Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003002

Physical Location & Seq

Genomic Coordinates Forward (+)

7627919 .. 7633240

Gene Structure 5322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG071400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGTGTTTTACAGACTGGGATTTCTTCTGGGTTTTCTTGCTTTTATTGGAGTGCAGCTAATCCCTCTAACAATGGCTGACTGTCCATTAAATTTAAGTGGATCAAATGCTACTCTAGTAGCCTCTTTGTGCTCGAATAGAGATGACAGAGGGAAATGTTGCCGCTACATAAATGCTTTCGTGGCAGTATCTATTGCTCAGTATGCAAATGCAACAAGCAACTTAGGGGTACCTTCAAATTTATCCAACGCATGCCTCGATTTCATATCACAAACCTTAGAATTGCATGGAATTCCCCAAAATGCAACAGCTTTCTGTGGTTTGGGGACAAAAATCCCAGTAAATTATGAGTGTAAGGGTCGAACAACTGTTACACAGATGGTGCAGTCTCCGAAATTCCCTGATGTCGTGGAAAATTGCAAAGTACCACTGTCAGGGGAAAGTAATTGCAAGAAGTGTATAAATGCTGGCATTGTATATCTTCATAACCTATTAGGAACTGAAAATAACATTACATTCAGTACCTGCCGTGATGCAACTTTTGCTGCAGTAGCAAGCCAAGTTGATAATGCTTCAGCTGTTGGCATTGCAAGCTGTTTCTTTCAAGTCCAGGGGCTTAACATCCTACCAGTTGCAGAGCCATCACCATCATCCACCCCAAAGGCATCTCCAAGTCCATTGGTGGCTGCTAGCCCAAATCAACACTTGTCAGGTGTAGATTTAAGTGAAACACATCATCCCTACCATCTGACCCTGGTTCCAGGTATCGGCATTGCAGTAACTGCTGTTGCTGTAATGATGCTTTTAGTCCTGATAGTTCTTATTCGTAAGAAAAGCAGAGAGCTAGTGGATTTTGAAGATATAGATAAGACATCAAAATCATTTCCCCCACCTCGTCCTTTAAGGAAATTTCATGAAGGTCCTCCATCTATGTTTCAAAAATTCAGCTACAAGGAGATAAAGAAGGCGACAGACAATTTCAATACTACCATTGGACAAGGGGGATTTGGAACTGTGTACAAAGCTCACTTTAGTGATGGTTTAGTAGCAGCAGTGAAGCGGATGAACAAAGTTTCCGAGCAGGGGGAGCATGAGTTCTGCAGAGAGATAGTGCTTCTTGCCAGGTTGCATCATCGGCATCTTGTTTCTCTTAGGGGCTTCTGCATTGAGAAACATGAGAGGTTTCTGATGTATGAGTACATGGCAAATGGTAGCCTGAAGGATCATCTTCATTCTCCCAATAGAACTCCTCTAAGTTGGCAGACTAGAGTTCAAATTGCCATTGATGTGGCTAATGCTCTGGAGTATCTCCATTTCTATTGTGATCCTCCTCTTTGCCATAGAGATATCAAGTCCAGCAATATCTTACTGGATGAAAATTTTGTGGCCAAGGTAAATAGTGGCTGTATGCACAATTACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

474

Amino Acids

52.12

Weight (kDa)

