Rorug05G0568100

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003002
Physical Location & Seq
Reverse (-)
76121337 .. 76123430
2094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0568100.1

Sequence Viewer

Length: 810 bp
ATGGCTTTGTTCATTTCCAGAAGAATCGTACGTTCATTTGGTTCTGGTTTAGCATCAGGCCATGTTTCCAAGGGTGGATCAGTGTTTTGTGCTTGTCGAATGCTTTCGACTTCAGTCTTGACCCATGAGTCGAGTGGAGGTGCATTTTGCTCTGATTCATTGTCCTTAAAGCCTCCCGGGGCTTCGGAGTGCACTACAGTGACAAAATTTCTTGATGAAAAGAAAGGCTCCACAACTTTGGCTAGTGATGTTTTTGATGCACCTATTACGATGGATATTGCTCGTCGGATATTTTTCTTCTTTCGTTGGCTTCATCCAGTTGTGCTGTGGCAGCTAGCAAAAAGGCAACAGCCATCGAATTGGAAGGAGAGTGGTCGAGCCAGCCATGGAACATTGAGTGATCCCCAGCTCAGAGGTCTTAAGCCACGAAGTCATACTATTAAGAATGTCGAACGTCTGGGATTAAAGATTGCTCTGACATCTCGAGCTGCACAGGGAAAGCTTCTGGTTTTTGAGGATTTTGGGATCTACAGAAATAAACCCAAGAACATTGTGAACTACGTCAAGCAAAGACGGAAAAAGGAGAAAAAGAAGAAAATTCTGCTGGTGGATGGTGGTCCAATAAGTGAAAAGCTCAAGTTGGCTACTAAAAATTTACATTACGTGACTGTGCTGCCTTCAAGTGAGTTGGACGTCGACAGCATCCTTTACTATGACACACTGGTGATGTCCCGTGATGCTGTAAATAAAATTGCTGAGCAAATTATGTATACTCCAATCAACCATGGATCCAGCACGACATACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

269

Amino Acids

30.04

Weight (kDa)

9.93

Isoelectric Point (pI)

