Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003002

Physical Location & Seq

Genomic Coordinates Forward (+)

12796343 .. 12799483

Gene Structure 3141 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG085100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGTGTTTTACAGACTGGGATTTCTTCTGGGTTTTCTTGCTTTTATTGGAGTGCAGCTAATCCCTCTAACAATGGCTGACTGTCCATTAAATTTAAGTGGATCAAATGCTACTCTAGTAGCCTCTTTGTGCTCGAATAGAGATGACAGAGGGAAATGTTGCCGCTACATAAATGCTTTCGTGGCAGTATCTATTGCTCAGTATGCAAATGCAACAAGCAACTTAGGGGTACCTTCAAATTTATCCAACGCATGCCTCGATTTCATATCACAAACCTTAGAATTGCATGGAATTCCCCAAAATGCAACAGCTTTCTGTGGTTTGGGGACAAAAATCCCAGTAAATTATGAGTGTAAGGGTCGAACAACTGTTACACAGATGGTGCAGTCTCCGAAATTCCCTGATGTCGTGGAAAATTGCAAAGTACCACTGTCAGGGGAAAGTAATTGCAAGAAGTGTATAAATGCTGGCATTGTATATCTTCATAACCTATTAGGAACTGAAAATAACATTACATTCAGTACCTGCCGTGATGCAACTTTTGCTGCAGTAGCAAGCCAAGTTGATAATGCTTCAGCTGTTGGCATTGCAAGCTGTTTCTTTCAAGTCCAGGGGCTTAACATCCTACCAGTTGCAGAGCCATCACCATCATCCACCCCAAAGGCATCTCCAAGTCCATTGGTGGCTGCTAGCCCAAATCAACACTTGTCAGGTGTAGATTTAAGTGAAACACATCATCCCTACCATCTGACCCTGGTTCCAGGTATCGGCATTGCAGTAACTGCTGTTGCTGTAATGATGCTTTTAGTCCTGATAGTTCTTATTCGTAAGAAAAGCAGAGAGCTAGTGGATTTTGAAGATATAGATAAGACATCAAAATCATTTCCCCCACCTCGTCCTTTAAGGAAATTTCATGAAGGTCCTCCATCTATGTTTCAAAAATTCAGCTACAAGGAGATAAAGAAGGCGACAGACAATTTCAATACTACCATTGGACAAGGGGGATTTGGAACTGTGTACAAAGCTCACTTTAGTGATGGTTTAGTAGCAGCAGTGAAGCGGATGAACAAAGTTTCCGAGCAGGGGGAGCATGAGTTCTGCAGAGAGATAGTGCTTCTTGCCAGGTTGCATCATCGGCATCTTGTTTCTCTTAGGGGCTTCTGCATTGAGAAACATGAGAGGTTTCTGATGTATGAGTACATGGCAAATGGTAGCCTGAAGGATCATCTTCATTGTATGTTTCTCCATCTCTTCAATCACTTGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

422

Amino Acids

46.24

Weight (kDa)

8.53

Isoelectric Point (pI)

