Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003002

Physical Location & Seq

Genomic Coordinates Forward (+)

12645180 .. 12649732

Gene Structure 4553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G007650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGACAATACCTTTTACGCGTGCAGACTGTCCATTAAATTTCAGTGGATCAAATGCTACTCTAGTAGCCTCTTTGTGCTCGAATAGAGATGACAGAGGGAAATGTTGCCGCTACATAAATGCTTTCATTGCAGTATCTATTGCTCAGTATGCAAATGCAACAAGCAACTTAGGGGTACCTTCAAATTTATCCAACGCATGCCTCGATTTCATATCACAAACCTTAGAATTGCATGGAATTCCCCAAAATGCAACAGCTTTCTGTGTTTTGGGGACAAAAATCCCAGTAAATTATGAGTGTAAGGGTCGAACAACTGTTACACAGATGGTGCAGTCTCCGAAATTCCCTGATGTCATGGAAAATTGCAAAGTACCACTGTCAGGGGAAAGTAATTGCAAGAAGTGTATAAATGCTGGCATTGTATATCTTCATAACCTATTAGGAACTGAAAATAACATTACATTCAGTACCTGCCGTGATGCAACTTTTACTGCAATAGCAAGCCAAGTTGATAATGCTTCAGCTGTTGGCATTGCAAGCTGTTTCTTTCAAGTCCAGGGGCTTAACATCCTACCAGTTTCAGAGCCATCACCATCATCCACCCCAAAGGCATCTCCAAGTCCATTGGTGGCTGCTAGCCCAAACCAACACTTGTCAGGTGTAGCCTTAAGTGAAAAACATCATCCCTACCATCTGACCCTGGTTCCAGGTATCGGCATTGCAGTAACTGCTGTTGCCGTAATGATGCTTTTAGTCCTGATAGTTCTTATTCGTAAGAAAAGCACAGAGCTAGTGGATTTTGAAGATATAGATAAGGCATCAAAATCATTTCCCCCACCTCGTCCTTTAAGGAAATTTCATGAAGGTCCTCCATCTATGTTTCAAAAATTCAGCTACAAGGAGATAAAGAAGGCGACAGACAATTTCAATACTACCATTGGACAAGGGGGATTTGGAACTGTGTACAAAGCTCACTTTAGTGATGGTTTAGTAGCAGCAGTGAAGCGGATGAACAAAGTTTCCGAGCAGGGGGAGCATGAGTTCTGCAGAGAGATAGTGCTTCTTGCCAGGTTGCATCATCGGCATCTTGTTTCTCTTAGGGGCTTCTGCATTGAGAAACATGAGAGGTTTCTGATGTATGAGTACATGGCAAATGGTAGCCTGAAGGATCATCTTCATTCTCCCAATAGAACTCCTCTAAGTTGGCAGACTAGAGTTCAAATTGCCATTGATGTGGCTAATGCTCTGGAGTATCTCCATTTCTATTGTGATCCTCCTCTTTGCCATAGAGATATCAAGTCCAGCAATATCTTACTGGATGAAAATTTTGTGGCCAAGGTTGCAGACTTTGGCCTTGTACATGCATCAAAAGATGGTTCAGTTTTCTTTGAACCGGTAAATACTGATATCCGGGGAACTCCAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

475

Amino Acids

52.07

Weight (kDa)