8.37

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	25 - 170	1.1e-24	SPARK
PK_Tyr_Ser-Thr	PF07714	327 - 466	5.3e-28	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	328 - 464	3.8e-27	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49730 AT1G49730 AT1G49730 AT1G49730 AT1G49730 AT3G19300
fragaria_vesca	FvH4_2g05840 FvH4_2g05840 FvH4_2g05840 FvH4_2g05840 FvH4_2g05840
malus_domestica	MD05G1082700.v1.1
prunus_persica	Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1
pyrus_communis	pycom05g07770
rosa_chinensis	RchiOBHm_Chr4g0408511 RchiOBHm_Chr6g0257781
rosa_laevigata	RLG00000014723 RLG00000014972
rosa_multiflora	Rmu_co8277925.1_g000001 Rmu_co8468953.1_g000001 Rmu_sc0003520.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352930 Rroxscaffold_7G00208940
rosa_rugosa	Rorug05G0568100 Rorug05G0568200 Rorug05G0568300 Rorug05G0568400
rosa_samantha	Rh2AG563700 Rh6AG085100 Rh6AG085200 Rh6BG079500 Rh6CG074500 Rh6DG071400
rosa_wichuraiana	Rw6G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	533
Acc65I	GGTACC	1 cut(s)	229
AccB1I	GGYRCC	1 cut(s)	229
AciI	CCGC	2 cut(s)	163, 1060
AclWI	GGATC	3 cut(s)	109, 1230, 1319
AcoI	YGGCCR	1 cut(s)	1386
AcsI	RAATTY	7 cut(s)	91, 238, 291, 395, 908, 941, 1378
AcuI	CTGAAG	2 cut(s)	558, 1238
AfaI	GTAC	5 cut(s)	231, 426, 523, 1019, 1199
AfiI	CCNNNNNNNGG	3 cut(s)	434, 767, 1083
AgsI	TTSAA	6 cut(s)	237, 605, 857, 938, 982, 1274
AjnI	CCWGG	4 cut(s)	609, 753, 760, 1121
AleI	CACNNNNGTG	1 cut(s)	1032
AloI	GAACNNNNNNTCC	4 cut(s)	1058, 1079, 1090, 1111
AluBI	AGCT	7 cut(s)	58, 311, 578, 594, 844, 948, 1025
AluI	AGCT	7 cut(s)	58, 311, 578, 594, 844, 948, 1025
Alw21I	GWGCWC	1 cut(s)	134
Alw26I	GTCTC	1 cut(s)	393
AlwI	GGATC	3 cut(s)	109, 1230, 1319
AlwNI	CAGNNNCTG	2 cut(s)	525, 782
AoxI	GGCC	1 cut(s)	1386
ApeKI	GCWGC	4 cut(s)	55, 545, 686, 1049
ApoI	RAATTY	7 cut(s)	91, 238, 291, 395, 908, 941, 1378
Asp718I	GGTACC	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	920
AsuHPI	GGTGA	1 cut(s)	636
AsuNHI	GCTAGC	1 cut(s)	689
AvaII	GGWCC	1 cut(s)	920
BalI	TGGCCA	1 cut(s)	1388
BanI	GGYRCC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	4 cut(s)	67, 532, 673, 1061
BccI	CCATC	6 cut(s)	373, 649, 655, 753, 934, 1031
BceAI	ACGGC	1 cut(s)	513
BciT130I	CCWGG	4 cut(s)	611, 755, 762, 1123
BcoDI	GTCTC	1 cut(s)	393
BfaI	CTAG	4 cut(s)	116, 690, 845, 1266
BfmI	CTRYAG	2 cut(s)	546, 1099
