA 2 cut(s) 376, 1421
AvaII GGWCC 1 cut(s) 1887
BalI TGGCCA 1 cut(s) 1554
BanII GRGCYC 1 cut(s) 1346
BbsI GAAGAC 2 cut(s) 66, 1732
BbvCI CCTCAGC 1 cut(s) 771
BbvI GCAGC 1 cut(s) 69
BccI CCATC 7 cut(s) 580, 859, 898, 962, 1186, 1639, 1874
BceAI ACGGC 3 cut(s) 760, 1638, 2035
BciVI GTATCC 1 cut(s) 970
BcnI CCSGG 1 cut(s) 2040
BcoDI GTCTC 3 cut(s) 329, 1306, 1922
BfmI CTRYAG 2 cut(s) 946, 1980
BfuAI ACCTGC 1 cut(s) 797
BfuI GTATCC 1 cut(s) 970
BisI GCNGC 2 cut(s) 58, 882
BlpI GCTNAGC 1 cut(s) 1242
BlsI GCNGC 2 cut(s) 59, 883
Bme1390I CCNGG 1 cut(s) 2040
Bme18I GGWCC 1 cut(s) 1887
BmgT120I GGNCC 1 cut(s) 1887
BmrFI CCNGG 1 cut(s) 2040
BmrI ACTGGG 1 cut(s) 374
BmsI GCATC 7 cut(s) 3, 339, 908, 982, 1530, 1582, 1845
BmuI ACTGGG 1 cut(s) 374
BpiI GAAGAC 2 cut(s) 66, 1732
BplI GAGNNNNNCTC 2 cut(s) 1517, 1549
BpmI CTGGAG 1 cut(s) 1860
Bpu10I CCTNAGC 2 cut(s) 771, 927
Bpu1102I GCTNAGC 1 cut(s) 1242
BpuMI CCSGG 1 cut(s) 2040
BsaHI GRCGYC 1 cut(s) 717
BsaI GGTCTC 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 2022
BsaWI WCCGGW 2 cut(s) 596, 712
Bse1I ACTGG 2 cut(s) 369, 1087
Bse3DI GCAATG 3 cut(s) 52, 1002, 1084
BseDI CCNNGG 1 cut(s) 2022
BseGI GGATG 3 cut(s) 463, 923, 1197
BseMI GCAATG 3 cut(s) 52, 1002, 1084
BseMII CTCAG 5 cut(s) 762, 918, 1023, 1233, 1527
BseNI ACTGG 2 cut(s) 369, 1087
BseRI GAGGAG 1 cut(s) 1308
BseXI GCAGC 1 cut(s) 69
BseYI CCCAGC 2 cut(s) 168, 1846
BsgI GTGCAG 1 cut(s) 706
BshFI GGCC 6 cut(s) 122, 944, 1086, 1415, 1554, 1821
BsiSI CCGG 3 cut(s) 597, 713, 2039
BslFI GGGAC 2 cut(s) 497, 699
BsmAI GTCTC 3 cut(s) 329, 1306, 1922
BsmFI GGGAC 2 cut(s) 497, 699
BsnI GGCC 6 cut(s) 122, 944, 1086, 1415, 1554, 1821
Bso31I GGTCTC 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 1346
Bsp143I GATC 2 cut(s) 1324, 2035
Bsp1720I GCTNAGC 1 cut(s) 1242
BspACI CCGC 2 cut(s) 881, 1502
BspANI GGCC 6 cut(s) 122, 944, 1086, 1415, 1554, 1821
BspCNI CTCAG 5 cut(s) 763, 919, 1022, 1234, 1528
BspHI TCATGA 1 cut(s) 2069
BspMAI CTGCAG 1 cut(s) 1984
BspMI ACCTGC 1 cut(s) 797
BspPI GGATC 1 cut(s) 2030
BspQI GCTCTTC 1 cut(s) 1518
BspTNI GGTCTC 1 cut(s) 329
BsrDI GCAATG 3 cut(s) 52, 1002, 1084
BsrI ACTGG 2 cut(s) 369, 1087
BssECI CCNNGG 1 cut(s) 2022
BssMI GATC 2 cut(s) 1324, 2035
BssNI GRCGYC 1 cut(s) 717
BssT1I CCWWGG 1 cut(s) 2022
Bst4CI ACNGT 8 cut(s) 400, 565, 965, 1280, 1286, 1465, 1490, 1687
Bst6I CTCTTC 3 cut(s) 43, 1010, 1518
BstACI GRCGYC 1 cut(s) 717
BstC8I GCNNGC 1 cut(s) 923
BstDEI CTNAG 7 cut(s) 771, 896, 927, 1009, 1124, 1242, 1536
BstF5I GGATG 3 cut(s) 463, 923, 1197
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 2 cut(s) 1327, 2038
BstMAI GTCTC 3 cut(s) 329, 1306, 1922
BstMBI GATC 2 cut(s) 1324, 2035
