Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003002

Physical Location & Seq

Genomic Coordinates Reverse (-)

60120269 .. 60123582

Gene Structure 3314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014972

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGATATTGTGGAGCCATATGGATTTTGGTCAATTTGTTTGGGTTTTTACATCAAAAGTGAATGGGTCTGAAGCTAAGGATTTATTGCTGGGTATTTGGCAGCAAATCCAGGCTCCAGCTAATTTAAATGTTTCTTTCAAAGGGCATACACCAAATGCTTTCACAAGTTTGATTGTTATGTACCATCTATGTCCTCCATCTATGTTTCAAAAATTCAGCTACAAGGAGATAAAGAAGGCGACAGAAAATTTCAGTACTACCATTGGACAAGGGGGATTTGGAACTGTGTACAAAGCTCACTTTAGTAATGGTTTAGTGGCAGCAGTGAAGCAGATGAATAAAGTTTCCAAGCAGGGGGAGCATGAGTTCTGCAGAGAGATAGTGCTTCTTGCCAGGTTGCATCATCGGCATCTTGTTTCTCTTAGGGGTTTCTGCACTGAGAACATAAGAGCTCGGCTTGCGGTGGAGTTCATTTTTGGCTCAGCATGTATTCGCTTTGTTGAGTGCACAAGAGGGACTTACTGGGTTGTTAGCCAGGTTGAATATCCCTCATTGGTTGATCTGTGGGGACTTCTTCTGGATTTGGTTGCTCAGCTATTAGGTGCCTTATCTCGCATCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

208

Amino Acids

23.44

Weight (kDa)

9.3

Isoelectric Point (pI)