BfuAI	ACCTGC	1 cut(s)	533
BisI	GCNGC	5 cut(s)	56, 163, 546, 687, 1050
BlsI	GCNGC	5 cut(s)	57, 164, 547, 688, 1051
Bme1390I	CCNGG	4 cut(s)	611, 755, 762, 1123
Bme18I	GGWCC	1 cut(s)	920
BmgT120I	GGNCC	1 cut(s)	920
BmiI	GGNNCC	2 cut(s)	231, 759
BmrFI	CCNGG	4 cut(s)	611, 755, 762, 1123
BmrI	ACTGGG	2 cut(s)	26, 332
BmsI	GCATC	5 cut(s)	523, 674, 789, 1138, 1147
BmtI	GCTAGC	1 cut(s)	693
BmuI	ACTGGG	2 cut(s)	26, 332
BpmI	CTGGAG	1 cut(s)	1322
BsaJI	CCNNGG	3 cut(s)	610, 753, 1389
BsaXI	ACNNNNNCTCC	2 cut(s)	1079, 1109
Bsc4I	CCNNNNNNNGG	3 cut(s)	434, 767, 1083
Bse1I	ACTGG	4 cut(s)	21, 338, 629, 1374
Bse3DI	GCAATG	2 cut(s)	585, 771
BseBI	CCWGG	4 cut(s)	611, 755, 762, 1123
BseDI	CCNNGG	3 cut(s)	610, 753, 1389
BseGI	GGATG	5 cut(s)	621, 650, 736, 1068, 1378
BseLI	CCNNNNNNNGG	3 cut(s)	434, 767, 1083
BseMI	GCAATG	2 cut(s)	585, 771
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	4 cut(s)	21, 338, 629, 1374
BseRI	GAGGAG	2 cut(s)	1239, 1320
BseXI	GCAGC	4 cut(s)	67, 532, 673, 1061
BsgI	GTGCAG	2 cut(s)	74, 404
BshFI	GGCC	1 cut(s)	1388
BshNI	GGYRCC	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	3 cut(s)	434, 767, 1083
BsmAI	GTCTC	1 cut(s)	393
BsmFI	GGGAC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	1388
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp1407I	TGTACA	1 cut(s)	1017
Bsp143I	GATC	3 cut(s)	101, 1222, 1324
BspACI	CCGC	2 cut(s)	163, 1060
BspANI	GGCC	1 cut(s)	1388
BspCNI	CTCAG	1 cut(s)	211
BspHI	TCATGA	1 cut(s)	913
BspLI	GGNNCC	2 cut(s)	231, 759
BspMAI	CTGCAG	2 cut(s)	550, 1103
BspMI	ACCTGC	1 cut(s)	533
BspOI	GCTAGC	1 cut(s)	693
BspPI	GGATC	3 cut(s)	109, 1230, 1319
BspT107I	GGYRCC	1 cut(s)	229
BsrDI	GCAATG	2 cut(s)	585, 771
BsrGI	TGTACA	1 cut(s)	1017
BsrI	ACTGG	4 cut(s)	21, 338, 629, 1374
BssECI	CCNNGG	3 cut(s)	610, 753, 1389
BssMI	GATC	3 cut(s)	101, 1222, 1324
BssT1I	CCWWGG	1 cut(s)	1389
Bst2UI	CCWGG	4 cut(s)	611, 755, 762, 1123
Bst4CI	ACNGT	4 cut(s)	83, 370, 432, 1015
BstAPI	GCANNNNNTGC	2 cut(s)	542, 782
BstAUI	TGTACA	1 cut(s)	1017
BstC8I	GCNNGC	5 cut(s)	253, 469, 556, 592, 691
BstDEI	CTNAG	5 cut(s)	198, 223, 277, 1151, 1253
BstF5I	GGATG	5 cut(s)	621, 650, 736, 1068, 1378
BstKTI	GATC	3 cut(s)	104, 1225, 1327
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	3 cut(s)	101, 1222, 1324
BstMWI	GCNNNNNNNGC	8 cut(s)	182, 203, 542, 551, 591, 782, 1087, 1135
BstNI	CCWGG	4 cut(s)	611, 755, 762, 1123