BstMWI GCNNNNNNNGC 3 cut(s) 223, 232, 1083
BstNSI RCATGY 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 2038
BstSFI CTRYAG 2 cut(s) 946, 1980
BstV1I GCAGC 1 cut(s) 69
BstV2I GAAGAC 2 cut(s) 66, 1732
BstX2I RGATCY 1 cut(s) 2035
BstXI CCANNNNNNTGG 2 cut(s) 1660, 1884
BstYI RGATCY 1 cut(s) 2035
BsuI GTATCC 1 cut(s) 970
BsuRI GGCC 6 cut(s) 122, 944, 1086, 1415, 1554, 1821
BtsCI GGATG 3 cut(s) 463, 923, 1197
BtsI GCAGTG 1 cut(s) 876
BtsIMutI CAGTG 4 cut(s) 396, 876, 1094, 1683
BveI ACCTGC 1 cut(s) 797
Cac8I GCNNGC 1 cut(s) 923
CciI TCATGA 1 cut(s) 2069
CfoI GCGC 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 1887
CseI GACGC 1 cut(s) 215
Csp6I GTAC 1 cut(s) 618
CspCI CAANNNNNGTGG 2 cut(s) 780, 815
CviAII CATG 7 cut(s) 118, 223, 476, 862, 1067, 1935, 2070
CviQI GTAC 1 cut(s) 618
DdeI CTNAG 7 cut(s) 771, 896, 927, 1009, 1124, 1242, 1536
DpnI GATC 2 cut(s) 1326, 2037
DpnII GATC 2 cut(s) 1324, 2035
EaeI YGGCCR 1 cut(s) 1552
Eam1104I CTCTTC 3 cut(s) 43, 1010, 1518
EarI CTCTTC 3 cut(s) 43, 1010, 1518
Eco130I CCWWGG 1 cut(s) 2022
Eco24I GRGCYC 1 cut(s) 1346
Eco31I GGTCTC 1 cut(s) 329
Eco32I GATATC 1 cut(s) 382
Eco47I GGWCC 1 cut(s) 1887
EcoRV GATATC 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 2022
EcoT38I GRGCYC 1 cut(s) 1346
ErhI CCWWGG 1 cut(s) 2022
FaeI CATG 7 cut(s) 121, 226, 479, 865, 1070, 1938, 2073
FaqI GGGAC 2 cut(s) 497, 699
FatI CATG 7 cut(s) 117, 222, 475, 861, 1066, 1934, 2069
FauI CCCGC 1 cut(s) 1495
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 58, 882
FokI GGATG 3 cut(s) 470, 930, 1204
FriOI GRGCYC 1 cut(s) 1346
Fsp4HI GCNGC 2 cut(s) 58, 882
FspI TGCGCA 1 cut(s) 17
GlaI GCGC 1 cut(s) 17
GluI GCNGC 2 cut(s) 58, 882
GsaI CCCAGC 2 cut(s) 172, 1850
GsuI CTGGAG 1 cut(s) 1860
HaeIII GGCC 6 cut(s) 122, 944, 1086, 1415, 1554, 1821
HapII CCGG 3 cut(s) 597, 713, 2039
HgaI GACGC 1 cut(s) 215
HhaI GCGC 1 cut(s) 18
Hin1I GRCGYC 1 cut(s) 717
Hin1II CATG 7 cut(s) 121, 226, 479, 865, 1070, 1938, 2073
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HinfI GANTC 9 cut(s) 265, 333, 532, 655, 1063, 1228, 1724, 1806, 2063
HpaII CCGG 3 cut(s) 597, 713, 2039
HphI GGTGA 2 cut(s) 376, 1421
Hpy166II GTNNAC 3 cut(s) 247, 1681, 1805
Hpy188I TCNGA 5 cut(s) 332, 545, 594, 1012, 1537
Hpy188III TCNNGA 8 cut(s) 7, 463, 529, 608, 755, 1562, 1877, 2070
Hpy8I GTNNAC 3 cut(s) 247, 1681, 1805
HpyCH4III ACNGT 8 cut(s) 400, 565, 965, 1280, 1286, 1465, 1490, 1687
HpyCH4IV ACGT 5 cut(s) 717, 936, 982, 1041, 1317
HpyF10VI GCNNNNNNNGC 3 cut(s) 223, 232, 1083
HpyF3I CTNAG 7 cut(s) 771, 896, 927, 1009, 1124, 1242, 1536
HpySE526I ACGT 5 cut(s) 717, 936, 982, 1041, 1317
Hsp92I GRCGYC 1 cut(s) 717
Hsp92II CATG 7 cut(s) 121, 226, 479, 865, 1070, 1938, 2073
