Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003002

Physical Location & Seq

Genomic Coordinates Forward (+)

12800644 .. 12801183

Gene Structure 540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG085200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGATCCCGAGTATGTCGTTACTCAGGAGTTAACAGAGAAAAGTGATGTATACAGCTATGGTGTCCTATTGTTGGAGATAGTGACTGGGAGACGAGCGATACAAGACAACAGGAATTTGGTTGAATGGTCACAACAATACATGGAATCGGAATCAAGGGTACCTGATTTAGTCGATCCCAGTATAAGGGACTCATTTAACTTGGATCAGCTTCAAACACTCATTTCTGTTGTCAGCTGGTGCACCCAGAGAGAAGGCCAGGACAGGCCTTCTATTAAACAGGTGCTTAGGCTTTTGTATGAGAGTTCGGACCCGATGCATAGTGGATTTATAGCATCTGTAGACGACGAAGAGTACGGAGAGACAGAAGGAAGAGGAAGGAACAGTAAAGGCAAGATGCATAGGAATGACATGATCTGTCACAGTGGGGATGGGAGATATCTGGCTTCTTCTTCAAGTACATCCAGGTCATATTGTAGCAGAAGCTTCTTGCTTGAAACTGGGTCTCCACAATCCCCTCCGAATATTTTTTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

179

Amino Acids

20.3

Weight (kDa)

4.81

Isoelectric Point (pI)

