Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003002

Physical Location & Seq

Genomic Coordinates Forward (+)

30341610 .. 30344195

Gene Structure 2586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00352930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGATTGAGTTTATTGCAAAAATCTCAACTCTTCTCCGTGTTCTTCTCTTGGACTATCGGATTTCGCGACACGGGTTGGGTGCATCGACATTGTGTGTTTGGTGGAGGACAAAGATTCGCGACTCGATTGTGATTTTTAATCATAAAATTCAGGTGCTCATTATTGTTGCAAAGTGTGCTGGACTGAACGTGTTCTCTGATTTAAATTGGATTGAATGTGTTTTCTGTAGGCAGCAAATCCAGGCTCCAGCTAATTTAAATGTTTCTTTCAAAGGGCATACACCAAATGCTTTAACAAGTTTGATTATTGTAAATGAATCATTTCACTGGGGGTCTCTTGGATGTGACTTATGTGCAGGTCCTCCATCTATGTTTCAAAAATTCAGCTACAAGGAGATAAAGAAGGTGACAGAAAATTTCAGTTCTACCATTGGACAAGGGGGATTTGGAACTGTGTACAAAGCTCACTTTAGTAATGGTTTAGTGGCAGCAGTGAAGCAGATGAATAAAGTTTCCGAGCACGGGGAGCATGAGTTCTGCAGAGAGATAGTGCTTCTTGCCAGGTTGCATCATCGGCATCTTGTTTCTCTTAGGGGTTTCTGCATTGAGAAACATAAGAGTTCCGATCGAACTCCACCTCCGCAACCACGAAAAGCTCCTCAACTCCATTCGTCACCATCTCTCGGTCCTCACTCCCATCTCTCACGCTCTCCGTCTCGAGCTCCAGCTCGGTTGCAAGTTCAGCTCCAACTCGGTTGCAAGTTTAGCTCCGGCTCGGTTGCGGTTCAGCTCCGGTTCGGATTGCGATTCCGGCTTCGGTTCGGTTCTGCAGTTCCGGCTTCAATTCGGTTCTACGGTTCCGGTTCCGGTTCAAGTTGGTTTGTCTTGATGTTGAGTTCTTCTCTTCTTATCTCGAACTGCAGACGGTTATTTAACTCCTCCACTCATTCACACCGTTTCCAAGCACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

323

Amino Acids

36.1

Weight (kDa)