8.26

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	8 - 152	6e-25	SPARK
PK_Tyr_Ser-Thr	PF07714	309 - 456	9e-33	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	310 - 461	3.2e-32	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49730 AT1G49730 AT1G49730 AT1G49730 AT1G49730 AT3G19300
fragaria_vesca	FvH4_2g05840 FvH4_2g05840 FvH4_2g05840 FvH4_2g05840 FvH4_2g05840
malus_domestica	MD05G1082700.v1.1
prunus_persica	Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1
pyrus_communis	pycom05g07770
rosa_chinensis	RchiOBHm_Chr4g0408511 RchiOBHm_Chr6g0257781
rosa_laevigata	RLG00000014723 RLG00000014972
rosa_multiflora	Rmu_co8277925.1_g000001 Rmu_co8468953.1_g000001 Rmu_sc0003520.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352930 Rroxscaffold_7G00208940
rosa_rugosa	Rorug05G0568100 Rorug05G0568200 Rorug05G0568300 Rorug05G0568400
rosa_samantha	Rh2AG563700 Rh6AG085100 Rh6AG085200 Rh6BG079500 Rh6CG074500 Rh6DG071400
rosa_wichuraiana	Rw6G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	479
Acc65I	GGTACC	1 cut(s)	175
AccB1I	GGYRCC	1 cut(s)	175
AccII	CGCG	1 cut(s)	19
AciI	CCGC	2 cut(s)	109, 1006
AclWI	GGATC	3 cut(s)	55, 1176, 1265
AcoI	YGGCCR	1 cut(s)	1332
AcsI	RAATTY	7 cut(s)	37, 184, 237, 341, 854, 887, 1324
AcuI	CTGAAG	2 cut(s)	504, 1184
AfaI	GTAC	6 cut(s)	177, 372, 469, 965, 1145, 1359
AfiI	CCNNNNNNNGG	3 cut(s)	380, 713, 1029
AflII	CTTAAG	1 cut(s)	667
AflIII	ACRYGT	1 cut(s)	17
AgeI	ACCGGT	1 cut(s)	1393
AgsI	TTSAA	7 cut(s)	183, 551, 803, 884, 928, 1220, 1391
AjnI	CCWGG	5 cut(s)	555, 699, 706, 1067, 1420
AleI	CACNNNNGTG	1 cut(s)	978
AloI	GAACNNNNNNTCC	4 cut(s)	1004, 1025, 1036, 1057
AluBI	AGCT	6 cut(s)	257, 524, 540, 790, 894, 971
AluI	AGCT	6 cut(s)	257, 524, 540, 790, 894, 971
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	3 cut(s)	55, 1176, 1265
AlwNI	CAGNNNCTG	2 cut(s)	471, 728
AoxI	GGCC	2 cut(s)	1332, 1351
ApeKI	GCWGC	2 cut(s)	632, 995
ApoI	RAATTY	7 cut(s)	37, 184, 237, 341, 854, 887, 1324
AsiGI	ACCGGT	1 cut(s)	1393
Asp718I	GGTACC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	866
AsuC2I	CCSGG	1 cut(s)	1412
AsuHPI	GGTGA	1 cut(s)	582
AsuNHI	GCTAGC	1 cut(s)	635
AvaII	GGWCC	1 cut(s)	866
BalI	TGGCCA	1 cut(s)	1334
BanI	GGYRCC	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	619, 1007
BccI	CCATC	7 cut(s)	319, 595, 601, 699, 880, 977, 1367
BceAI	ACGGC	2 cut(s)	459, 722
BciT130I	CCWGG	5 cut(s)	557, 701, 708, 1069, 1422
BcnI	CCSGG	1 cut(s)	1412
BcoDI	GTCTC	1 cut(s)	339
BfaI	CTAG	4 cut(s)	62, 636, 791, 1212
BfmI	CTRYAG	1 cut(s)	1045
BfrI	CTTAAG	1 cut(s)	667
BfuAI	ACCTGC	1 cut(s)	479
BisI	GCNGC	3 cut(s)	109, 633, 996
BlsI	GCNGC	3 cut(s)	110, 634, 997
Bme1390I	CCNGG	6 cut(s)	557, 701, 708, 1069, 1412, 1422