48.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L4 PF00573 118 - 253 2.1e-20 Ribosomal protein L4/L1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 127
AatII GACGTC 1 cut(s) 696
AccI GTMKAC 2 cut(s) 696, 770
AclWI GGATC 5 cut(s) 85, 395, 533, 783, 796
AcsI RAATTY 3 cut(s) 206, 597, 652
AcuI CTGAAG 1 cut(s) 96
AcyI GRCGYC 1 cut(s) 693
AfaI GTAC 1 cut(s) 30
AflII CTTAAG 1 cut(s) 419
AgsI TTSAA 1 cut(s) 681
AleI CACNNNNGTG 2 cut(s) 197, 722
AluBI AGCT 5 cut(s) 334, 409, 488, 502, 634
AluI AGCT 5 cut(s) 334, 409, 488, 502, 634
Alw21I GWGCWC 1 cut(s) 194
Alw44I GTGCAC 1 cut(s) 190
AlwI GGATC 5 cut(s) 85, 395, 533, 783, 796
Ama87I CYCGRG 2 cut(s) 176, 483
AoxI GGCC 1 cut(s) 58
ApaLI GTGCAC 1 cut(s) 190
ApeKI GCWGC 3 cut(s) 331, 488, 673
ApoI RAATTY 3 cut(s) 206, 597, 652
Asp700I GAANNNNTTC 1 cut(s) 103
AspS9I GGNCC 1 cut(s) 617
AsuC2I CCSGG 2 cut(s) 177, 178
AsuHPI GGTGA 1 cut(s) 736
AsuNHI GCTAGC 1 cut(s) 334
AvaI CYCGRG 2 cut(s) 176, 483
AvaII GGWCC 1 cut(s) 617
BaeGI GKGCMC 1 cut(s) 194
BamHI GGATCC 1 cut(s) 788
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 3 cut(s) 343, 475, 660
BccI CCATC 3 cut(s) 265, 361, 605
BcnI CCSGG 2 cut(s) 177, 178
BfaI CTAG 2 cut(s) 243, 335
BfmI CTRYAG 2 cut(s) 195, 529
BfrI CTTAAG 1 cut(s) 419
BisI GCNGC 3 cut(s) 332, 489, 674
BlpI GCTNAGC 1 cut(s) 756
BlsI GCNGC 3 cut(s) 333, 490, 675
Bme1390I CCNGG 2 cut(s) 177, 178
Bme18I GGWCC 1 cut(s) 617
BmeT110I CYCGRG 2 cut(s) 176, 483
BmgT120I GGNCC 1 cut(s) 617
BmiI GGNNCC 2 cut(s) 229, 790
BmrFI CCNGG 2 cut(s) 177, 178
BmsI GCATC 4 cut(s) 62, 247, 711, 727
BmtI GCTAGC 1 cut(s) 338
BoxI GACNNNNGTC 1 cut(s) 113
Bpu1102I GCTNAGC 1 cut(s) 756
BpuEI CTTGAG 1 cut(s) 620
BpuMI CCSGG 2 cut(s) 177, 178
BsaAI YACGTR 1 cut(s) 664
BsaHI GRCGYC 1 cut(s) 693
BsaJI CCNNGG 5 cut(s) 69, 176, 177, 385, 784
Bse1I ACTGG 3 cut(s) 317, 726, 809
BseDI CCNNGG 5 cut(s) 69, 176, 177, 385, 784
BseGI GGATG 3 cut(s) 313, 616, 702
BseMII CTCAG 2 cut(s) 424, 747
BseNI ACTGG 3 cut(s) 317, 726, 809
BseSI GKGCMC 1 cut(s) 194
BseXI GCAGC 3 cut(s) 343, 475, 660
BseYI CCCAGC 1 cut(s) 405
BsgI GTGCAG 1 cut(s) 474
BshFI GGCC 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 194
BsiHKCI CYCGRG 2 cut(s) 176, 483
BsiSI CCGG 1 cut(s) 177
BsiWI CGTACG 1 cut(s) 28
BslFI GGGAC 1 cut(s) 715
BsmFI GGGAC 1 cut(s) 715
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 1 cut(s) 60
BsoBI CYCGRG 2 cut(s) 176, 483
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 4 cut(s) 77, 400, 525, 788
Bsp1720I GCTNAGC 1 cut(s) 756
Bsp19I CCATGG 2 cut(s) 385, 784
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 2 cut(s) 423, 748
BspLI GGNNCC 2 cut(s) 229, 790
BspOI GCTAGC 1 cut(s) 338
BspPI GGATC 5 cut(s) 85, 395, 533, 783, 796
BspTI CTTAAG 1 cut(s) 419
BsrI ACTGG 3 cut(s) 317, 726, 809
BssECI CCNNGG 5 cut(s) 69, 176, 177, 385, 784
BssMI GATC 4 cut(s) 77, 400, 525, 788
BssNAI GTATAC 1 cut(s) 771
BssNI GRCGYC 1 cut(s) 693