10.28

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	140 - 205	3.1e-09	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	141 - 205	3.1e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49730 AT1G49730 AT1G49730 AT1G49730 AT1G49730 AT3G19300
fragaria_vesca	FvH4_2g05840 FvH4_2g05840 FvH4_2g05840 FvH4_2g05840 FvH4_2g05840
malus_domestica	MD05G1082700.v1.1
prunus_persica	Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1
pyrus_communis	pycom05g07770
rosa_chinensis	RchiOBHm_Chr4g0408511 RchiOBHm_Chr6g0257781
rosa_laevigata	RLG00000014723 RLG00000014972
rosa_multiflora	Rmu_co8277925.1_g000001 Rmu_co8468953.1_g000001 Rmu_sc0003520.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352930 Rroxscaffold_7G00208940
rosa_rugosa	Rorug05G0568100 Rorug05G0568200 Rorug05G0568300 Rorug05G0568400
rosa_samantha	Rh2AG563700 Rh6AG085100 Rh6AG085200 Rh6BG079500 Rh6CG074500 Rh6DG071400
rosa_wichuraiana	Rw6G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	347
AccII	CGCG	2 cut(s)	67, 120
AciI	CCGC	2 cut(s)	641, 782
AcsI	RAATTY	3 cut(s)	147, 380, 415
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	2 cut(s)	522, 683
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	5 cut(s)	215, 271, 377, 843, 873
AjnI	CCWGG	2 cut(s)	240, 560
AloI	GAACNNNNNNTCC	4 cut(s)	518, 550, 622, 654
AluBI	AGCT	9 cut(s)	251, 387, 464, 656, 722, 728, 745, 768, 790
AluI	AGCT	9 cut(s)	251, 387, 464, 656, 722, 728, 745, 768, 790
Alw21I	GWGCWC	3 cut(s)	159, 522, 724
Alw26I	GTCTC	2 cut(s)	339, 720
Ama87I	CYCGRG	1 cut(s)	717
ApeKI	GCWGC	2 cut(s)	232, 488
ApoI	RAATTY	3 cut(s)	147, 380, 415
Asp700I	GAANNNNTTC	2 cut(s)	191, 321
AspS9I	GGNCC	2 cut(s)	359, 686
AsuHPI	GGTGA	2 cut(s)	418, 666
AvaI	CYCGRG	1 cut(s)	717
AvaII	GGWCC	2 cut(s)	359, 686
BanII	GRGCYC	1 cut(s)	724
Bbv12I	GWGCWC	3 cut(s)	159, 522, 724
BbvI	GCAGC	2 cut(s)	244, 500
BccI	CCATC	3 cut(s)	373, 685, 705
BciT130I	CCWGG	2 cut(s)	242, 562
BcoDI	GTCTC	2 cut(s)	339, 720
BfmI	CTRYAG	4 cut(s)	226, 538, 828, 919
BfuAI	ACCTGC	1 cut(s)	347
BisI	GCNGC	2 cut(s)	233, 489
BlsI	GCNGC	2 cut(s)	234, 490
Bme1390I	CCNGG	2 cut(s)	242, 562
Bme18I	GGWCC	2 cut(s)	359, 686
BmeT110I	CYCGRG	1 cut(s)	717
BmgT120I	GGNCC	2 cut(s)	359, 686
BmiI	GGNNCC	3 cut(s)	246, 859, 865
BmrFI	CCNGG	2 cut(s)	242, 562
BmrI	ACTGGG	1 cut(s)	337
BmsI	GCATC	3 cut(s)	92, 577, 586
BmuI	ACTGGG	1 cut(s)	337
BplI	GAGNNNNNCTC	2 cut(s)	886, 918
BpmI	CTGGAG	2 cut(s)	231, 708
BsaI	GGTCTC	1 cut(s)	339
BsaWI	WCCGGW	3 cut(s)	792, 860, 866
BsaXI	ACNNNNNCTCC	4 cut(s)	518, 548, 622, 652
Bsc4I	CCNNNNNNNGG	2 cut(s)	522, 683
Bse1I	ACTGG	1 cut(s)	332
BseBI	CCWGG	2 cut(s)	242, 562
BseGI	GGATG	1 cut(s)	347
BseLI	CCNNNNNNNGG	2 cut(s)	522, 683
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	2 cut(s)	648, 928
BseXI	GCAGC	2 cut(s)	244, 500
BsgI	GTGCAG	1 cut(s)	375
Bsh1236I	CGCG	2 cut(s)	67, 120
Bsh1285I	CGRYCG	1 cut(s)	628
BsiEI	CGRYCG	1 cut(s)	628
BsiHKAI	GWGCWC	3 cut(s)	159, 522, 724