Bme18I	GGWCC	1 cut(s)	866
BmgT120I	GGNCC	1 cut(s)	866
BmiI	GGNNCC	2 cut(s)	177, 705
BmrFI	CCNGG	6 cut(s)	557, 701, 708, 1069, 1412, 1422
BmrI	ACTGGG	1 cut(s)	278
BmsI	GCATC	7 cut(s)	469, 620, 735, 827, 1084, 1093, 1373
BmtI	GCTAGC	1 cut(s)	639
BmuI	ACTGGG	1 cut(s)	278
BpmI	CTGGAG	2 cut(s)	1268, 1404
BpuMI	CCSGG	1 cut(s)	1412
BsaJI	CCNNGG	4 cut(s)	556, 699, 1335, 1411
BsaWI	WCCGGW	1 cut(s)	1393
BsaXI	ACNNNNNCTCC	2 cut(s)	1025, 1055
Bsc4I	CCNNNNNNNGG	3 cut(s)	380, 713, 1029
Bse118I	RCCGGY	1 cut(s)	1393
Bse1I	ACTGG	3 cut(s)	284, 575, 1320
Bse3DI	GCAATG	3 cut(s)	126, 531, 717
BseBI	CCWGG	5 cut(s)	557, 701, 708, 1069, 1422
BseDI	CCNNGG	4 cut(s)	556, 699, 1335, 1411
BseGI	GGATG	5 cut(s)	567, 596, 682, 1014, 1324
BseLI	CCNNNNNNNGG	3 cut(s)	380, 713, 1029
BseMI	GCAATG	3 cut(s)	126, 531, 717
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	3 cut(s)	284, 575, 1320
BseRI	GAGGAG	2 cut(s)	1185, 1266
BseXI	GCAGC	2 cut(s)	619, 1007
BsgI	GTGCAG	2 cut(s)	42, 350
Bsh1236I	CGCG	1 cut(s)	19
BshFI	GGCC	2 cut(s)	1334, 1353
BshNI	GGYRCC	1 cut(s)	175
BshTI	ACCGGT	1 cut(s)	1393
BsiHKAI	GWGCWC	1 cut(s)	80
BsiSI	CCGG	2 cut(s)	1394, 1411
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	3 cut(s)	380, 713, 1029
BsmAI	GTCTC	1 cut(s)	339
BsmFI	GGGAC	1 cut(s)	286
BsnI	GGCC	2 cut(s)	1334, 1353
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp1407I	TGTACA	2 cut(s)	963, 1357
Bsp143I	GATC	3 cut(s)	47, 1168, 1270
BspACI	CCGC	2 cut(s)	109, 1006
BspANI	GGCC	2 cut(s)	1334, 1353
BspCNI	CTCAG	1 cut(s)	157
BspFNI	CGCG	1 cut(s)	19
BspHI	TCATGA	1 cut(s)	859
BspLI	GGNNCC	2 cut(s)	177, 705
BspMAI	CTGCAG	1 cut(s)	1049
BspMI	ACCTGC	1 cut(s)	479
BspOI	GCTAGC	1 cut(s)	639
BspPI	GGATC	3 cut(s)	55, 1176, 1265
BspT107I	GGYRCC	1 cut(s)	175
BspTI	CTTAAG	1 cut(s)	667
BsrDI	GCAATG	3 cut(s)	126, 531, 717
BsrFI	RCCGGY	1 cut(s)	1393
BsrGI	TGTACA	2 cut(s)	963, 1357
BsrI	ACTGG	3 cut(s)	284, 575, 1320
BssAI	RCCGGY	1 cut(s)	1393
BssECI	CCNNGG	4 cut(s)	556, 699, 1335, 1411
BssMI	GATC	3 cut(s)	47, 1168, 1270
BssT1I	CCWWGG	1 cut(s)	1335
Bst2UI	CCWGG	5 cut(s)	557, 701, 708, 1069, 1422
Bst4CI	ACNGT	4 cut(s)	29, 316, 378, 961
BstAFI	CTTAAG	1 cut(s)	667
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstAUI	TGTACA	2 cut(s)	963, 1357
BstC8I	GCNNGC	6 cut(s)	21, 199, 415, 502, 538, 637
BstDEI	CTNAG	5 cut(s)	144, 169, 223, 1097, 1199
BstF5I	GGATG	5 cut(s)	567, 596, 682, 1014, 1324
BstFNI	CGCG	1 cut(s)	19
BstKTI	GATC	3 cut(s)	50, 1171, 1273
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	3 cut(s)	47, 1168, 1270
BstMWI	GCNNNNNNNGC	7 cut(s)	128, 149, 537, 728, 1033, 1081, 1340
BstNI	CCWGG	5 cut(s)	557, 701, 708, 1069, 1422
BstNSI	RCATGY	2 cut(s)	201, 1364