BssT1I CCWWGG 3 cut(s) 69, 385, 784
Bst1107I GTATAC 1 cut(s) 771
Bst4CI ACNGT 2 cut(s) 199, 670
BstACI GRCGYC 1 cut(s) 693
BstAFI CTTAAG 1 cut(s) 419
BstBAI YACGTR 1 cut(s) 664
BstC8I GCNNGC 2 cut(s) 336, 382
BstDEI CTNAG 2 cut(s) 410, 756
BstDSI CCRYGG 2 cut(s) 385, 784
BstF5I GGATG 3 cut(s) 313, 616, 702
BstKTI GATC 4 cut(s) 80, 403, 528, 791
BstMBI GATC 4 cut(s) 77, 400, 525, 788
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstPAI GACNNNNGTC 1 cut(s) 113
BstSCI CCNGG 2 cut(s) 175, 176
BstSFI CTRYAG 2 cut(s) 195, 529
BstSLI GKGCMC 1 cut(s) 194
BstV1I GCAGC 3 cut(s) 343, 475, 660
BstX2I RGATCY 2 cut(s) 525, 788
BstXI CCANNNNNNTGG 2 cut(s) 238, 360
BstYI RGATCY 2 cut(s) 525, 788
BstZ17I GTATAC 1 cut(s) 771
BsuRI GGCC 1 cut(s) 60
BtgI CCRYGG 2 cut(s) 385, 784
BtsCI GGATG 3 cut(s) 313, 616, 702
BtsIMutI CAGTG 3 cut(s) 87, 204, 719
Cac8I GCNNGC 2 cut(s) 336, 382
Cfr13I GGNCC 1 cut(s) 617
Cfr9I CCCGGG 1 cut(s) 176
Csp6I GTAC 1 cut(s) 29
CviAII CATG 4 cut(s) 62, 125, 386, 785
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 2 cut(s) 410, 756
DpnI GATC 4 cut(s) 79, 402, 527, 790
DpnII GATC 4 cut(s) 77, 400, 525, 788
DrdI GACNNNNNNGTC 1 cut(s) 127
DseDI GACNNNNNNGTC 1 cut(s) 127
Eco130I CCWWGG 3 cut(s) 69, 385, 784
Eco47I GGWCC 1 cut(s) 617
Eco57I CTGAAG 1 cut(s) 96
Eco88I CYCGRG 2 cut(s) 176, 483
EcoT14I CCWWGG 3 cut(s) 69, 385, 784
ErhI CCWWGG 3 cut(s) 69, 385, 784
FaeI CATG 4 cut(s) 65, 128, 389, 788
FaiI YATR 9 cut(s) 63, 126, 387, 435, 714, 767, 771, 786, 802
FaqI GGGAC 1 cut(s) 715
FatI CATG 4 cut(s) 61, 124, 385, 784
FblI GTMKAC 2 cut(s) 696, 770
Fnu4HI GCNGC 3 cut(s) 332, 489, 674
FokI GGATG 3 cut(s) 300, 623, 689
Fsp4HI GCNGC 3 cut(s) 332, 489, 674
FspBI CTAG 2 cut(s) 243, 335
GluI GCNGC 3 cut(s) 332, 489, 674
GsaI CCCAGC 1 cut(s) 409
HaeIII GGCC 1 cut(s) 60
HapII CCGG 1 cut(s) 177
Hin1I GRCGYC 1 cut(s) 693
Hin1II CATG 4 cut(s) 65, 128, 389, 788
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HindIII AAGCTT 1 cut(s) 500
HinfI GANTC 3 cut(s) 24, 128, 155
HpaII CCGG 1 cut(s) 177
HphI GGTGA 1 cut(s) 736
Hpy166II GTNNAC 4 cut(s) 192, 556, 697, 771
Hpy188I TCNGA 5 cut(s) 154, 187, 288, 413, 477
Hpy188III TCNNGA 4 cut(s) 18, 118, 212, 483
Hpy8I GTNNAC 4 cut(s) 192, 556, 697, 771
Hpy99I CGWCG 2 cut(s) 288, 698
HpyAV CCTTC 2 cut(s) 358, 687
HpyCH4III ACNGT 2 cut(s) 199, 670
HpyCH4IV ACGT 5 cut(s) 31, 454, 561, 663, 693
HpyCH4V TGCA 4 cut(s) 143, 192, 260, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpyF3I CTNAG 2 cut(s) 410, 756
HpySE526I ACGT 5 cut(s) 31, 454, 561, 663, 693
Hsp92I GRCGYC 1 cut(s) 693
Hsp92II CATG 4 cut(s) 65, 128, 389, 788
Kzo9I GATC 4 cut(s) 77, 400, 525, 788
LmnI GCTCC 1 cut(s) 233
Lsp1109I GCAGC 3 cut(s) 343, 475, 660
LweI GCATC 4 cut(s) 62, 247, 711, 727
MaeI CTAG 2 cut(s) 243, 335
MaeII ACGT 5 cut(s) 31, 454, 561, 663, 693
MaeIII GTNAC 2 cut(s) 199, 664
MalI GATC 4 cut(s) 79, 402, 527, 790
MboI GATC 4 cut(s) 77, 400, 525, 788
