Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003002

Physical Location & Seq

Genomic Coordinates Forward (+)

76143205 .. 76145279

Gene Structure 2075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0568300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1782 bp

ATGAAAGAGGATAATTCATCTTCTTTTTATTCAATGCAGCTTGATGAGGATGATATGATCACAAATATTTTTTGGGCAGATGAGCGTTCAATAAGTGATTATGGTCTTTTTGGGGATGTCGTTTGTTTTGACACAACTTATCAAACTAATGAATATGGTAGACCATTTGCTCCATTTGTTGGGGTCAATCATCATAAGCAAATAGTGGTGTTTGGTGCAACTCTATTATATGACGAAACCATTGAGTCCTTTAAGTGGCTTTTTGAGACTTTTCTTGGAGCGATGTCTGGAAAGCAACCAAAGACCATACTTACAGACCAATATGCAGCAATTGCTAGTGCAATAGCAGAAGTATTTCCTGTCACTTATCATAGACTATGTATTTGGCATATTTACCAAAATGCTGCAAAGAGATTGAGTCATGTGTTTCACGGATCACAACAATTTGCTCATGATTTTGGAAAGTGTGTATATGACTATGAGGATGAAGATGATTGGTTATTAGCATGGAATAATATGCTCGAGAAGCACAATTTGAAGGAGGATAAATGGTTAAAGAATTTGTTTGATGTGAGAGAAAAATGGGCATTGGTATACGGGCGACATACTTTTACTGCAGATATGATGAGTACACAACGTAGTGAGAGTATGAATAATATTTTGAAAAAATACTTGAAGCCTAGTTATGACCTGTTGTGCTTCTTTGAACACTATGAGAGAGTTTTGGCTGATCGAAGATATGAAGAATTAATTGCTGACTTCAAGATGATGCAAACTTCTCCTGTGTTATCTGCTAACGTAGAGATGTTGCAACATGCAGAGGAGGTGTATACCCCAGAAGCTTTTAGACTCTTCCAGCAACAATACACAAGTATTGGTGATTATGTTGCTAATAAAGTTAGCAAGTCTGAGATGCAATATGAATACAAAGTATCTTATTGTGGTGTTGCTCGAGAGCATTTGGTAAAATTTGATGCTTCAATGCAAACAATAACTTGTAGTTGCATGAAGTTTAATTTTGTTGGGATTTTATGCCGTCATGCAATGAAAGTGTTGGATAGGAAGAATGTGAGAAGAATCCCTCCTACTTGCATATTAAATCGATGGAGTAAAGAAGCTAAGGTAAGGAGCATCACTAGTTATCATGGACCAAAGACTAATGAAAATCTGAAGCAGTCGATTGGAAAGCGATACAGCCATTTGTGTCGTAATTATCGTGAGATTGCATCCTTTGCCTCAGAACATGAGGATCTAACAAGGTATGCAAATGAATATGCCATTGAGTTGCTTAAAAATTTGGAAGAAAAGAAGAAGAAATTGTTGAAAGAAGATGCATGGGTGATTCAAACATCAGATGTTGGAGCTTTAGAAGGTGAAGTATCAAATGCACGTGGAGTTAAAAGAAAAGCTACTGTTGGACGACCACGCGGTCGTCATGGTAGATTTAAAGGTGTTCTTGAAGGGAAGAGTTGTAAAGCCACATCTAAAGCATCAACATCTCTAGCAAGTAAAGCCGCAGCAAAGAAACAACTATCCTTCCAGGACTCTATTCCTACTAGTGACAATTGCGAGCAACAAGAAGTCAATGAATATGAAGTTCTAATGCTTGATTCAGCAACTCAAGAGTCCAATCTTAGTGCTGGTACCCAAGTATCAGTTTATGGCACAGGTCTAACTTTGCAGAACGACTTTTCTTTCACTCAAATGCTCCAGGAAATTTCAATGAATCATATTTGCTCTTCACAAAGCAATGAAGGAGGCAAAGAGCAGTCTAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

593

Amino Acids

68.26

Weight (kDa)