BstSCI	CCNGG	6 cut(s)	555, 699, 706, 1067, 1410, 1420
BstSFI	CTRYAG	1 cut(s)	1045
BstUI	CGCG	1 cut(s)	19
BstV1I	GCAGC	2 cut(s)	619, 1007
BstXI	CCANNNNNNTGG	1 cut(s)	1234
BsuRI	GGCC	2 cut(s)	1334, 1353
BtsCI	GGATG	5 cut(s)	567, 596, 682, 1014, 1324
BtsI	GCAGTG	1 cut(s)	1005
BtsIMutI	CAGTG	3 cut(s)	49, 374, 1005
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	6 cut(s)	21, 199, 415, 502, 538, 637
CaiI	CAGNNNCTG	2 cut(s)	471, 728
CciI	TCATGA	1 cut(s)	859
Cfr10I	RCCGGY	1 cut(s)	1393
Cfr13I	GGNCC	1 cut(s)	866
Csp6I	GTAC	6 cut(s)	176, 371, 468, 964, 1144, 1358
CspAI	ACCGGT	1 cut(s)	1393
CviAII	CATG	8 cut(s)	198, 233, 355, 860, 1037, 1121, 1147, 1361
CviQI	GTAC	6 cut(s)	176, 371, 468, 964, 1144, 1358
DdeI	CTNAG	5 cut(s)	144, 169, 223, 1097, 1199
DpnI	GATC	3 cut(s)	49, 1170, 1272
DpnII	GATC	3 cut(s)	47, 1168, 1270
EaeI	YGGCCR	1 cut(s)	1332
Eco130I	CCWWGG	1 cut(s)	1335
Eco32I	GATATC	2 cut(s)	1294, 1408
Eco47I	GGWCC	1 cut(s)	866
Eco57I	CTGAAG	2 cut(s)	504, 1184
EcoO109I	RGGNCCY	1 cut(s)	866
EcoRI	GAATTC	1 cut(s)	237
EcoRII	CCWGG	5 cut(s)	555, 699, 706, 1067, 1420
EcoRV	GATATC	2 cut(s)	1294, 1408
EcoT14I	CCWWGG	1 cut(s)	1335
EcoT22I	ATGCAT	1 cut(s)	1366
ErhI	CCWWGG	1 cut(s)	1335
FaeI	CATG	8 cut(s)	201, 236, 358, 863, 1040, 1124, 1150, 1364
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	8 cut(s)	197, 232, 354, 859, 1036, 1120, 1146, 1360
Fnu4HI	GCNGC	3 cut(s)	109, 633, 996
FokI	GGATG	5 cut(s)	554, 583, 669, 1021, 1331
Fsp4HI	GCNGC	3 cut(s)	109, 633, 996
FspBI	CTAG	4 cut(s)	62, 636, 791, 1212
GluI	GCNGC	3 cut(s)	109, 633, 996
GsuI	CTGGAG	2 cut(s)	1268, 1404
HaeIII	GGCC	2 cut(s)	1334, 1353
HapII	CCGG	2 cut(s)	1394, 1411
Hin1II	CATG	8 cut(s)	201, 236, 358, 863, 1040, 1124, 1150, 1364
HpaII	CCGG	2 cut(s)	1394, 1411
HphI	GGTGA	1 cut(s)	582
Hpy166II	GTNNAC	1 cut(s)	964
Hpy188I	TCNGA	5 cut(s)	339, 583, 696, 1024, 1134
Hpy188III	TCNNGA	3 cut(s)	757, 860, 1247
Hpy8I	GTNNAC	1 cut(s)	964
HpyAV	CCTTC	4 cut(s)	189, 857, 904, 1159
HpyCH4III	ACNGT	4 cut(s)	29, 316, 378, 961
HpyF10VI	GCNNNNNNNGC	7 cut(s)	128, 149, 537, 728, 1033, 1081, 1340
HpyF3I	CTNAG	5 cut(s)	144, 169, 223, 1097, 1199
Hsp92II	CATG	8 cut(s)	201, 236, 358, 863, 1040, 1124, 1150, 1364
KpnI	GGTACC	1 cut(s)	179
Kzo9I	GATC	3 cut(s)	47, 1168, 1270
LmnI	GCTCC	1 cut(s)	1033
Lsp1109I	GCAGC	2 cut(s)	619, 1007
LweI	GCATC	7 cut(s)	469, 620, 735, 827, 1084, 1093, 1373
MaeI	CTAG	4 cut(s)	62, 636, 791, 1212
MaeIII	GTNAC	2 cut(s)	316, 724
MalI	GATC	3 cut(s)	49, 1170, 1272
MboI	GATC	3 cut(s)	47, 1168, 1270
MboII	GAAGA	3 cut(s)	419, 815, 1166
MhlI	GDGCHC	1 cut(s)	80
MlsI	TGGCCA	1 cut(s)	1334
MluI	ACGCGT	1 cut(s)	17
MluNI	TGGCCA	1 cut(s)	1334