34.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	25 - 170	8.8e-25	SPARK
PK_Tyr_Ser-Thr	PF07714	327 - 411	2.2e-15	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	328 - 411	5.2e-15	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49730 AT1G49730 AT1G49730 AT1G49730 AT1G49730 AT3G19300
fragaria_vesca	FvH4_2g05840 FvH4_2g05840 FvH4_2g05840 FvH4_2g05840 FvH4_2g05840
malus_domestica	MD05G1082700.v1.1
prunus_persica	Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1
pyrus_communis	pycom05g07770
rosa_chinensis	RchiOBHm_Chr4g0408511 RchiOBHm_Chr6g0257781
rosa_laevigata	RLG00000014723 RLG00000014972
rosa_multiflora	Rmu_co8277925.1_g000001 Rmu_co8468953.1_g000001 Rmu_sc0003520.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352930 Rroxscaffold_7G00208940
rosa_rugosa	Rorug05G0568100 Rorug05G0568200 Rorug05G0568300 Rorug05G0568400
rosa_samantha	Rh2AG563700 Rh6AG085100 Rh6AG085200 Rh6BG079500 Rh6CG074500 Rh6DG071400
rosa_wichuraiana	Rw6G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	533
Acc65I	GGTACC	1 cut(s)	229
AccB1I	GGYRCC	1 cut(s)	229
AciI	CCGC	2 cut(s)	163, 1060
AclWI	GGATC	2 cut(s)	109, 1230
AcsI	RAATTY	6 cut(s)	91, 238, 291, 395, 908, 941
AcuI	CTGAAG	2 cut(s)	558, 1238
AfaI	GTAC	5 cut(s)	231, 426, 523, 1019, 1199
AfiI	CCNNNNNNNGG	3 cut(s)	434, 767, 1083
AgsI	TTSAA	6 cut(s)	237, 605, 857, 938, 982, 1255
AjnI	CCWGG	4 cut(s)	609, 753, 760, 1121
AleI	CACNNNNGTG	1 cut(s)	1032
AloI	GAACNNNNNNTCC	4 cut(s)	1058, 1079, 1090, 1111
AluBI	AGCT	7 cut(s)	58, 311, 578, 594, 844, 948, 1025
AluI	AGCT	7 cut(s)	58, 311, 578, 594, 844, 948, 1025
Alw21I	GWGCWC	1 cut(s)	134
Alw26I	GTCTC	1 cut(s)	393
AlwI	GGATC	2 cut(s)	109, 1230
AlwNI	CAGNNNCTG	2 cut(s)	525, 782
ApeKI	GCWGC	4 cut(s)	55, 545, 686, 1049
ApoI	RAATTY	6 cut(s)	91, 238, 291, 395, 908, 941
Asp718I	GGTACC	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	920
AsuHPI	GGTGA	1 cut(s)	636
AsuNHI	GCTAGC	1 cut(s)	689
AvaII	GGWCC	1 cut(s)	920
BanI	GGYRCC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	4 cut(s)	67, 532, 673, 1061
BccI	CCATC	7 cut(s)	373, 649, 655, 753, 934, 1031, 1254
BceAI	ACGGC	1 cut(s)	513
BciT130I	CCWGG	4 cut(s)	611, 755, 762, 1123
BcoDI	GTCTC	1 cut(s)	393
BfaI	CTAG	3 cut(s)	116, 690, 845
BfmI	CTRYAG	2 cut(s)	546, 1099
BfuAI	ACCTGC	1 cut(s)	533
BisI	GCNGC	5 cut(s)	56, 163, 546, 687, 1050
BlsI	GCNGC	5 cut(s)	57, 164, 547, 688, 1051
Bme1390I	CCNGG	4 cut(s)	611, 755, 762, 1123
Bme18I	GGWCC	1 cut(s)	920
BmgT120I	GGNCC	1 cut(s)	920
BmiI	GGNNCC	2 cut(s)	231, 759
BmrFI	CCNGG	4 cut(s)	611, 755, 762, 1123
BmrI	ACTGGG	2 cut(s)	26, 332
BmsI	GCATC	5 cut(s)	523, 674, 789, 1138, 1147
BmtI	GCTAGC	1 cut(s)	693
BmuI	ACTGGG	2 cut(s)	26, 332
BsaJI	CCNNGG	2 cut(s)	610, 753
BsaXI	ACNNNNNCTCC	2 cut(s)	1079, 1109
Bsc4I	CCNNNNNNNGG	3 cut(s)	434, 767, 1083
Bse1I	ACTGG	3 cut(s)	21, 338, 629
Bse3DI	GCAATG	2 cut(s)	585, 771
BseBI	CCWGG	4 cut(s)	611, 755, 762, 1123