BsiHKCI	CYCGRG	1 cut(s)	717
BsiSI	CCGG	6 cut(s)	771, 793, 811, 836, 861, 867
BslI	CCNNNNNNNGG	2 cut(s)	522, 683
BsmAI	GTCTC	2 cut(s)	339, 720
BsmBI	CGTCTC	1 cut(s)	720
Bso31I	GGTCTC	1 cut(s)	339
BsoBI	CYCGRG	1 cut(s)	717
Bsp1286I	GDGCHC	3 cut(s)	159, 522, 724
Bsp1407I	TGTACA	1 cut(s)	456
Bsp143I	GATC	1 cut(s)	625
Bsp68I	TCGCGA	2 cut(s)	67, 120
BspACI	CCGC	2 cut(s)	641, 782
BspFNI	CGCG	2 cut(s)	67, 120
BspLI	GGNNCC	3 cut(s)	246, 859, 865
BspMAI	CTGCAG	3 cut(s)	542, 832, 923
BspMI	ACCTGC	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	339
BsrGI	TGTACA	1 cut(s)	456
BsrI	ACTGG	1 cut(s)	332
BssMI	GATC	1 cut(s)	625
Bst2UI	CCWGG	2 cut(s)	242, 562
Bst4CI	ACNGT	4 cut(s)	454, 857, 927, 956
Bst6I	CTCTTC	2 cut(s)	36, 909
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstAUI	TGTACA	1 cut(s)	456
BstDEI	CTNAG	1 cut(s)	590
BstF5I	GGATG	1 cut(s)	347
BstFNI	CGCG	2 cut(s)	67, 120
BstKTI	GATC	1 cut(s)	628
BstMAI	GTCTC	2 cut(s)	339, 720
BstMBI	GATC	1 cut(s)	625
BstMCI	CGRYCG	1 cut(s)	628
BstMWI	GCNNNNNNNGC	7 cut(s)	176, 526, 574, 742, 765, 811, 836
BstNI	CCWGG	2 cut(s)	242, 562
BstSCI	CCNGG	2 cut(s)	240, 560
BstSFI	CTRYAG	4 cut(s)	226, 538, 828, 919
BstUI	CGCG	2 cut(s)	67, 120
BstV1I	GCAGC	2 cut(s)	244, 500
BtsCI	GGATG	1 cut(s)	347
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	2 cut(s)	325, 498
BtuMI	TCGCGA	2 cut(s)	67, 120
BveI	ACCTGC	1 cut(s)	347
Cfr13I	GGNCC	2 cut(s)	359, 686
Csp6I	GTAC	1 cut(s)	457
CviAII	CATG	1 cut(s)	530
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	1 cut(s)	590
DpnI	GATC	1 cut(s)	627
DpnII	GATC	1 cut(s)	625
DraI	TTTAAA	2 cut(s)	204, 258
Eam1104I	CTCTTC	2 cut(s)	36, 909
EarI	CTCTTC	2 cut(s)	36, 909
Ecl136II	GAGCTC	1 cut(s)	722
Eco24I	GRGCYC	1 cut(s)	724
Eco31I	GGTCTC	1 cut(s)	339
Eco47I	GGWCC	2 cut(s)	359, 686
Eco53kI	GAGCTC	1 cut(s)	722
Eco88I	CYCGRG	1 cut(s)	717
EcoICRI	GAGCTC	1 cut(s)	722
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRII	CCWGG	2 cut(s)	240, 560
EcoT38I	GRGCYC	1 cut(s)	724
Esp3I	CGTCTC	1 cut(s)	720
FaeI	CATG	1 cut(s)	533
FaiI	YATR	6 cut(s)	144, 279, 352, 371, 531, 615
FatI	CATG	1 cut(s)	529
Fnu4HI	GCNGC	2 cut(s)	233, 489
FokI	GGATG	1 cut(s)	354
FriOI	GRGCYC	1 cut(s)	724
Fsp4HI	GCNGC	2 cut(s)	233, 489
GluI	GCNGC	2 cut(s)	233, 489
GsuI	CTGGAG	2 cut(s)	231, 708
HapII	CCGG	6 cut(s)	771, 793, 811, 836, 861, 867
Hin1II	CATG	1 cut(s)	533
HinfI	GANTC	4 cut(s)	115, 122, 317, 807
HpaII	CCGG	6 cut(s)	771, 793, 811, 836, 861, 867
HphI	GGTGA	2 cut(s)	418, 666
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	5 cut(s)	60, 199, 517, 625, 800
Hpy188III	TCNNGA	5 cut(s)	66, 119, 717, 886, 913
Hpy8I	GTNNAC	1 cut(s)	457
HpyAV	CCTTC	1 cut(s)	397
HpyCH4III	ACNGT	4 cut(s)	454, 857, 927, 956
HpyCH4IV	ACGT	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	7 cut(s)	176, 526, 574, 742, 765, 811, 836
HpyF3I	CTNAG	1 cut(s)	590
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	533
Kzo9I	GATC	1 cut(s)	625