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	9 cut(s)	79, 89, 212, 849, 879, 1119, 1206, 1284, 1287
Mox20I	TGGCCA	1 cut(s)	1334
Mph1103I	ATGCAT	1 cut(s)	1366
MscI	TGGCCA	1 cut(s)	1334
MseI	TTAA	4 cut(s)	35, 564, 668, 848
MslI	CAYNNNNRTG	2 cut(s)	978, 1232
Msp20I	TGGCCA	1 cut(s)	1334
MspA1I	CMGCKG	1 cut(s)	524
MspCI	CTTAAG	1 cut(s)	667
MspI	CCGG	2 cut(s)	1394, 1411
MspR9I	CCNGG	6 cut(s)	557, 701, 708, 1069, 1412, 1422
MvaI	CCWGG	5 cut(s)	557, 701, 708, 1069, 1422
MvnI	CGCG	1 cut(s)	19
MwoI	GCNNNNNNNGC	7 cut(s)	128, 149, 537, 728, 1033, 1081, 1340
NciI	CCSGG	1 cut(s)	1412
NdeII	GATC	3 cut(s)	47, 1168, 1270
NheI	GCTAGC	1 cut(s)	635
NlaIII	CATG	8 cut(s)	201, 236, 358, 863, 1040, 1124, 1150, 1364
NlaIV	GGNNCC	2 cut(s)	177, 705
NsiI	ATGCAT	1 cut(s)	1366
NspI	RCATGY	2 cut(s)	201, 1364
OliI	CACNNNNGTG	1 cut(s)	978
PaeI	GCATGC	1 cut(s)	201
PagI	TCATGA	1 cut(s)	859
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PinAI	ACCGGT	1 cut(s)	1393
PkrI	GCNGC	3 cut(s)	110, 634, 997
PpuMI	RGGWCCY	1 cut(s)	866
Psp5II	RGGWCCY	1 cut(s)	866
Psp6I	CCWGG	5 cut(s)	555, 699, 706, 1067, 1420
PspGI	CCWGG	5 cut(s)	555, 699, 706, 1067, 1420
PspN4I	GGNNCC	2 cut(s)	177, 705
PspPI	GGNCC	1 cut(s)	866
PspPPI	RGGWCCY	1 cut(s)	866
PsrI	GAACNNNNNNTAC	2 cut(s)	301, 333
PstI	CTGCAG	1 cut(s)	1049
PstNI	CAGNNNCTG	2 cut(s)	471, 728
PvuII	CAGCTG	1 cut(s)	524
RsaI	GTAC	6 cut(s)	177, 372, 469, 965, 1145, 1359
RsaNI	GTAC	6 cut(s)	176, 371, 468, 964, 1144, 1358
RseI	CAYNNNNRTG	2 cut(s)	978, 1232
SaqAI	TTAA	4 cut(s)	35, 564, 668, 848
SatI	GCNGC	3 cut(s)	109, 633, 996
Sau3AI	GATC	3 cut(s)	47, 1168, 1270
Sau96I	GGNCC	1 cut(s)	866
ScrFI	CCNGG	6 cut(s)	557, 701, 708, 1069, 1412, 1422
SduI	GDGCHC	1 cut(s)	80
SfaNI	GCATC	7 cut(s)	469, 620, 735, 827, 1084, 1093, 1373
SfcI	CTRYAG	1 cut(s)	1045
SinI	GGWCC	1 cut(s)	866
SmiMI	CAYNNNNRTG	2 cut(s)	978, 1232
SmlI	CTYRAG	1 cut(s)	667
SmoI	CTYRAG	1 cut(s)	667
SphI	GCATGC	1 cut(s)	201
SsiI	CCGC	2 cut(s)	109, 1006
SspMI	CTAG	4 cut(s)	62, 636, 791, 1212
StyD4I	CCNGG	6 cut(s)	555, 699, 706, 1067, 1410, 1420
StyI	CCWWGG	1 cut(s)	1335
TaaI	ACNGT	4 cut(s)	29, 316, 378, 961
TaqI	TCGA	3 cut(s)	80, 204, 307
TatI	WGTACW	3 cut(s)	963, 1143, 1357
TauI	GCSGC	1 cut(s)	111
Tru1I	TTAA	4 cut(s)	35, 564, 668, 848
Tru9I	TTAA	4 cut(s)	35, 564, 668, 848
TscAI	CASTG	3 cut(s)	49, 381, 1005
TseI	GCWGC	2 cut(s)	632, 995
TspDTI	ATGAA	8 cut(s)	115, 199, 419, 848, 876, 1025, 1166, 1335
TspRI	CASTG	3 cut(s)	49, 381, 1005
Vha464I	CTTAAG	1 cut(s)	667
VpaK11BI	GGWCC	1 cut(s)	866
XapI	RAATTY	7 cut(s)	37, 184, 237, 341, 854, 887, 1324
XceI	RCATGY	2 cut(s)	201, 1364
XspI	CTAG	4 cut(s)	62, 636, 791, 1212
Zsp2I	ATGCAT	1 cut(s)	1366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.