BstNSI	RCATGY	1 cut(s)	255
BstSCI	CCNGG	4 cut(s)	609, 753, 760, 1121
BstSFI	CTRYAG	2 cut(s)	546, 1099
BstV1I	GCAGC	4 cut(s)	67, 532, 673, 1061
BstXI	CCANNNNNNTGG	1 cut(s)	1288
BsuRI	GGCC	1 cut(s)	1388
BtsCI	GGATG	5 cut(s)	621, 650, 736, 1068, 1378
BtsI	GCAGTG	1 cut(s)	1059
BtsIMutI	CAGTG	2 cut(s)	428, 1059
BveI	ACCTGC	1 cut(s)	533
Cac8I	GCNNGC	5 cut(s)	253, 469, 556, 592, 691
CaiI	CAGNNNCTG	2 cut(s)	525, 782
CciI	TCATGA	1 cut(s)	913
Cfr13I	GGNCC	1 cut(s)	920
Csp6I	GTAC	5 cut(s)	230, 425, 522, 1018, 1198
CviAII	CATG	6 cut(s)	252, 287, 914, 1091, 1175, 1201
CviQI	GTAC	5 cut(s)	230, 425, 522, 1018, 1198
DdeI	CTNAG	5 cut(s)	198, 223, 277, 1151, 1253
DpnI	GATC	3 cut(s)	103, 1224, 1326
DpnII	GATC	3 cut(s)	101, 1222, 1324
EaeI	YGGCCR	1 cut(s)	1386
Eco130I	CCWWGG	1 cut(s)	1389
Eco32I	GATATC	1 cut(s)	1348
Eco47I	GGWCC	1 cut(s)	920
Eco57I	CTGAAG	2 cut(s)	558, 1238
EcoO109I	RGGNCCY	1 cut(s)	920
EcoRI	GAATTC	1 cut(s)	291
EcoRII	CCWGG	4 cut(s)	609, 753, 760, 1121
EcoRV	GATATC	1 cut(s)	1348
EcoT14I	CCWWGG	1 cut(s)	1389
ErhI	CCWWGG	1 cut(s)	1389
FaeI	CATG	6 cut(s)	255, 290, 917, 1094, 1178, 1204
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	6 cut(s)	251, 286, 913, 1090, 1174, 1200
Fnu4HI	GCNGC	5 cut(s)	56, 163, 546, 687, 1050
FokI	GGATG	5 cut(s)	608, 637, 723, 1075, 1385
Fsp4HI	GCNGC	5 cut(s)	56, 163, 546, 687, 1050
FspBI	CTAG	4 cut(s)	116, 690, 845, 1266
GluI	GCNGC	5 cut(s)	56, 163, 546, 687, 1050
GsuI	CTGGAG	1 cut(s)	1322
HaeIII	GGCC	1 cut(s)	1388
Hin1II	CATG	6 cut(s)	255, 290, 917, 1094, 1178, 1204
HphI	GGTGA	1 cut(s)	636
Hpy166II	GTNNAC	1 cut(s)	1018
Hpy188I	TCNGA	4 cut(s)	393, 750, 1078, 1188
Hpy188III	TCNNGA	3 cut(s)	811, 914, 1301
Hpy8I	GTNNAC	1 cut(s)	1018
HpyAV	CCTTC	4 cut(s)	243, 911, 958, 1213
HpyCH4III	ACNGT	4 cut(s)	83, 370, 432, 1015
HpyF10VI	GCNNNNNNNGC	8 cut(s)	182, 203, 542, 551, 591, 782, 1087, 1135
HpyF3I	CTNAG	5 cut(s)	198, 223, 277, 1151, 1253
Hsp92II	CATG	6 cut(s)	255, 290, 917, 1094, 1178, 1204
KpnI	GGTACC	1 cut(s)	233
Kzo9I	GATC	3 cut(s)	101, 1222, 1324
LmnI	GCTCC	1 cut(s)	1087
Lsp1109I	GCAGC	4 cut(s)	67, 532, 673, 1061
LweI	GCATC	5 cut(s)	523, 674, 789, 1138, 1147
MaeI	CTAG	4 cut(s)	116, 690, 845, 1266
MaeIII	GTNAC	2 cut(s)	370, 778
MalI	GATC	3 cut(s)	103, 1224, 1326
MboI	GATC	3 cut(s)	101, 1222, 1324
MboII	GAAGA	4 cut(s)	17, 473, 869, 1220
MhlI	GDGCHC	1 cut(s)	134
MlsI	TGGCCA	1 cut(s)	1388