66.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 98	6.7e-09	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	1 - 97	8.8e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49730 AT1G49730 AT1G49730 AT1G49730 AT1G49730 AT3G19300
fragaria_vesca	FvH4_2g05840 FvH4_2g05840 FvH4_2g05840 FvH4_2g05840 FvH4_2g05840
malus_domestica	MD05G1082700.v1.1
prunus_persica	Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1 Prupe.8G127400_v2.0.a1
pyrus_communis	pycom05g07770
rosa_chinensis	RchiOBHm_Chr4g0408511 RchiOBHm_Chr6g0257781
rosa_laevigata	RLG00000014723 RLG00000014972
rosa_multiflora	Rmu_co8277925.1_g000001 Rmu_co8468953.1_g000001 Rmu_sc0003520.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352930 Rroxscaffold_7G00208940
rosa_rugosa	Rorug05G0568100 Rorug05G0568200 Rorug05G0568300 Rorug05G0568400
rosa_samantha	Rh2AG563700 Rh6AG085100 Rh6AG085200 Rh6BG079500 Rh6CG074500 Rh6DG071400
rosa_wichuraiana	Rw6G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	160
AccB1I	GGYRCC	1 cut(s)	160
AccI	GTMKAC	2 cut(s)	51, 342
AclWI	GGATC	3 cut(s)	12, 170, 213
AcsI	RAATTY	1 cut(s)	115
AfaI	GTAC	3 cut(s)	162, 356, 460
AfiI	CCNNNNNNNGG	2 cut(s)	73, 186
AgsI	TTSAA	4 cut(s)	125, 215, 456, 497
AjnI	CCWGG	2 cut(s)	258, 464
AluBI	AGCT	4 cut(s)	57, 211, 237, 486
AluI	AGCT	4 cut(s)	57, 211, 237, 486
Alw21I	GWGCWC	1 cut(s)	245
Alw26I	GTCTC	3 cut(s)	85, 356, 510
Alw44I	GTGCAC	1 cut(s)	241
AlwI	GGATC	3 cut(s)	12, 170, 213
Ama87I	CYCGRG	1 cut(s)	8
AoxI	GGCC	2 cut(s)	256, 266
ApaLI	GTGCAC	1 cut(s)	241
ApoI	RAATTY	1 cut(s)	115
Asp718I	GGTACC	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	310
AvaI	CYCGRG	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	310
BaeGI	GKGCMC	1 cut(s)	245
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	245
BccI	CCATC	1 cut(s)	425
BciT130I	CCWGG	2 cut(s)	260, 466
BcoDI	GTCTC	3 cut(s)	85, 356, 510
BfmI	CTRYAG	1 cut(s)	339
Bme1390I	CCNGG	2 cut(s)	260, 466
Bme18I	GGWCC	1 cut(s)	310
BmeT110I	CYCGRG	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	3 cut(s)	6, 162, 312
BmrFI	CCNGG	2 cut(s)	260, 466
BmrI	ACTGGG	3 cut(s)	96, 174, 510
BmsI	GCATC	3 cut(s)	306, 344, 387
BmuI	ACTGGG	3 cut(s)	96, 174, 510
Bpu10I	CCTNAGC	1 cut(s)	287
BsaI	GGTCTC	1 cut(s)	510
BsaXI	ACNNNNNCTCC	2 cut(s)	490, 520
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 186
Bse1I	ACTGG	3 cut(s)	91, 180, 505
BseBI	CCWGG	2 cut(s)	260, 466
BseGI	GGATG	2 cut(s)	436, 461
BseLI	CCNNNNNNNGG	2 cut(s)	73, 186
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	3 cut(s)	91, 180, 505
BseSI	GKGCMC	1 cut(s)	245
BshFI	GGCC	2 cut(s)	258, 268
BshNI	GGYRCC	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	245
BsiHKCI	CYCGRG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	73, 186
BsmAI	GTCTC	3 cut(s)	85, 356, 510
BsmBI	CGTCTC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	2 cut(s)	258, 268
Bso31I	GGTCTC	1 cut(s)	510
BsoBI	CYCGRG	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	4 cut(s)	4, 175, 205, 414
BspANI	GGCC	2 cut(s)	258, 268
BspCNI	CTCAG	1 cut(s)	37
BspLI	GGNNCC	3 cut(s)	6, 162, 312
BspPI	GGATC	3 cut(s)	12, 170, 213
BspT107I	GGYRCC	1 cut(s)	160
BspTNI	GGTCTC	1 cut(s)	510
BsrI	ACTGG	3 cut(s)	91, 180, 505
BssMI	GATC	4 cut(s)	4, 175, 205, 414
BssNAI	GTATAC	1 cut(s)	52
Bst1107I	GTATAC	1 cut(s)	52
Bst2UI	CCWGG	2 cut(s)	260, 466
Bst4CI	ACNGT	2 cut(s)	386, 425
Bst6I	CTCTTC	2 cut(s)	345, 367
BstDEI	CTNAG	2 cut(s)	24, 287
BstF5I	GGATG	2 cut(s)	436, 461
BstKTI	GATC	4 cut(s)	7, 178, 208, 417
BstMAI	GTCTC	3 cut(s)	85, 356, 510
BstMBI	GATC	4 cut(s)	4, 175, 205, 414
BstNI	CCWGG	2 cut(s)	260, 466
BstSCI	CCNGG	2 cut(s)	258, 464
BstSFI	CTRYAG	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZ17I	GTATAC	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	258, 268