6.54

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZSWIM1-3_RNaseH-like	PF21056	3 - 120	2e-09	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE	PF10551	40 - 134	5.4e-31	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49730 AT1G49730 AT1G49730 AT1G49730 AT1G49730 AT3G19300
fragaria_vesca	FvH4_2g05840 FvH4_2g05840 FvH4_2g05840 FvH4_2g05840 FvH4_2g05840
malus_domestica	MD05G1082700.v1.1
prunus_persica	Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1
pyrus_communis	pycom05g07770
rosa_chinensis	RchiOBHm_Chr4g0408511 RchiOBHm_Chr6g0257781
rosa_laevigata	RLG00000014723 RLG00000014972
rosa_multiflora	Rmu_co8277925.1_g000001 Rmu_co8468953.1_g000001 Rmu_sc0003520.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352930 Rroxscaffold_7G00208940
rosa_rugosa	Rorug05G0568100 Rorug05G0568200 Rorug05G0568300 Rorug05G0568400
rosa_samantha	Rh2AG563700 Rh6AG085100 Rh6AG085200 Rh6BG079500 Rh6CG074500 Rh6DG071400
rosa_wichuraiana	Rw6G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1428
Acc65I	GGTACC	1 cut(s)	1643
AccB1I	GGYRCC	1 cut(s)	1643
AccB7I	CCANNNNNTGG	1 cut(s)	179
AccI	GTMKAC	3 cut(s)	160, 594, 830
AccII	CGCG	1 cut(s)	1428
AciI	CCGC	2 cut(s)	1428, 1515
AclWI	GGATC	2 cut(s)	442, 1257
AcsI	RAATTY	4 cut(s)	559, 968, 1294, 1716
AcuI	CTGAAG	1 cut(s)	1190
AcvI	CACGTG	1 cut(s)	1391
AfaI	GTAC	2 cut(s)	631, 1645
AfiI	CCNNNNNNNGG	2 cut(s)	179, 255
AhlI	ACTAGT	2 cut(s)	1136, 1556
AjnI	CCWGG	2 cut(s)	1539, 1710
AluBI	AGCT	5 cut(s)	40, 842, 1118, 1364, 1409
AluI	AGCT	5 cut(s)	40, 842, 1118, 1364, 1409
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	2 cut(s)	442, 1257
Ama87I	CYCGRG	2 cut(s)	521, 951
ApeKI	GCWGC	4 cut(s)	37, 326, 404, 1517
ApoI	RAATTY	4 cut(s)	559, 968, 1294, 1716
ArsI	GACNNNNNNTTYG	2 cut(s)	366, 398
AseI	ATTAAT	1 cut(s)	749
Asp700I	GAANNNNTTC	1 cut(s)	354
Asp718I	GGTACC	1 cut(s)	1643
AspS9I	GGNCC	1 cut(s)	1148
AsuHPI	GGTGA	3 cut(s)	890, 1351, 1385
AvaI	CYCGRG	2 cut(s)	521, 951
AvaII	GGWCC	1 cut(s)	1148
BaeI	ACNNNNGTAYC	4 cut(s)	1635, 1635, 1668, 1668
BanI	GGYRCC	1 cut(s)	1643
BbrPI	CACGTG	1 cut(s)	1391
BbvI	GCAGC	4 cut(s)	49, 338, 391, 1529
BccI	CCATC	1 cut(s)	1098
BceAI	ACGGC	1 cut(s)	1020
BciT130I	CCWGG	2 cut(s)	1541, 1712
BclI	TGATCA	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	260
BcuI	ACTAGT	2 cut(s)	1136, 1556
BfaI	CTAG	6 cut(s)	336, 681, 1137, 1502, 1557, 1773
BfmI	CTRYAG	1 cut(s)	615
BisI	GCNGC	5 cut(s)	38, 327, 405, 1515, 1518
BlsI	GCNGC	5 cut(s)	39, 328, 406, 1516, 1519
Bme1390I	CCNGG	2 cut(s)	1541, 1712