29.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	84 - 161	9.2e-11	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	86 - 162	5.2e-11	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49730 AT1G49730 AT1G49730 AT1G49730 AT1G49730 AT3G19300
fragaria_vesca	FvH4_2g05840 FvH4_2g05840 FvH4_2g05840 FvH4_2g05840 FvH4_2g05840
malus_domestica	MD05G1082700.v1.1
prunus_persica	Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1
pyrus_communis	pycom05g07770
rosa_chinensis	RchiOBHm_Chr4g0408511 RchiOBHm_Chr6g0257781
rosa_laevigata	RLG00000014723 RLG00000014972
rosa_multiflora	Rmu_co8277925.1_g000001 Rmu_co8468953.1_g000001 Rmu_sc0003520.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352930 Rroxscaffold_7G00208940
rosa_rugosa	Rorug05G0568100 Rorug05G0568200 Rorug05G0568300 Rorug05G0568400
rosa_samantha	Rh2AG563700 Rh6AG085100 Rh6AG085200 Rh6BG079500 Rh6CG074500 Rh6DG071400
rosa_wichuraiana	Rw6G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	602
AciI	CCGC	1 cut(s)	461
AcsI	RAATTY	2 cut(s)	212, 247
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	3 cut(s)	182, 256, 290
AfiI	CCNNNNNNNGG	1 cut(s)	354
AgsI	TTSAA	3 cut(s)	139, 209, 542
AjnI	CCWGG	3 cut(s)	108, 392, 534
AloI	GAACNNNNNNTCC	2 cut(s)	350, 382
AluBI	AGCT	6 cut(s)	74, 119, 219, 296, 452, 595
AluI	AGCT	6 cut(s)	74, 119, 219, 296, 452, 595
Alw21I	GWGCWC	2 cut(s)	454, 509
Alw44I	GTGCAC	1 cut(s)	505
ApaLI	GTGCAC	1 cut(s)	505
ApeKI	GCWGC	2 cut(s)	100, 320
ApoI	RAATTY	2 cut(s)	212, 247
BaeGI	GKGCMC	1 cut(s)	509
BanI	GGYRCC	1 cut(s)	602
BanII	GRGCYC	1 cut(s)	454
Bbv12I	GWGCWC	2 cut(s)	454, 509
BbvI	GCAGC	2 cut(s)	112, 332
BccI	CCATC	2 cut(s)	192, 205
BciT130I	CCWGG	3 cut(s)	110, 394, 536
BfmI	CTRYAG	1 cut(s)	370
BisI	GCNGC	2 cut(s)	101, 321
BlpI	GCTNAGC	2 cut(s)	481, 591
BlsI	GCNGC	2 cut(s)	102, 322
BmcAI	AGTACT	1 cut(s)	256
Bme1390I	CCNGG	3 cut(s)	110, 394, 536
BmiI	GGNNCC	3 cut(s)	14, 114, 604
BmrFI	CCNGG	3 cut(s)	110, 394, 536
BmrI	ACTGGG	1 cut(s)	532
BmsI	GCATC	2 cut(s)	409, 418
BmuI	ACTGGG	1 cut(s)	532
BpmI	CTGGAG	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	75
Bpu1102I	GCTNAGC	2 cut(s)	481, 591
BsaXI	ACNNNNNCTCC	2 cut(s)	350, 380
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
Bse1I	ACTGG	1 cut(s)	527
BseBI	CCWGG	3 cut(s)	110, 394, 536
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseMII	CTCAG	3 cut(s)	429, 495, 605
BseNI	ACTGG	1 cut(s)	527
BseSI	GKGCMC	1 cut(s)	509
BseXI	GCAGC	2 cut(s)	112, 332
BseYI	CCCAGC	1 cut(s)	88
BsgI	GTGCAG	1 cut(s)	418
BshNI	GGYRCC	1 cut(s)	602
BsiHKAI	GWGCWC	2 cut(s)	454, 509
BslFI	GGGAC	2 cut(s)	529, 582
BslI	CCNNNNNNNGG	1 cut(s)	354
BsmFI	GGGAC	2 cut(s)	529, 582
Bsp1286I	GDGCHC	2 cut(s)	454, 509
Bsp1407I	TGTACA	1 cut(s)	288
Bsp143I	GATC	1 cut(s)	559
Bsp1720I	GCTNAGC	2 cut(s)	481, 591
BspACI	CCGC	1 cut(s)	461
BspCNI	CTCAG	3 cut(s)	430, 494, 604
BspLI	GGNNCC	3 cut(s)	14, 114, 604
BspMAI	CTGCAG	1 cut(s)	374
BspT107I	GGYRCC	1 cut(s)	602
BsrGI	TGTACA	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	527
BssMI	GATC	1 cut(s)	559
Bst2UI	CCWGG	3 cut(s)	110, 394, 536
Bst4CI	ACNGT	1 cut(s)	286
BstAUI	TGTACA	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	5 cut(s)	75, 422, 438, 481, 591
BstKTI	GATC	1 cut(s)	562
BstMBI	GATC	1 cut(s)	559
BstMWI	GCNNNNNNNGC	3 cut(s)	358, 406, 458