BseDI	CCNNGG	2 cut(s)	610, 753
BseGI	GGATG	4 cut(s)	621, 650, 736, 1068
BseLI	CCNNNNNNNGG	3 cut(s)	434, 767, 1083
BseMI	GCAATG	2 cut(s)	585, 771
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	3 cut(s)	21, 338, 629
BseXI	GCAGC	4 cut(s)	67, 532, 673, 1061
BsgI	GTGCAG	2 cut(s)	74, 404
BshNI	GGYRCC	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	3 cut(s)	434, 767, 1083
BsmAI	GTCTC	1 cut(s)	393
BsmFI	GGGAC	1 cut(s)	340
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp1407I	TGTACA	1 cut(s)	1017
Bsp143I	GATC	2 cut(s)	101, 1222
BspACI	CCGC	2 cut(s)	163, 1060
BspCNI	CTCAG	1 cut(s)	211
BspHI	TCATGA	1 cut(s)	913
BspLI	GGNNCC	2 cut(s)	231, 759
BspMAI	CTGCAG	2 cut(s)	550, 1103
BspMI	ACCTGC	1 cut(s)	533
BspOI	GCTAGC	1 cut(s)	693
BspPI	GGATC	2 cut(s)	109, 1230
BspT107I	GGYRCC	1 cut(s)	229
BsrDI	GCAATG	2 cut(s)	585, 771
BsrGI	TGTACA	1 cut(s)	1017
BsrI	ACTGG	3 cut(s)	21, 338, 629
BssECI	CCNNGG	2 cut(s)	610, 753
BssMI	GATC	2 cut(s)	101, 1222
Bst2UI	CCWGG	4 cut(s)	611, 755, 762, 1123
Bst4CI	ACNGT	4 cut(s)	83, 370, 432, 1015
Bst6I	CTCTTC	1 cut(s)	1256
BstAPI	GCANNNNNTGC	2 cut(s)	542, 782
BstAUI	TGTACA	1 cut(s)	1017
BstC8I	GCNNGC	5 cut(s)	253, 469, 556, 592, 691
BstDEI	CTNAG	4 cut(s)	198, 223, 277, 1151
BstF5I	GGATG	4 cut(s)	621, 650, 736, 1068
BstKTI	GATC	2 cut(s)	104, 1225
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	2 cut(s)	101, 1222
BstMWI	GCNNNNNNNGC	8 cut(s)	182, 203, 542, 551, 591, 782, 1087, 1135
BstNI	CCWGG	4 cut(s)	611, 755, 762, 1123
BstNSI	RCATGY	1 cut(s)	255
BstSCI	CCNGG	4 cut(s)	609, 753, 760, 1121
BstSFI	CTRYAG	2 cut(s)	546, 1099
BstV1I	GCAGC	4 cut(s)	67, 532, 673, 1061
BtsCI	GGATG	4 cut(s)	621, 650, 736, 1068
BtsI	GCAGTG	1 cut(s)	1059
BtsIMutI	CAGTG	2 cut(s)	428, 1059
BveI	ACCTGC	1 cut(s)	533
Cac8I	GCNNGC	5 cut(s)	253, 469, 556, 592, 691
CaiI	CAGNNNCTG	2 cut(s)	525, 782
CciI	TCATGA	1 cut(s)	913
Cfr13I	GGNCC	1 cut(s)	920
Csp6I	GTAC	5 cut(s)	230, 425, 522, 1018, 1198
CviAII	CATG	6 cut(s)	252, 287, 914, 1091, 1175, 1201
CviQI	GTAC	5 cut(s)	230, 425, 522, 1018, 1198
DdeI	CTNAG	4 cut(s)	198, 223, 277, 1151
DpnI	GATC	2 cut(s)	103, 1224
DpnII	GATC	2 cut(s)	101, 1222
Eam1104I	CTCTTC	1 cut(s)	1256
EarI	CTCTTC	1 cut(s)	1256
Eco47I	GGWCC	1 cut(s)	920
Eco57I	CTGAAG	2 cut(s)	558, 1238
EcoO109I	RGGNCCY	1 cut(s)	920
EcoRI	GAATTC	1 cut(s)	291
EcoRII	CCWGG	4 cut(s)	609, 753, 760, 1121
FaeI	CATG	6 cut(s)	255, 290, 917, 1094, 1178, 1204
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	6 cut(s)	251, 286, 913, 1090, 1174, 1200
Fnu4HI	GCNGC	5 cut(s)	56, 163, 546, 687, 1050
FokI	GGATG	4 cut(s)	608, 637, 723, 1075
Fsp4HI	GCNGC	5 cut(s)	56, 163, 546, 687, 1050
FspBI	CTAG	3 cut(s)	116, 690, 845
GluI	GCNGC	5 cut(s)	56, 163, 546, 687, 1050
Hin1II	CATG	6 cut(s)	255, 290, 917, 1094, 1178, 1204
HphI	GGTGA	1 cut(s)	636
Hpy166II	GTNNAC	1 cut(s)	1018
Hpy188I	TCNGA	4 cut(s)	393, 750, 1078, 1188