HspAI GCGC 1 cut(s) 16
Kzo9I GATC 2 cut(s) 1324, 2035
LguI GCTCTTC 1 cut(s) 1518
LmnI GCTCC 1 cut(s) 610
Lsp1109I GCAGC 1 cut(s) 69
LweI GCATC 7 cut(s) 3, 339, 908, 982, 1530, 1582, 1845
MaeII ACGT 5 cut(s) 717, 936, 982, 1041, 1317
MaeIII GTNAC 6 cut(s) 829, 1045, 1280, 1367, 1465, 1811
MalI GATC 2 cut(s) 1326, 2037
MboI GATC 2 cut(s) 1324, 2035
MflI RGATCY 1 cut(s) 2035
MhlI GDGCHC 1 cut(s) 1346
MlsI TGGCCA 1 cut(s) 1554
MluNI TGGCCA 1 cut(s) 1554
MlyI GAGTC 3 cut(s) 259, 526, 1800
MmeI TCCRAC 1 cut(s) 1865
Mox20I TGGCCA 1 cut(s) 1554
MroXI GAANNNNTTC 6 cut(s) 203, 216, 470, 483, 1004, 1452
MscI TGGCCA 1 cut(s) 1554
MslI CAYNNNNRTG 1 cut(s) 794
Msp20I TGGCCA 1 cut(s) 1554
MspI CCGG 3 cut(s) 597, 713, 2039
MspR9I CCNGG 1 cut(s) 2040
MwoI GCNNNNNNNGC 3 cut(s) 223, 232, 1083
NciI CCSGG 1 cut(s) 2040
NdeII GATC 2 cut(s) 1324, 2035
NlaIII CATG 7 cut(s) 121, 226, 479, 865, 1070, 1938, 2073
NsbI TGCGCA 1 cut(s) 17
NspI RCATGY 1 cut(s) 226
PagI TCATGA 1 cut(s) 2069
PciSI GCTCTTC 1 cut(s) 1518
PdmI GAANNNNTTC 6 cut(s) 203, 216, 470, 483, 1004, 1452
PfeI GAWTC 6 cut(s) 333, 655, 1063, 1228, 1724, 2063
PkrI GCNGC 2 cut(s) 59, 883
PleI GAGTC 3 cut(s) 259, 526, 1800
PpsI GAGTC 3 cut(s) 259, 526, 1800
PshBI ATTAAT 1 cut(s) 636
PspFI CCCAGC 2 cut(s) 168, 1846
PspPI GGNCC 1 cut(s) 1887
PstI CTGCAG 1 cut(s) 1984
PsuI RGATCY 1 cut(s) 2035
RsaI GTAC 1 cut(s) 619
RsaNI GTAC 1 cut(s) 618
RseI CAYNNNNRTG 1 cut(s) 794
SapI GCTCTTC 1 cut(s) 1518
SatI GCNGC 2 cut(s) 58, 882
Sau3AI GATC 2 cut(s) 1324, 2035
Sau96I GGNCC 1 cut(s) 1887
SchI GAGTC 3 cut(s) 259, 526, 1800
ScrFI CCNGG 1 cut(s) 2040
SduI GDGCHC 1 cut(s) 1346
SfaNI GCATC 7 cut(s) 3, 339, 908, 982, 1530, 1582, 1845
SfcI CTRYAG 2 cut(s) 946, 1980
SinI GGWCC 1 cut(s) 1887
SmiMI CAYNNNNRTG 1 cut(s) 794
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
SsiI CCGC 2 cut(s) 881, 1502
SspI AATATT 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 2038
StyI CCWWGG 1 cut(s) 2022
TaaI ACNGT 8 cut(s) 400, 565, 965, 1280, 1286, 1465, 1490, 1687
TaiI ACGT 5 cut(s) 720, 939, 985, 1044, 1320
TaqI TCGA 5 cut(s) 186, 658, 1253, 1668, 1906
TatI WGTACW 1 cut(s) 617
TauI GCSGC 1 cut(s) 884
TfiI GAWTC 6 cut(s) 333, 655, 1063, 1228, 1724, 2063
TscAI CASTG 4 cut(s) 403, 883, 1094, 1690
TseI GCWGC 1 cut(s) 57
TspDTI ATGAA 7 cut(s) 119, 492, 1013, 1055, 1316, 1958, 2055
TspGWI ACGGA 3 cut(s) 197, 1398, 2012
TspRI CASTG 4 cut(s) 403, 883, 1094, 1690
VpaK11BI GGWCC 1 cut(s) 1887
VspI ATTAAT 1 cut(s) 636
XapI RAATTY 1 cut(s) 1946
XceI RCATGY 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 246
XmnI GAANNNNTTC 6 cut(s) 203, 216, 470, 483, 1004, 1452
ZraI GACGTC 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.