Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003520.1

Orthogroup ID

OG0003002

Physical Location & Seq

Genomic Coordinates Forward (+)

1690 .. 3678

Gene Structure 1989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003520.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atggtgttttacagactgggatttcttctgggtcttcttgcttttattggagtgcagctaatccctctaacaatggctgactgtccattaaatttaagtggatcaaatgctactctagtagcctctttgtgctcgaatagagatgacagagggaaatgttgccgctacataaatgctttcgttgcagtatctattgctcagtatgcaaatgcaacaagcaacttaggggtaccttcaaatttatccaacgcatgcctcgatttcatatcacaaaccttagaattgcatggaattccccaaaatgcaacagctttctgtggtttggggacaaaaatcccagtaaattatgagtgtaagggacgaacaactgttacacagatggtgcagtctccgaaattccctgatgtcgtggaaaattgcaaagtaccactgtcaggggaaagtaattgcaagaagtgtataaatgctggcattgtatatcttcataacctattaggaactgaaaataacattacattcagtacctgccgtgatgcaacttttactgcagtagcaagccaagttgataatgcttcagctgttggcattgcaagctgtttctttcaagtccaggggcttaacatcctaccaggtactcacaattttggcagaaaagatttatattgcatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

223

Amino Acids

23.91

Weight (kDa)