Hpy188III	TCNNGA	2 cut(s)	811, 914
Hpy8I	GTNNAC	1 cut(s)	1018
HpyAV	CCTTC	4 cut(s)	243, 911, 958, 1213
HpyCH4III	ACNGT	4 cut(s)	83, 370, 432, 1015
HpyF10VI	GCNNNNNNNGC	8 cut(s)	182, 203, 542, 551, 591, 782, 1087, 1135
HpyF3I	CTNAG	4 cut(s)	198, 223, 277, 1151
Hsp92II	CATG	6 cut(s)	255, 290, 917, 1094, 1178, 1204
KpnI	GGTACC	1 cut(s)	233
Kzo9I	GATC	2 cut(s)	101, 1222
LmnI	GCTCC	1 cut(s)	1087
Lsp1109I	GCAGC	4 cut(s)	67, 532, 673, 1061
LweI	GCATC	5 cut(s)	523, 674, 789, 1138, 1147
MaeI	CTAG	3 cut(s)	116, 690, 845
MaeIII	GTNAC	2 cut(s)	370, 778
MalI	GATC	2 cut(s)	103, 1224
MboI	GATC	2 cut(s)	101, 1222
MboII	GAAGA	5 cut(s)	17, 473, 869, 1220, 1243
MhlI	GDGCHC	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	7 cut(s)	75, 133, 143, 266, 903, 933, 1173
MseI	TTAA	5 cut(s)	89, 95, 618, 722, 902
MslI	CAYNNNNRTG	1 cut(s)	1032
MspA1I	CMGCKG	1 cut(s)	578
MspR9I	CCNGG	4 cut(s)	611, 755, 762, 1123
MvaI	CCWGG	4 cut(s)	611, 755, 762, 1123
MwoI	GCNNNNNNNGC	8 cut(s)	182, 203, 542, 551, 591, 782, 1087, 1135
NdeII	GATC	2 cut(s)	101, 1222
NheI	GCTAGC	1 cut(s)	689
NlaIII	CATG	6 cut(s)	255, 290, 917, 1094, 1178, 1204
NlaIV	GGNNCC	2 cut(s)	231, 759
NspI	RCATGY	1 cut(s)	255
OliI	CACNNNNGTG	1 cut(s)	1032
PaeI	GCATGC	1 cut(s)	255
PagI	TCATGA	1 cut(s)	913
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PkrI	GCNGC	5 cut(s)	57, 164, 547, 688, 1051
PpuMI	RGGWCCY	1 cut(s)	920
Psp5II	RGGWCCY	1 cut(s)	920
Psp6I	CCWGG	4 cut(s)	609, 753, 760, 1121
PspGI	CCWGG	4 cut(s)	609, 753, 760, 1121
PspN4I	GGNNCC	2 cut(s)	231, 759
PspPI	GGNCC	1 cut(s)	920
PspPPI	RGGWCCY	1 cut(s)	920
PsrI	GAACNNNNNNTAC	2 cut(s)	355, 387
PstI	CTGCAG	2 cut(s)	550, 1103
PstNI	CAGNNNCTG	2 cut(s)	525, 782
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	5 cut(s)	231, 426, 523, 1019, 1199
RsaNI	GTAC	5 cut(s)	230, 425, 522, 1018, 1198
RseI	CAYNNNNRTG	1 cut(s)	1032
SaqAI	TTAA	5 cut(s)	89, 95, 618, 722, 902
SatI	GCNGC	5 cut(s)	56, 163, 546, 687, 1050
Sau3AI	GATC	2 cut(s)	101, 1222
Sau96I	GGNCC	1 cut(s)	920
ScrFI	CCNGG	4 cut(s)	611, 755, 762, 1123
SduI	GDGCHC	1 cut(s)	134
SfaNI	GCATC	5 cut(s)	523, 674, 789, 1138, 1147
SfcI	CTRYAG	2 cut(s)	546, 1099
SinI	GGWCC	1 cut(s)	920
SmiMI	CAYNNNNRTG	1 cut(s)	1032
SphI	GCATGC	1 cut(s)	255
SsiI	CCGC	2 cut(s)	163, 1060
SspMI	CTAG	3 cut(s)	116, 690, 845
StyD4I	CCNGG	4 cut(s)	609, 753, 760, 1121
TaaI	ACNGT	4 cut(s)	83, 370, 432, 1015
TaqI	TCGA	3 cut(s)	134, 258, 361
TatI	WGTACW	2 cut(s)	1017, 1197
TauI	GCSGC	1 cut(s)	165
Tru1I	TTAA	5 cut(s)	89, 95, 618, 722, 902
Tru9I	TTAA	5 cut(s)	89, 95, 618, 722, 902
TscAI	CASTG	2 cut(s)	435, 1059
TseI	GCWGC	4 cut(s)	55, 545, 686, 1049
TspDTI	ATGAA	6 cut(s)	253, 473, 902, 930, 1079, 1220
TspRI	CASTG	2 cut(s)	435, 1059
VpaK11BI	GGWCC	1 cut(s)	920
XapI	RAATTY	6 cut(s)	91, 238, 291, 395, 908, 941
XceI	RCATGY	1 cut(s)	255
XspI	CTAG	3 cut(s)	116, 690, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.