LmnI	GCTCC	7 cut(s)	250, 526, 661, 727, 750, 773, 795
Lsp1109I	GCAGC	2 cut(s)	244, 500
LweI	GCATC	3 cut(s)	92, 577, 586
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	3 cut(s)	344, 406, 672
MalI	GATC	1 cut(s)	627
MboI	GATC	1 cut(s)	625
MboII	GAAGA	4 cut(s)	23, 35, 891, 896
MhlI	GDGCHC	3 cut(s)	159, 522, 724
MluCI	AATT	6 cut(s)	147, 205, 253, 380, 415, 843
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	772
MnlI	CCTC	6 cut(s)	99, 372, 648, 669, 699, 949
MroXI	GAANNNNTTC	2 cut(s)	191, 321
MseI	TTAA	5 cut(s)	138, 203, 257, 293, 933
MspI	CCGG	6 cut(s)	771, 793, 811, 836, 861, 867
MspR9I	CCNGG	2 cut(s)	242, 562
MvaI	CCWGG	2 cut(s)	242, 562
MvnI	CGCG	2 cut(s)	67, 120
MwoI	GCNNNNNNNGC	7 cut(s)	176, 526, 574, 742, 765, 811, 836
NdeII	GATC	1 cut(s)	625
NlaIII	CATG	1 cut(s)	533
NlaIV	GGNNCC	3 cut(s)	246, 859, 865
NmuCI	GTSAC	3 cut(s)	344, 406, 672
NruI	TCGCGA	2 cut(s)	67, 120
PaeR7I	CTCGAG	1 cut(s)	717
PcsI	WCGNNNNNNNCGW	1 cut(s)	64
PdmI	GAANNNNTTC	2 cut(s)	191, 321
PfeI	GAWTC	3 cut(s)	115, 317, 807
PkrI	GCNGC	2 cut(s)	234, 490
Ple19I	CGATCG	1 cut(s)	628
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PpuMI	RGGWCCY	1 cut(s)	359
Psp124BI	GAGCTC	1 cut(s)	724
Psp5II	RGGWCCY	1 cut(s)	359
Psp6I	CCWGG	2 cut(s)	240, 560
PspGI	CCWGG	2 cut(s)	240, 560
PspN4I	GGNNCC	3 cut(s)	246, 859, 865
PspPI	GGNCC	2 cut(s)	359, 686
PspPPI	RGGWCCY	1 cut(s)	359
PstI	CTGCAG	3 cut(s)	542, 832, 923
PvuI	CGATCG	1 cut(s)	628
RruI	TCGCGA	2 cut(s)	67, 120
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
SacI	GAGCTC	1 cut(s)	724
SaqAI	TTAA	5 cut(s)	138, 203, 257, 293, 933
SatI	GCNGC	2 cut(s)	233, 489
Sau3AI	GATC	1 cut(s)	625
Sau96I	GGNCC	2 cut(s)	359, 686
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	242, 562
SduI	GDGCHC	3 cut(s)	159, 522, 724
SfaNI	GCATC	3 cut(s)	92, 577, 586
SfcI	CTRYAG	4 cut(s)	226, 538, 828, 919
Sfr274I	CTCGAG	1 cut(s)	717
SinI	GGWCC	2 cut(s)	359, 686
SlaI	CTCGAG	1 cut(s)	717
SmiI	ATTTAAAT	2 cut(s)	204, 258
SmlI	CTYRAG	1 cut(s)	717
SmoI	CTYRAG	1 cut(s)	717
Sse9I	AATT	6 cut(s)	147, 205, 253, 380, 415, 843
SsiI	CCGC	2 cut(s)	641, 782
SstI	GAGCTC	1 cut(s)	724
StyD4I	CCNGG	2 cut(s)	240, 560
SwaI	ATTTAAAT	2 cut(s)	204, 258
TaaI	ACNGT	4 cut(s)	454, 857, 927, 956
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	5 cut(s)	86, 125, 628, 718, 914
TaqII	GACCGA	1 cut(s)	674
TasI	AATT	6 cut(s)	147, 205, 253, 380, 415, 843
TatI	WGTACW	1 cut(s)	456
TfiI	GAWTC	3 cut(s)	115, 317, 807
Tru1I	TTAA	5 cut(s)	138, 203, 257, 293, 933
Tru9I	TTAA	5 cut(s)	138, 203, 257, 293, 933
TscAI	CASTG	2 cut(s)	332, 498
TseFI	GTSAC	3 cut(s)	344, 406, 672
TseI	GCWGC	2 cut(s)	232, 488
Tsp45I	GTSAC	3 cut(s)	344, 406, 672
TspDTI	ATGAA	2 cut(s)	330, 518
TspGWI	ACGGA	2 cut(s)	26, 702
TspRI	CASTG	2 cut(s)	332, 498
VpaK11BI	GGWCC	2 cut(s)	359, 686
XapI	RAATTY	3 cut(s)	147, 380, 415
XhoI	CTCGAG	1 cut(s)	717
XmnI	GAANNNNTTC	2 cut(s)	191, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.