Bme18I	GGWCC	1 cut(s)	1148
BmeT110I	CYCGRG	2 cut(s)	521, 951
BmgT120I	GGNCC	1 cut(s)	1148
BmiI	GGNNCC	1 cut(s)	1645
BmrFI	CCNGG	2 cut(s)	1541, 1712
BmsI	GCATC	7 cut(s)	759, 903, 964, 1140, 1235, 1321, 1499
BpmI	CTGGAG	1 cut(s)	1694
Bpu10I	CCTNAGC	1 cut(s)	1119
BpuEI	CTTGAG	1 cut(s)	1605
Bsa29I	ATCGAT	1 cut(s)	1102
BsaAI	YACGTR	1 cut(s)	1391
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 255
Bse3DI	GCAATG	2 cut(s)	1050, 1756
BseBI	CCWGG	2 cut(s)	1541, 1712
BseCI	ATCGAT	1 cut(s)	1102
BseGI	GGATG	4 cut(s)	55, 121, 490, 1226
BseLI	CCNNNNNNNGG	2 cut(s)	179, 255
BseMI	GCAATG	2 cut(s)	1050, 1756
BseMII	CTCAG	2 cut(s)	900, 1251
BseRI	GAGGAG	1 cut(s)	836
BseXI	GCAGC	4 cut(s)	49, 338, 391, 1529
Bsh1236I	CGCG	1 cut(s)	1428
Bsh1285I	CGRYCG	1 cut(s)	1432
BshNI	GGYRCC	1 cut(s)	1643
BshVI	ATCGAT	1 cut(s)	1102
BsiEI	CGRYCG	1 cut(s)	1432
BsiHKCI	CYCGRG	2 cut(s)	521, 951
BslI	CCNNNNNNNGG	2 cut(s)	179, 255
BsmAI	GTCTC	1 cut(s)	260
BsoBI	CYCGRG	2 cut(s)	521, 951
Bsp143I	GATC	4 cut(s)	57, 434, 730, 1249
BspACI	CCGC	2 cut(s)	1428, 1515
BspCNI	CTCAG	2 cut(s)	901, 1250
BspDI	ATCGAT	1 cut(s)	1102
BspFNI	CGCG	1 cut(s)	1428
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	1645
BspMAI	CTGCAG	1 cut(s)	619
BspPI	GGATC	2 cut(s)	442, 1257
BspQI	GCTCTTC	1 cut(s)	1744
BspT107I	GGYRCC	1 cut(s)	1643
BsrDI	GCAATG	2 cut(s)	1050, 1756
BssMI	GATC	4 cut(s)	57, 434, 730, 1249
BssNAI	GTATAC	2 cut(s)	595, 831
Bst1107I	GTATAC	2 cut(s)	595, 831
Bst2UI	CCWGG	2 cut(s)	1541, 1712
Bst4CI	ACNGT	1 cut(s)	1414
Bst6I	CTCTTC	3 cut(s)	857, 1460, 1744
BstAPI	GCANNNNNTGC	2 cut(s)	332, 1232
BstBAI	YACGTR	1 cut(s)	1391
BstC8I	GCNNGC	1 cut(s)	1571
BstDEI	CTNAG	4 cut(s)	909, 1119, 1237, 1634
BstF5I	GGATG	4 cut(s)	55, 121, 490, 1226
BstFNI	CGCG	1 cut(s)	1428
BstKTI	GATC	4 cut(s)	60, 437, 733, 1252
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	4 cut(s)	57, 434, 730, 1249
BstMCI	CGRYCG	1 cut(s)	1432
BstMWI	GCNNNNNNNGC	4 cut(s)	332, 526, 1232, 1511
BstNI	CCWGG	2 cut(s)	1541, 1712
BstNSI	RCATGY	1 cut(s)	818
BstSCI	CCNGG	2 cut(s)	1539, 1710
BstSFI	CTRYAG	1 cut(s)	615
BstUI	CGCG	1 cut(s)	1428
BstV1I	GCAGC	4 cut(s)	49, 338, 391, 1529
BstX2I	RGATCY	1 cut(s)	1249
BstYI	RGATCY	1 cut(s)	1249
BstZ17I	GTATAC	2 cut(s)	595, 831
Bsu15I	ATCGAT	1 cut(s)	1102
BsuTUI	ATCGAT	1 cut(s)	1102
BtgZI	GCGATG	1 cut(s)	296
BtsCI	GGATG	4 cut(s)	55, 121, 490, 1226
Cac8I	GCNNGC	1 cut(s)	1571
CciI	TCATGA	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	1148
ClaI	ATCGAT	1 cut(s)	1102
Csp6I	GTAC	2 cut(s)	630, 1644