MluNI	TGGCCA	1 cut(s)	1388
MmeI	TCCRAC	1 cut(s)	270
Mox20I	TGGCCA	1 cut(s)	1388
MscI	TGGCCA	1 cut(s)	1388
MseI	TTAA	6 cut(s)	89, 95, 618, 722, 902, 1423
MslI	CAYNNNNRTG	2 cut(s)	1032, 1286
Msp20I	TGGCCA	1 cut(s)	1388
MspA1I	CMGCKG	1 cut(s)	578
MspR9I	CCNGG	4 cut(s)	611, 755, 762, 1123
MvaI	CCWGG	4 cut(s)	611, 755, 762, 1123
MwoI	GCNNNNNNNGC	8 cut(s)	182, 203, 542, 551, 591, 782, 1087, 1135
NdeII	GATC	3 cut(s)	101, 1222, 1324
NheI	GCTAGC	1 cut(s)	689
NlaIII	CATG	6 cut(s)	255, 290, 917, 1094, 1178, 1204
NlaIV	GGNNCC	2 cut(s)	231, 759
NspI	RCATGY	1 cut(s)	255
OliI	CACNNNNGTG	1 cut(s)	1032
PaeI	GCATGC	1 cut(s)	255
PagI	TCATGA	1 cut(s)	913
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PkrI	GCNGC	5 cut(s)	57, 164, 547, 688, 1051
PpuMI	RGGWCCY	1 cut(s)	920
Psp5II	RGGWCCY	1 cut(s)	920
Psp6I	CCWGG	4 cut(s)	609, 753, 760, 1121
PspGI	CCWGG	4 cut(s)	609, 753, 760, 1121
PspN4I	GGNNCC	2 cut(s)	231, 759
PspPI	GGNCC	1 cut(s)	920
PspPPI	RGGWCCY	1 cut(s)	920
PsrI	GAACNNNNNNTAC	2 cut(s)	355, 387
PstI	CTGCAG	2 cut(s)	550, 1103
PstNI	CAGNNNCTG	2 cut(s)	525, 782
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	5 cut(s)	231, 426, 523, 1019, 1199
RsaNI	GTAC	5 cut(s)	230, 425, 522, 1018, 1198
RseI	CAYNNNNRTG	2 cut(s)	1032, 1286
SaqAI	TTAA	6 cut(s)	89, 95, 618, 722, 902, 1423
SatI	GCNGC	5 cut(s)	56, 163, 546, 687, 1050
Sau3AI	GATC	3 cut(s)	101, 1222, 1324
Sau96I	GGNCC	1 cut(s)	920
ScrFI	CCNGG	4 cut(s)	611, 755, 762, 1123
SduI	GDGCHC	1 cut(s)	134
SfaNI	GCATC	5 cut(s)	523, 674, 789, 1138, 1147
SfcI	CTRYAG	2 cut(s)	546, 1099
SinI	GGWCC	1 cut(s)	920
SmiMI	CAYNNNNRTG	2 cut(s)	1032, 1286
SphI	GCATGC	1 cut(s)	255
SsiI	CCGC	2 cut(s)	163, 1060
SspMI	CTAG	4 cut(s)	116, 690, 845, 1266
StyD4I	CCNGG	4 cut(s)	609, 753, 760, 1121
StyI	CCWWGG	1 cut(s)	1389
TaaI	ACNGT	4 cut(s)	83, 370, 432, 1015
TaqI	TCGA	3 cut(s)	134, 258, 361
TatI	WGTACW	2 cut(s)	1017, 1197
TauI	GCSGC	1 cut(s)	165
Tru1I	TTAA	6 cut(s)	89, 95, 618, 722, 902, 1423
Tru9I	TTAA	6 cut(s)	89, 95, 618, 722, 902, 1423
TscAI	CASTG	2 cut(s)	435, 1059
TseI	GCWGC	4 cut(s)	55, 545, 686, 1049
TspDTI	ATGAA	7 cut(s)	253, 473, 902, 930, 1079, 1220, 1389
TspRI	CASTG	2 cut(s)	435, 1059
VpaK11BI	GGWCC	1 cut(s)	920
XapI	RAATTY	7 cut(s)	91, 238, 291, 395, 908, 941, 1378
XceI	RCATGY	1 cut(s)	255
XspI	CTAG	4 cut(s)	116, 690, 845, 1266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.