BtsCI	GGATG	2 cut(s)	436, 461
BtsIMutI	CAGTG	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	310
Csp6I	GTAC	3 cut(s)	161, 355, 459
CviAII	CATG	2 cut(s)	142, 412
CviJI	RGCY	8 cut(s)	57, 211, 237, 258, 268, 292, 446, 486
CviKI_1	RGCY	8 cut(s)	57, 211, 237, 258, 268, 292, 446, 486
CviQI	GTAC	3 cut(s)	161, 355, 459
DdeI	CTNAG	2 cut(s)	24, 287
DpnI	GATC	4 cut(s)	6, 177, 207, 416
DpnII	GATC	4 cut(s)	4, 175, 205, 414
Eam1104I	CTCTTC	2 cut(s)	345, 367
EarI	CTCTTC	2 cut(s)	345, 367
Eco147I	AGGCCT	1 cut(s)	268
Eco31I	GGTCTC	1 cut(s)	510
Eco32I	GATATC	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	310
Eco88I	CYCGRG	1 cut(s)	8
EcoRII	CCWGG	2 cut(s)	258, 464
EcoRV	GATATC	1 cut(s)	440
EcoT22I	ATGCAT	2 cut(s)	321, 402
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	2 cut(s)	145, 415
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	2 cut(s)	141, 411
FblI	GTMKAC	2 cut(s)	51, 342
FokI	GGATG	2 cut(s)	443, 448
HaeIII	GGCC	2 cut(s)	258, 268
Hin1II	CATG	2 cut(s)	145, 415
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	484
HinfI	GANTC	3 cut(s)	146, 152, 191
HpaI	GTTAAC	1 cut(s)	33
Hpy166II	GTNNAC	4 cut(s)	33, 52, 243, 343
Hpy188I	TCNGA	3 cut(s)	151, 310, 522
Hpy188III	TCNNGA	2 cut(s)	8, 26
Hpy8I	GTNNAC	4 cut(s)	33, 52, 243, 343
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	4 cut(s)	248, 279, 362, 372
HpyCH4III	ACNGT	2 cut(s)	386, 425
HpyCH4V	TGCA	3 cut(s)	243, 319, 400
HpyF3I	CTNAG	2 cut(s)	24, 287
Hsp92II	CATG	2 cut(s)	145, 415
KpnI	GGTACC	1 cut(s)	164
KspAI	GTTAAC	1 cut(s)	33
Kzo9I	GATC	4 cut(s)	4, 175, 205, 414
LweI	GCATC	3 cut(s)	306, 344, 387
MaeIII	GTNAC	4 cut(s)	19, 82, 129, 419
MalI	GATC	4 cut(s)	6, 177, 207, 416
MboI	GATC	4 cut(s)	4, 175, 205, 414
MboII	GAAGA	4 cut(s)	362, 384, 441, 444
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	1 cut(s)	115
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	2 cut(s)	368, 528
Mph1103I	ATGCAT	2 cut(s)	321, 402
MseI	TTAA	3 cut(s)	32, 198, 276
MslI	CAYNNNNRTG	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	237
MspR9I	CCNGG	2 cut(s)	260, 466
MvaI	CCWGG	2 cut(s)	260, 466
NdeII	GATC	4 cut(s)	4, 175, 205, 414
NlaIII	CATG	2 cut(s)	145, 415
NlaIV	GGNNCC	3 cut(s)	6, 162, 312
NmuCI	GTSAC	3 cut(s)	82, 129, 419
NsiI	ATGCAT	2 cut(s)	321, 402
PceI	AGGCCT	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	146, 152
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
Psp6I	CCWGG	2 cut(s)	258, 464
PspGI	CCWGG	2 cut(s)	258, 464
PspN4I	GGNNCC	3 cut(s)	6, 162, 312
PspPI	GGNCC	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	237
RsaI	GTAC	3 cut(s)	162, 356, 460
RsaNI	GTAC	3 cut(s)	161, 355, 459
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	3 cut(s)	32, 198, 276
Sau3AI	GATC	4 cut(s)	4, 175, 205, 414
Sau96I	GGNCC	1 cut(s)	310
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	260, 466
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	7 cut(s)	59, 166, 213, 239, 285, 470, 488
SfaNI	GCATC	3 cut(s)	306, 344, 387
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	405
Sse9I	AATT	1 cut(s)	115
SseBI	AGGCCT	1 cut(s)	268
SspI	AATATT	1 cut(s)	526
StuI	AGGCCT	1 cut(s)	268
StyD4I	CCNGG	2 cut(s)	258, 464
TaaI	ACNGT	2 cut(s)	386, 425
TaqI	TCGA	1 cut(s)	174
TasI	AATT	1 cut(s)	115
TatI	WGTACW	1 cut(s)	458
TfiI	GAWTC	2 cut(s)	146, 152
Tru1I	TTAA	3 cut(s)	32, 198, 276
Tru9I	TTAA	3 cut(s)	32, 198, 276
TscAI	CASTG	1 cut(s)	430
TseFI	GTSAC	3 cut(s)	82, 129, 419
Tsp45I	GTSAC	3 cut(s)	82, 129, 419
TspGWI	ACGGA	1 cut(s)	372
TspRI	CASTG	1 cut(s)	430
VneI	GTGCAC	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	310
XapI	RAATTY	1 cut(s)	115
XmiI	GTMKAC	2 cut(s)	51, 342
Zsp2I	ATGCAT	2 cut(s)	321, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.