CviQI	GTAC	2 cut(s)	630, 1644
DdeI	CTNAG	4 cut(s)	909, 1119, 1237, 1634
DpnI	GATC	4 cut(s)	59, 436, 732, 1251
DpnII	GATC	4 cut(s)	57, 434, 730, 1249
DraI	TTTAAA	1 cut(s)	1447
DrdI	GACNNNNNNGTC	1 cut(s)	1428
DseDI	GACNNNNNNGTC	1 cut(s)	1428
Eam1104I	CTCTTC	3 cut(s)	857, 1460, 1744
EarI	CTCTTC	3 cut(s)	857, 1460, 1744
Eco47I	GGWCC	1 cut(s)	1148
Eco57I	CTGAAG	1 cut(s)	1190
Eco72I	CACGTG	1 cut(s)	1391
Eco88I	CYCGRG	2 cut(s)	521, 951
EcoRII	CCWGG	2 cut(s)	1539, 1710
EcoT22I	ATGCAT	1 cut(s)	1336
FalI	AAGNNNNNCTT	2 cut(s)	1440, 1472
FbaI	TGATCA	1 cut(s)	57
FblI	GTMKAC	3 cut(s)	160, 594, 830
Fnu4HI	GCNGC	5 cut(s)	38, 327, 405, 1515, 1518
FokI	GGATG	4 cut(s)	62, 128, 497, 1213
Fsp4HI	GCNGC	5 cut(s)	38, 327, 405, 1515, 1518
FspBI	CTAG	6 cut(s)	336, 681, 1137, 1502, 1557, 1773
GluI	GCNGC	5 cut(s)	38, 327, 405, 1515, 1518
GsuI	CTGGAG	1 cut(s)	1694
HindIII	AAGCTT	1 cut(s)	840
HinfI	GANTC	9 cut(s)	245, 418, 849, 1077, 1342, 1544, 1610, 1625, 1726
HphI	GGTGA	3 cut(s)	890, 1351, 1385
Hpy166II	GTNNAC	4 cut(s)	161, 595, 632, 831
Hpy188I	TCNGA	4 cut(s)	910, 1170, 1240, 1354
Hpy188III	TCNNGA	9 cut(s)	288, 452, 523, 763, 953, 1217, 1457, 1622, 1773
Hpy8I	GTNNAC	4 cut(s)	161, 595, 632, 831
HpyAV	CCTTC	5 cut(s)	532, 1364, 1454, 1546, 1748
HpyCH4III	ACNGT	1 cut(s)	1414
HpyCH4IV	ACGT	3 cut(s)	637, 798, 1390
HpyF10VI	GCNNNNNNNGC	4 cut(s)	332, 526, 1232, 1511
HpyF3I	CTNAG	4 cut(s)	909, 1119, 1237, 1634
HpySE526I	ACGT	3 cut(s)	637, 798, 1390
KpnI	GGTACC	1 cut(s)	1647
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	4 cut(s)	57, 434, 730, 1249
LguI	GCTCTTC	1 cut(s)	1744
LmnI	GCTCC	5 cut(s)	175, 278, 1128, 1361, 1713
Lsp1109I	GCAGC	4 cut(s)	49, 338, 391, 1529
LweI	GCATC	7 cut(s)	759, 903, 964, 1140, 1235, 1321, 1499
MaeI	CTAG	6 cut(s)	336, 681, 1137, 1502, 1557, 1773
MaeII	ACGT	3 cut(s)	637, 798, 1390
MaeIII	GTNAC	2 cut(s)	361, 1559
MalI	GATC	4 cut(s)	59, 436, 732, 1251
MboI	GATC	4 cut(s)	57, 434, 730, 1249
MfeI	CAATTG	2 cut(s)	330, 1564
MflI	RGATCY	1 cut(s)	1249
MlyI	GAGTC	5 cut(s)	254, 427, 843, 1538, 1634
MmeI	TCCRAC	3 cut(s)	1035, 1339, 1396
MnlI	CCTC	9 cut(s)	40, 475, 535, 814, 817, 1092, 1240, 1246, 1751
Mph1103I	ATGCAT	1 cut(s)	1336
MroXI	GAANNNNTTC	1 cut(s)	354
MseI	TTAA	8 cut(s)	252, 554, 749, 1014, 1097, 1290, 1398, 1446
MslI	CAYNNNNRTG	1 cut(s)	1703
MspR9I	CCNGG	2 cut(s)	1541, 1712
MunI	CAATTG	2 cut(s)	330, 1564
MvaI	CCWGG	2 cut(s)	1541, 1712
MvnI	CGCG	1 cut(s)	1428
MwoI	GCNNNNNNNGC	4 cut(s)	332, 526, 1232, 1511
NdeII	GATC	4 cut(s)	57, 434, 730, 1249
NlaIV	GGNNCC	1 cut(s)	1645