BstNI	CCWGG	3 cut(s)	110, 394, 536
BstNSI	RCATGY	1 cut(s)	489
BstSCI	CCNGG	3 cut(s)	108, 392, 534
BstSFI	CTRYAG	1 cut(s)	370
BstSLI	GKGCMC	1 cut(s)	509
BstV1I	GCAGC	2 cut(s)	112, 332
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	2 cut(s)	330, 435
Cac8I	GCNNGC	1 cut(s)	459
Csp6I	GTAC	3 cut(s)	181, 255, 289
CviAII	CATG	2 cut(s)	362, 486
CviQI	GTAC	3 cut(s)	181, 255, 289
DdeI	CTNAG	5 cut(s)	75, 422, 438, 481, 591
DpnI	GATC	1 cut(s)	561
DpnII	GATC	1 cut(s)	559
DraI	TTTAAA	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	452
Eco24I	GRGCYC	1 cut(s)	454
Eco53kI	GAGCTC	1 cut(s)	452
Eco57I	CTGAAG	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	452
EcoRII	CCWGG	3 cut(s)	108, 392, 534
EcoT38I	GRGCYC	1 cut(s)	454
FaeI	CATG	2 cut(s)	365, 489
FaiI	YATR	9 cut(s)	18, 20, 147, 179, 190, 203, 363, 446, 487
FalI	AAGNNNNNCTT	2 cut(s)	502, 534
FaqI	GGGAC	2 cut(s)	529, 582
FatI	CATG	2 cut(s)	361, 485
FauNDI	CATATG	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	101, 321
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	2 cut(s)	101, 321
GluI	GCNGC	2 cut(s)	101, 321
GsaI	CCCAGC	1 cut(s)	92
GsuI	CTGGAG	1 cut(s)	99
Hin1II	CATG	2 cut(s)	365, 489
Hpy166II	GTNNAC	2 cut(s)	289, 507
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	1 cut(s)	578
Hpy8I	GTNNAC	2 cut(s)	289, 507
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	4 cut(s)	372, 400, 435, 507
HpyF10VI	GCNNNNNNNGC	3 cut(s)	358, 406, 458
HpyF3I	CTNAG	5 cut(s)	75, 422, 438, 481, 591
Hsp92II	CATG	2 cut(s)	365, 489
Kzo9I	GATC	1 cut(s)	559
LmnI	GCTCC	3 cut(s)	12, 118, 358
Lsp1109I	GCAGC	2 cut(s)	112, 332
LweI	GCATC	2 cut(s)	409, 418
MalI	GATC	1 cut(s)	561
MboI	GATC	1 cut(s)	559
MboII	GAAGA	1 cut(s)	566
MhlI	GDGCHC	2 cut(s)	454, 509
MluCI	AATT	4 cut(s)	32, 121, 212, 247
MnlI	CCTC	3 cut(s)	204, 506, 559
MseI	TTAA	1 cut(s)	125
MspR9I	CCNGG	3 cut(s)	110, 394, 536
MvaI	CCWGG	3 cut(s)	110, 394, 536
MwoI	GCNNNNNNNGC	3 cut(s)	358, 406, 458
NdeI	CATATG	1 cut(s)	18
NdeII	GATC	1 cut(s)	559
NlaIII	CATG	2 cut(s)	365, 489
NlaIV	GGNNCC	3 cut(s)	14, 114, 604
NmeAIII	GCCGAG	1 cut(s)	433
NspI	RCATGY	1 cut(s)	489
PkrI	GCNGC	2 cut(s)	102, 322
Psp124BI	GAGCTC	1 cut(s)	454
Psp6I	CCWGG	3 cut(s)	108, 392, 534
PspFI	CCCAGC	1 cut(s)	88
PspGI	CCWGG	3 cut(s)	108, 392, 534
PspN4I	GGNNCC	3 cut(s)	14, 114, 604
PstI	CTGCAG	1 cut(s)	374
RsaI	GTAC	3 cut(s)	182, 256, 290
RsaNI	GTAC	3 cut(s)	181, 255, 289
SacI	GAGCTC	1 cut(s)	454
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	2 cut(s)	101, 321
Sau3AI	GATC	1 cut(s)	559
ScaI	AGTACT	1 cut(s)	256
ScrFI	CCNGG	3 cut(s)	110, 394, 536
SduI	GDGCHC	2 cut(s)	454, 509
SfaNI	GCATC	2 cut(s)	409, 418
SfcI	CTRYAG	1 cut(s)	370
SmiI	ATTTAAAT	1 cut(s)	126
Sse9I	AATT	4 cut(s)	32, 121, 212, 247
SsiI	CCGC	1 cut(s)	461
SstI	GAGCTC	1 cut(s)	454
StyD4I	CCNGG	3 cut(s)	108, 392, 534
SwaI	ATTTAAAT	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	286
TasI	AATT	4 cut(s)	32, 121, 212, 247
TatI	WGTACW	2 cut(s)	254, 288
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TscAI	CASTG	2 cut(s)	330, 442
TseI	GCWGC	2 cut(s)	100, 320
TspDTI	ATGAA	2 cut(s)	350, 460
TspRI	CASTG	2 cut(s)	330, 442
VneI	GTGCAC	1 cut(s)	505
XapI	RAATTY	2 cut(s)	212, 247
XceI	RCATGY	1 cut(s)	489
XcmI	CCANNNNNNNNNTGG	1 cut(s)	23
ZrmI	AGTACT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.