7.93

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49730 AT1G49730 AT1G49730 AT1G49730 AT1G49730 AT3G19300
fragaria_vesca	FvH4_2g05840 FvH4_2g05840 FvH4_2g05840 FvH4_2g05840 FvH4_2g05840
malus_domestica	MD05G1082700.v1.1
prunus_persica	Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1
pyrus_communis	pycom05g07770
rosa_chinensis	RchiOBHm_Chr4g0408511 RchiOBHm_Chr6g0257781
rosa_laevigata	RLG00000014723 RLG00000014972
rosa_multiflora	Rmu_co8277925.1_g000001 Rmu_co8468953.1_g000001 Rmu_sc0003520.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352930 Rroxscaffold_7G00208940
rosa_rugosa	Rorug05G0568100 Rorug05G0568200 Rorug05G0568300 Rorug05G0568400
rosa_samantha	Rh2AG563700 Rh6AG085100 Rh6AG085200 Rh6BG079500 Rh6CG074500 Rh6DG071400
rosa_wichuraiana	Rw6G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	533
Acc65I	GGTACC	1 cut(s)	229
AccB1I	GGYRCC	1 cut(s)	229
AciI	CCGC	1 cut(s)	163
AclWI	GGATC	1 cut(s)	109
AcsI	RAATTY	4 cut(s)	91, 238, 291, 395
AcuI	CTGAAG	1 cut(s)	558
AfaI	GTAC	4 cut(s)	231, 426, 523, 634
AfiI	CCNNNNNNNGG	1 cut(s)	434
AgsI	TTSAA	2 cut(s)	237, 605
AjnI	CCWGG	2 cut(s)	609, 628
AluBI	AGCT	4 cut(s)	58, 311, 578, 594
AluI	AGCT	4 cut(s)	58, 311, 578, 594
Alw21I	GWGCWC	1 cut(s)	134
Alw26I	GTCTC	1 cut(s)	393
AlwI	GGATC	1 cut(s)	109
AlwNI	CAGNNNCTG	1 cut(s)	525
ApeKI	GCWGC	1 cut(s)	55
ApoI	RAATTY	4 cut(s)	91, 238, 291, 395
Asp718I	GGTACC	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	373
BceAI	ACGGC	1 cut(s)	513
BciT130I	CCWGG	2 cut(s)	611, 630
BcoDI	GTCTC	1 cut(s)	393
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	546
BfuAI	ACCTGC	1 cut(s)	533
BisI	GCNGC	2 cut(s)	56, 163
BlsI	GCNGC	2 cut(s)	57, 164
Bme1390I	CCNGG	2 cut(s)	611, 630
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	2 cut(s)	611, 630
BmrI	ACTGGG	2 cut(s)	26, 332
BmsI	GCATC	1 cut(s)	523
BmuI	ACTGGG	2 cut(s)	26, 332
BpiI	GAAGAC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	610
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
Bse1I	ACTGG	2 cut(s)	21, 338
Bse3DI	GCAATG	1 cut(s)	585
BseBI	CCWGG	2 cut(s)	611, 630
BseDI	CCNNGG	1 cut(s)	610
BseGI	GGATG	1 cut(s)	621
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	2 cut(s)	21, 338
BseXI	GCAGC	1 cut(s)	67
BsgI	GTGCAG	2 cut(s)	74, 404
BshNI	GGYRCC	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	134
BslFI	GGGAC	2 cut(s)	340, 372
BslI	CCNNNNNNNGG	1 cut(s)	434
BsmAI	GTCTC	1 cut(s)	393
BsmFI	GGGAC	2 cut(s)	340, 372
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	1 cut(s)	101
BspACI	CCGC	1 cut(s)	163
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	231
BspMAI	CTGCAG	1 cut(s)	550
BspMI	ACCTGC	1 cut(s)	533
BspPI	GGATC	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	585
BsrI	ACTGG	2 cut(s)	21, 338
BssECI	CCNNGG	1 cut(s)	610
BssMI	GATC	1 cut(s)	101
Bst2UI	CCWGG	2 cut(s)	611, 630
Bst4CI	ACNGT	3 cut(s)	83, 370, 432
BstC8I	GCNNGC	4 cut(s)	253, 469, 556, 592
BstDEI	CTNAG	3 cut(s)	198, 223, 277
BstF5I	GGATG	1 cut(s)	621
BstKTI	GATC	1 cut(s)	104
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	1 cut(s)	101
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 203, 591
BstNI	CCWGG	2 cut(s)	611, 630
BstNSI	RCATGY	2 cut(s)	255, 670
BstSCI	CCNGG	2 cut(s)	609, 628
BstSFI	CTRYAG	1 cut(s)	546
BstV1I	GCAGC	1 cut(s)	67
BstV2I	GAAGAC	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	621
BtsIMutI	CAGTG	1 cut(s)	428
BveI	ACCTGC	1 cut(s)	533
Cac8I	GCNNGC	4 cut(s)	253, 469, 556, 592
CaiI	CAGNNNCTG	1 cut(s)	525
CsiI	ACCWGGT	1 cut(s)	628
Csp6I	GTAC	4 cut(s)	230, 425, 522, 633
CviAII	CATG	3 cut(s)	252, 287, 667
CviJI	RGCY	8 cut(s)	58, 77, 122, 311, 558, 578, 594, 616
CviKI_1	RGCY	8 cut(s)	58, 77, 122, 311, 558, 578, 594, 616
CviQI	GTAC	4 cut(s)	230, 425, 522, 633
DdeI	CTNAG	3 cut(s)	198, 223, 277
DpnI	GATC	1 cut(s)	103
DpnII	GATC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	558
EcoRI	GAATTC	1 cut(s)	291
EcoRII	CCWGG	2 cut(s)	609, 628
FaeI	CATG	3 cut(s)	255, 290, 670
FaqI	GGGAC	2 cut(s)	340, 372
FatI	CATG	3 cut(s)	251, 286, 666
Fnu4HI	GCNGC	2 cut(s)	56, 163
FokI	GGATG	1 cut(s)	608
Fsp4HI	GCNGC	2 cut(s)	56, 163
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	2 cut(s)	56, 163
Hin1II	CATG	3 cut(s)	255, 290, 670
Hpy188I	TCNGA	1 cut(s)	393
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	3 cut(s)	83, 370, 432
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 203, 591
HpyF3I	CTNAG	3 cut(s)	198, 223, 277
Hsp92II	CATG	3 cut(s)	255, 290, 670
KpnI	GGTACC	1 cut(s)	233
Kzo9I	GATC	1 cut(s)	101
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	1 cut(s)	523
MabI	ACCWGGT	1 cut(s)	628
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	1 cut(s)	103
MboI	GATC	1 cut(s)	101
MboII	GAAGA	3 cut(s)	17, 26, 473
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	9 cut(s)	91, 238, 281, 291, 343, 395, 415, 445, 640
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	4 cut(s)	75, 133, 143, 266
MseI	TTAA	3 cut(s)	89, 95, 618
MspA1I	CMGCKG	1 cut(s)	578
MspR9I	CCNGG	2 cut(s)	611, 630
MvaI	CCWGG	2 cut(s)	611, 630
MwoI	GCNNNNNNNGC	3 cut(s)	182, 203, 591
NdeII	GATC	1 cut(s)	101
NlaIII	CATG	3 cut(s)	255, 290, 670
NlaIV	GGNNCC	1 cut(s)	231
NspI	RCATGY	2 cut(s)	255, 670
PaeI	GCATGC	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PkrI	GCNGC	2 cut(s)	57, 164
Psp6I	CCWGG	2 cut(s)	609, 628
PspGI	CCWGG	2 cut(s)	609, 628
PspN4I	GGNNCC	1 cut(s)	231
PsrI	GAACNNNNNNTAC	2 cut(s)	355, 387
PstI	CTGCAG	1 cut(s)	550
PstNI	CAGNNNCTG	1 cut(s)	525
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	4 cut(s)	231, 426, 523, 634
RsaNI	GTAC	4 cut(s)	230, 425, 522, 633
SaqAI	TTAA	3 cut(s)	89, 95, 618
SatI	GCNGC	2 cut(s)	56, 163
Sau3AI	GATC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	611, 630
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	9 cut(s)	60, 235, 278, 313, 492, 527, 580, 596, 634
SexAI	ACCWGGT	1 cut(s)	628
SfaNI	GCATC	1 cut(s)	523
SfcI	CTRYAG	1 cut(s)	546
SphI	GCATGC	1 cut(s)	255
Sse9I	AATT	9 cut(s)	91, 238, 281, 291, 343, 395, 415, 445, 640
SsiI	CCGC	1 cut(s)	163
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	2 cut(s)	609, 628
TaaI	ACNGT	3 cut(s)	83, 370, 432
TaqI	TCGA	2 cut(s)	134, 258
TasI	AATT	9 cut(s)	91, 238, 281, 291, 343, 395, 415, 445, 640
TauI	GCSGC	1 cut(s)	165
Tru1I	TTAA	3 cut(s)	89, 95, 618
Tru9I	TTAA	3 cut(s)	89, 95, 618
TscAI	CASTG	1 cut(s)	435
TseI	GCWGC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	253, 473
TspRI	CASTG	1 cut(s)	435
XapI	RAATTY	4 cut(s)	91, 238, 291, 395
XceI	RCATGY	2 cut(s)	255, 670
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.