NmuCI	GTSAC	2 cut(s)	361, 1559
NsiI	ATGCAT	1 cut(s)	1336
NspI	RCATGY	1 cut(s)	818
PaeR7I	CTCGAG	2 cut(s)	521, 951
PagI	TCATGA	1 cut(s)	451
PciSI	GCTCTTC	1 cut(s)	1744
PcsI	WCGNNNNNNNCGW	1 cut(s)	1213
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	4 cut(s)	1077, 1342, 1610, 1726
PflMI	CCANNNNNTGG	1 cut(s)	179
PfoI	TCCNGGA	2 cut(s)	1539, 1710
PkrI	GCNGC	5 cut(s)	39, 328, 406, 1516, 1519
PleI	GAGTC	5 cut(s)	253, 426, 843, 1538, 1633
PmaCI	CACGTG	1 cut(s)	1391
PmlI	CACGTG	1 cut(s)	1391
PpsI	GAGTC	5 cut(s)	253, 426, 843, 1538, 1633
Ppu21I	YACGTR	1 cut(s)	1391
PshBI	ATTAAT	1 cut(s)	749
Psp6I	CCWGG	2 cut(s)	1539, 1710
PspCI	CACGTG	1 cut(s)	1391
PspGI	CCWGG	2 cut(s)	1539, 1710
PspN4I	GGNNCC	1 cut(s)	1645
PspPI	GGNCC	1 cut(s)	1148
PstI	CTGCAG	1 cut(s)	619
PsuI	RGATCY	1 cut(s)	1249
RsaI	GTAC	2 cut(s)	631, 1645
RsaNI	GTAC	2 cut(s)	630, 1644
RseI	CAYNNNNRTG	1 cut(s)	1703
SapI	GCTCTTC	1 cut(s)	1744
SaqAI	TTAA	8 cut(s)	252, 554, 749, 1014, 1097, 1290, 1398, 1446
SatI	GCNGC	5 cut(s)	38, 327, 405, 1515, 1518
Sau3AI	GATC	4 cut(s)	57, 434, 730, 1249
Sau96I	GGNCC	1 cut(s)	1148
SchI	GAGTC	5 cut(s)	254, 427, 843, 1538, 1634
ScrFI	CCNGG	2 cut(s)	1541, 1712
SfaNI	GCATC	7 cut(s)	759, 903, 964, 1140, 1235, 1321, 1499
SfcI	CTRYAG	1 cut(s)	615
Sfr274I	CTCGAG	2 cut(s)	521, 951
SinI	GGWCC	1 cut(s)	1148
SlaI	CTCGAG	2 cut(s)	521, 951
SmiMI	CAYNNNNRTG	1 cut(s)	1703
SmlI	CTYRAG	3 cut(s)	521, 951, 1620
SmoI	CTYRAG	3 cut(s)	521, 951, 1620
SpeI	ACTAGT	2 cut(s)	1136, 1556
SsiI	CCGC	2 cut(s)	1428, 1515
SspI	AATATT	2 cut(s)	67, 658
SspMI	CTAG	6 cut(s)	336, 681, 1137, 1502, 1557, 1773
StyD4I	CCNGG	2 cut(s)	1539, 1710
TaaI	ACNGT	1 cut(s)	1414
TaiI	ACGT	3 cut(s)	640, 801, 1393
TaqI	TCGA	5 cut(s)	522, 733, 952, 1102, 1178
TatI	WGTACW	1 cut(s)	629
TauI	GCSGC	1 cut(s)	1517
TfiI	GAWTC	4 cut(s)	1077, 1342, 1610, 1726
Tru1I	TTAA	8 cut(s)	252, 554, 749, 1014, 1097, 1290, 1398, 1446
Tru9I	TTAA	8 cut(s)	252, 554, 749, 1014, 1097, 1290, 1398, 1446
TseFI	GTSAC	2 cut(s)	361, 1559
TseI	GCWGC	4 cut(s)	37, 326, 404, 1517
Tsp45I	GTSAC	2 cut(s)	361, 1559
TspGWI	ACGGA	1 cut(s)	447
Van91I	CCANNNNNTGG	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	1148
VspI	ATTAAT	1 cut(s)	749
XapI	RAATTY	4 cut(s)	559, 968, 1294, 1716
XbaI	TCTAGA	1 cut(s)	1772
XceI	RCATGY	1 cut(s)	818
XhoI	CTCGAG	2 cut(s)	521, 951
XmiI	GTMKAC	3 cut(s)	160, 594, 830
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	6 cut(s)	336, 681, 1137, 1502, 1557, 1773
Zsp2I	ATGCAT	1 cut(s)	1336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.