MboII GAAGA 3 cut(s) 33, 289, 604
MflI RGATCY 2 cut(s) 525, 788
MhlI GDGCHC 1 cut(s) 194
MluCI AATT 6 cut(s) 206, 358, 597, 652, 750, 762
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 2 cut(s) 266, 669
MnlI CCTC 4 cut(s) 131, 183, 407, 508
MroXI GAANNNNTTC 1 cut(s) 103
MseI TTAA 4 cut(s) 167, 420, 441, 464
MslI CAYNNNNRTG 3 cut(s) 197, 722, 805
MspCI CTTAAG 1 cut(s) 419
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 2 cut(s) 177, 178
Mva1269I GAATGC 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 331
NciI CCSGG 2 cut(s) 177, 178
NcoI CCATGG 2 cut(s) 385, 784
NdeII GATC 4 cut(s) 77, 400, 525, 788
NheI GCTAGC 1 cut(s) 334
NlaIII CATG 4 cut(s) 65, 128, 389, 788
NlaIV GGNNCC 2 cut(s) 229, 790
NmuCI GTSAC 2 cut(s) 199, 664
OliI CACNNNNGTG 2 cut(s) 197, 722
PaeR7I CTCGAG 1 cut(s) 483
PctI GAATGC 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 103
PfeI GAWTC 2 cut(s) 24, 155
Pfl23II CGTACG 1 cut(s) 28
PkrI GCNGC 3 cut(s) 333, 490, 675
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Ppu21I YACGTR 1 cut(s) 664
PshAI GACNNNNGTC 1 cut(s) 113
PspFI CCCAGC 1 cut(s) 405
PspLI CGTACG 1 cut(s) 28
PspN4I GGNNCC 2 cut(s) 229, 790
PspPI GGNCC 1 cut(s) 617
PsuI RGATCY 2 cut(s) 525, 788
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
RseI CAYNNNNRTG 3 cut(s) 197, 722, 805
SalI GTCGAC 1 cut(s) 695
SaqAI TTAA 4 cut(s) 167, 420, 441, 464
SatI GCNGC 3 cut(s) 332, 489, 674
Sau3AI GATC 4 cut(s) 77, 400, 525, 788
Sau96I GGNCC 1 cut(s) 617
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 2 cut(s) 177, 178
SduI GDGCHC 1 cut(s) 194
SfaNI GCATC 4 cut(s) 62, 247, 711, 727
SfcI CTRYAG 2 cut(s) 195, 529
Sfr274I CTCGAG 1 cut(s) 483
SinI GGWCC 1 cut(s) 617
SlaI CTCGAG 1 cut(s) 483
SmaI CCCGGG 1 cut(s) 178
SmiMI CAYNNNNRTG 3 cut(s) 197, 722, 805
SmlI CTYRAG 3 cut(s) 419, 483, 635
SmoI CTYRAG 3 cut(s) 419, 483, 635
Sse9I AATT 6 cut(s) 206, 358, 597, 652, 750, 762
SspMI CTAG 2 cut(s) 243, 335
StyD4I CCNGG 2 cut(s) 175, 176
StyI CCWWGG 3 cut(s) 69, 385, 784
TaaI ACNGT 2 cut(s) 199, 670
TaiI ACGT 5 cut(s) 34, 457, 564, 666, 696
TaqI TCGA 8 cut(s) 97, 107, 131, 356, 376, 450, 484, 696
TasI AATT 6 cut(s) 206, 358, 597, 652, 750, 762
TfiI GAWTC 2 cut(s) 24, 155
Tru1I TTAA 4 cut(s) 167, 420, 441, 464
Tru9I TTAA 4 cut(s) 167, 420, 441, 464
TscAI CASTG 3 cut(s) 87, 204, 726
TseFI GTSAC 2 cut(s) 199, 664
TseI GCWGC 3 cut(s) 331, 488, 673
Tsp45I GTSAC 2 cut(s) 199, 664
TspDTI ATGAA 4 cut(s) 24, 147, 231, 302
TspGWI ACGGA 1 cut(s) 589
TspMI CCCGGG 1 cut(s) 176
TspRI CASTG 3 cut(s) 87, 204, 726
Vha464I CTTAAG 1 cut(s) 419
VneI GTGCAC 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 617
XapI RAATTY 3 cut(s) 206, 597, 652
XcmI CCANNNNNNNNNTGG 2 cut(s) 131, 324
XhoI CTCGAG 1 cut(s) 483
XmaI CCCGGG 1 cut(s) 176
XmiI GTMKAC 2 cut(s) 696, 770
XmnI GAANNNNTTC 1 cut(s) 103
XspI CTAG 2 cut(s) 243, 335
ZraI GACGTC 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.